augustus (3.5.0+dfsg-5build4)

Details

Core information at a glance

Distribution: ubuntu
Origin: ubuntu-resolute
Repository: https://nl.archive.ubuntu.com/ubuntu
Codename: resolute
Component: universe
Source: augustus
Architecture: amd64v3
Section: universe/science
Priority: optional
Maintainer: Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size: 6.7 MB
Size expected: 1.8 MB
Size actual: 1.8 MB
Size match: match

Dependencies

Required package dependencies

libbamtools2.5.3 (>= 2.5.3+dfsg)
libboost-iostreams1.90.0 (>= 1.90.0)
libc6 (>= 2.38)
libcolamd3 (>= 1:7.0.1)
libgcc-s1 (>= 3.3.1)
libgsl28 (>= 2.8+dfsg)
libhts3t64 (>= 1.17)
libmysql++3t64
libmysqlclient24 (>= 8.4.2)
libsqlite3-0 (>= 3.5.9)
libstdc++6 (>= 14)
augustus-data

Recommends

Recommended package dependencies

samtools

Suggested packages

Recommended additional packages

Provides

Virtual packages provided

None

Description

gene prediction in eukaryotic genomes

Homepage Download .deb

Checksums

Hash values and integrity verification status

Type	Expected	Actual	Match
MD5	Not provided	39de89c0…f8b26bc5	not available
SHA-1	Not provided	f5c5498b…d522bf68	not available
SHA-256	Not provided	d0452514…77f62776	not available
SHA-512	948026c4…85b3cdd4	948026c4…85b3cdd4	match

Files and directories included

.
usr
usr/bin
usr/bin/aln2wig
usr/bin/augustus
usr/bin/bam2hints
usr/bin/bam2wig
usr/bin/compileSpliceCands
usr/bin/etraining
usr/bin/fastBlockSearch
usr/bin/filterBam
usr/bin/getSeq
usr/bin/homGeneMapping
usr/bin/joingenes
usr/bin/load2db
usr/bin/load2sqlitedb
usr/bin/pp_simScore
usr/bin/prepareAlign
usr/share
usr/share/augustus
usr/share/augustus/scripts
usr/share/augustus/scripts/README.autoAug
usr/share/augustus/scripts/SplicedAlignment.pm
usr/share/augustus/scripts/aa2nonred.pl
usr/share/augustus/scripts/add_name_to_gff3.pl
usr/share/augustus/scripts/augustify.py
usr/share/augustus/scripts/augustus2browser.pl
usr/share/augustus/scripts/augustus2gbrowse.pl
usr/share/augustus/scripts/autoAug.pl
usr/share/augustus/scripts/autoAugPred.pl
usr/share/augustus/scripts/autoAugTrain.pl
usr/share/augustus/scripts/bamToWig.py
usr/share/augustus/scripts/bedgraph2wig.pl
usr/share/augustus/scripts/blat2gbrowse.pl
usr/share/augustus/scripts/blat2hints.pl
usr/share/augustus/scripts/block2prfl.pl
usr/share/augustus/scripts/cegma2gff.pl
usr/share/augustus/scripts/checkParamArchive.pl
usr/share/augustus/scripts/checkUTR
usr/share/augustus/scripts/cleanDOSfasta.pl
usr/share/augustus/scripts/clusterAndSplitGenes.pl
usr/share/augustus/scripts/compare_masking.pl
usr/share/augustus/scripts/computeFlankingRegion.pl
usr/share/augustus/scripts/createAugustusJoblist.pl
usr/share/augustus/scripts/del_from_prfl.pl
usr/share/augustus/scripts/evalCGP.pl
usr/share/augustus/scripts/eval_dualdecomp.pl
usr/share/augustus/scripts/eval_multi_gtf.pl
usr/share/augustus/scripts/exonerate2hints.pl
usr/share/augustus/scripts/exoniphyDb2hints.pl
usr/share/augustus/scripts/extractAnno.py
usr/share/augustus/scripts/extractTranscriptEnds.pl
usr/share/augustus/scripts/filter-ppx.pl
usr/share/augustus/scripts/filterGenes.pl
usr/share/augustus/scripts/filterGenesIn.pl
usr/share/augustus/scripts/filterGenesIn_mRNAname.pl
usr/share/augustus/scripts/filterGenesOut_mRNAname.pl
usr/share/augustus/scripts/filterInFrameStopCodons.pl
usr/share/augustus/scripts/filterMaf.pl
usr/share/augustus/scripts/filterPSL.pl
usr/share/augustus/scripts/filterShrimp.pl
usr/share/augustus/scripts/filterSpliceHints.pl
usr/share/augustus/scripts/findGffNamesInFasta.pl
usr/share/augustus/scripts/findRepetitiveProtSeqs.py
usr/share/augustus/scripts/fix_in_frame_stop_codon_genes.py
usr/share/augustus/scripts/fix_joingenes_gtf.pl
usr/share/augustus/scripts/gbSmallDNA2gff.pl
usr/share/augustus/scripts/gbrowse.conf
usr/share/augustus/scripts/gbrowseold2gff3.pl
usr/share/augustus/scripts/getAnnoFasta.pl
usr/share/augustus/scripts/getAnnoFastaFromJoingenes.py
usr/share/augustus/scripts/getLinesMatching.pl
usr/share/augustus/scripts/get_loci_from_gb.pl
usr/share/augustus/scripts/gff2gbSmallDNA.pl
usr/share/augustus/scripts/gff2ps_mycustom
usr/share/augustus/scripts/gffGetmRNA.pl
usr/share/augustus/scripts/gp2othergp.pl
usr/share/augustus/scripts/gtf2aa.pl
usr/share/augustus/scripts/gtf2bed.pl
usr/share/augustus/scripts/gtf2gff.pl
usr/share/augustus/scripts/gth2gtf.pl
usr/share/augustus/scripts/hal2maf_split.pl
usr/share/augustus/scripts/helpMod.pm
usr/share/augustus/scripts/joinPeptides.pl
usr/share/augustus/scripts/join_aug_pred.pl
usr/share/augustus/scripts/join_mult_hints.pl
usr/share/augustus/scripts/maf2conswig.pl
usr/share/augustus/scripts/makeMatchLists.pl
usr/share/augustus/scripts/makeUtrTrainingSet.pl
usr/share/augustus/scripts/maskNregions.pl
usr/share/augustus/scripts/merge_masking.pl
usr/share/augustus/scripts/moveParameters.pl
usr/share/augustus/scripts/msa2prfl.pl
usr/share/augustus/scripts/new_species.pl
usr/share/augustus/scripts/opt_init_and_term_probs.pl
usr/share/augustus/scripts/optimize_augustus.pl
usr/share/augustus/scripts/parseSim4Output.pl
usr/share/augustus/scripts/partition_gtf2gb.pl
usr/share/augustus/scripts/pasapolyA2hints.pl
usr/share/augustus/scripts/peptides2alternatives.pl
usr/share/augustus/scripts/peptides2hints.pl
usr/share/augustus/scripts/phastconsDB2hints.pl
usr/share/augustus/scripts/polyA2hints.pl
usr/share/augustus/scripts/prints2prfl.pl
usr/share/augustus/scripts/pslMap.pl
usr/share/augustus/scripts/randomSplit.pl
usr/share/augustus/scripts/rename_species.pl
usr/share/augustus/scripts/retroDB2hints.pl
usr/share/augustus/scripts/rmRedundantHints.pl
usr/share/augustus/scripts/runAllSim4.pl
usr/share/augustus/scripts/samMap.pl
usr/share/augustus/scripts/scipiogff2gff.pl
usr/share/augustus/scripts/setStopCodonFreqs.pl
usr/share/augustus/scripts/simpleFastaHeaders.pl
usr/share/augustus/scripts/simplifyFastaHeaders.pl
usr/share/augustus/scripts/splitMfasta.pl
usr/share/augustus/scripts/split_wiggle.pl
usr/share/augustus/scripts/stringtie2fa.py
usr/share/augustus/scripts/summarizeACGTcontent.pl
usr/share/augustus/scripts/transMap2hints.pl
usr/share/augustus/scripts/uniquePeptides.pl
usr/share/augustus/scripts/utrgff2gbrowse.pl
usr/share/augustus/scripts/webserver-results.head
usr/share/augustus/scripts/webserver-results.tail
usr/share/augustus/scripts/weedMaf.pl
usr/share/augustus/scripts/wig2hints.pl
usr/share/augustus/scripts/wigchoose.pl
usr/share/augustus/scripts/writeResultsPage.pl
usr/share/augustus/scripts/yaml2gff.1.4.pl
usr/share/doc
usr/share/doc/augustus
usr/share/doc/augustus/changelog.Debian.gz
usr/share/doc/augustus/copyright
usr/share/man
usr/share/man/man1
usr/share/man/man1/aln2wig.1.gz
usr/share/man/man1/augustus.1.gz
usr/share/man/man1/bam2hints.1.gz
usr/share/man/man1/bam2wig.1.gz
usr/share/man/man1/compileSpliceCands.1.gz
usr/share/man/man1/etraining.1.gz
usr/share/man/man1/fastBlockSearch.1.gz
usr/share/man/man1/filterBam.1.gz
usr/share/man/man1/getSeq.1.gz
usr/share/man/man1/homGeneMapping.1.gz
usr/share/man/man1/joingenes.1.gz
usr/share/man/man1/load2db.1.gz
usr/share/man/man1/load2sqlitedb.1.gz
usr/share/man/man1/pp_simScore.1.gz
usr/share/man/man1/prepareAlign.1.gz
usr/share/doc/augustus/HISTORY.TXT.gz