r-cran-seurat (5.4.0-1)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- resolute
- Component
- universe
- Source
- r-cran-seurat
- Architecture
- amd64v3
- Section
- universe/gnu-r
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 4.5 MB
- Size expected
- 3.3 MB
- Size actual
- 3.3 MB
- Size match
- match
Dependencies
Required package dependencies
- r-api-4.0
- r-cran-seuratobject (>= 5.0.2)
- r-cran-cluster
- r-cran-cowplot
- r-cran-fastdummies
- r-cran-fitdistrplus
- r-cran-future
- r-cran-future.apply
- r-cran-generics (>= 0.1.3)
- r-cran-ggplot2 (>= 3.3.0)
- r-cran-ggrepel
- r-cran-ggridges
- r-cran-httr
- r-cran-ica
- r-cran-igraph
- r-cran-irlba
- r-cran-jsonlite
- r-cran-kernsmooth
- r-cran-lifecycle
- r-cran-lmtest
- r-cran-mass
- r-cran-matrix (>= 1.5-0)
- r-cran-matrixstats
- r-cran-miniui
- r-cran-patchwork
- r-cran-pbapply
- r-cran-plotly (>= 4.9.0)
- r-cran-png
- r-cran-progressr
- r-cran-rann
- r-cran-rcolorbrewer
- r-cran-rcpp (>= 1.0.7)
- r-cran-rcppannoy (>= 0.0.18)
- r-cran-rcpphnsw
- r-cran-reticulate
- r-cran-rlang
- r-cran-rocr
- r-cran-rspectra
- r-cran-rtsne
- r-cran-scales
- r-cran-scattermore (>= 1.2)
- r-cran-sctransform (>= 0.4.1)
- r-cran-shiny
- r-cran-spatstat.explore
- r-cran-spatstat.geom
- r-cran-tibble
- r-cran-uwot (>= 0.1.10)
- r-cran-rcppeigen
- r-cran-rcppprogress
- libc6 (>= 2.38)
- libgcc-s1 (>= 3.0)
- libstdc++6 (>= 14)
Recommends
Recommended package dependencies
- r-cran-ape
- r-cran-base64enc
- r-bioc-biobase
- r-bioc-biocgenerics
- r-cran-data.table
- r-bioc-deseq2
- r-bioc-delayedarray
- r-bioc-genomicranges
- r-bioc-genomeinfodb
- r-bioc-glmgampoi
- r-cran-ggrastr
- r-cran-hdf5r
- r-bioc-iranges
- r-cran-leidenbase
- r-bioc-limma
- r-cran-magrittr
- r-cran-metap
- r-cran-mixtools
- r-bioc-monocle
- r-cran-rsvd
- r-cran-r.utils
- r-bioc-rtracklayer
- r-bioc-s4vectors
- r-cran-sf (>= 1.0-0)
- r-cran-sp
- r-bioc-singlecellexperiment
- r-bioc-summarizedexperiment
- r-cran-testthat
- r-cran-vgam
Suggested packages
Recommended additional packages
- None
Provides
Virtual packages provided
- None
Description
Tools for Single Cell Genomics
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 8afbdc19…c8c48cf4 | match |
| SHA-1 | 21cdb54c…e56aad53 | match |
| SHA-256 | 3ef1acc8…826e3cc0 | match |
| SHA-512 | 06b6c44d…42f2c3d8 | match |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/Seurat usr/lib/R/site-library/Seurat/CITATION usr/lib/R/site-library/Seurat/DESCRIPTION usr/lib/R/site-library/Seurat/INDEX usr/lib/R/site-library/Seurat/Meta usr/lib/R/site-library/Seurat/Meta/Rd.rds usr/lib/R/site-library/Seurat/Meta/data.rds usr/lib/R/site-library/Seurat/Meta/features.rds usr/lib/R/site-library/Seurat/Meta/hsearch.rds usr/lib/R/site-library/Seurat/Meta/links.rds usr/lib/R/site-library/Seurat/Meta/nsInfo.rds usr/lib/R/site-library/Seurat/Meta/package.rds usr/lib/R/site-library/Seurat/NAMESPACE usr/lib/R/site-library/Seurat/NEWS.md usr/lib/R/site-library/Seurat/R usr/lib/R/site-library/Seurat/R/Seurat usr/lib/R/site-library/Seurat/R/Seurat.rdb usr/lib/R/site-library/Seurat/R/Seurat.rdx usr/lib/R/site-library/Seurat/data usr/lib/R/site-library/Seurat/data/Rdata.rdb usr/lib/R/site-library/Seurat/data/Rdata.rds usr/lib/R/site-library/Seurat/data/Rdata.rdx usr/lib/R/site-library/Seurat/extdata usr/lib/R/site-library/Seurat/extdata/pbmc_raw.txt usr/lib/R/site-library/Seurat/help usr/lib/R/site-library/Seurat/help/AnIndex usr/lib/R/site-library/Seurat/help/Seurat.rdb usr/lib/R/site-library/Seurat/help/Seurat.rdx usr/lib/R/site-library/Seurat/help/aliases.rds usr/lib/R/site-library/Seurat/help/paths.rds usr/lib/R/site-library/Seurat/html usr/lib/R/site-library/Seurat/html/00Index.html usr/lib/R/site-library/Seurat/html/R.css usr/lib/R/site-library/Seurat/libs usr/lib/R/site-library/Seurat/libs/Seurat.so usr/share usr/share/doc usr/share/doc/r-cran-seurat usr/share/doc/r-cran-seurat/changelog.Debian.gz usr/share/doc/r-cran-seurat/copyright usr/share/doc/r-cran-seurat/run-unit-test usr/share/doc/r-cran-seurat/tests usr/share/doc/r-cran-seurat/tests/testdata usr/share/doc/r-cran-seurat/tests/testdata/barcodes.tsv usr/share/doc/r-cran-seurat/tests/testdata/cr3.0 usr/share/doc/r-cran-seurat/tests/testdata/cr3.0/barcodes.tsv.gz usr/share/doc/r-cran-seurat/tests/testdata/cr3.0/features.tsv.gz usr/share/doc/r-cran-seurat/tests/testdata/cr3.0/matrix.mtx.gz usr/share/doc/r-cran-seurat/tests/testdata/genes.tsv.gz usr/share/doc/r-cran-seurat/tests/testdata/matrix.mtx.gz usr/share/doc/r-cran-seurat/tests/testdata/nbt_small.Rdata.gz usr/share/doc/r-cran-seurat/tests/testdata/visium usr/share/doc/r-cran-seurat/tests/testdata/visium/filtered_feature_bc_matrix.h5.gz usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial/scalefactors_json.json usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial/tissue_hires_image.png usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial/tissue_lowres_image.png usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial/tissue_positions_list.csv.gz usr/share/doc/r-cran-seurat/tests/testdata/visium_hd usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_008um usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_008um/filtered_feature_bc_matrix.h5.gz usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_008um/spatial usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_008um/spatial/scalefactors_json.json usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_008um/spatial/tissue_hires_image.png usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_008um/spatial/tissue_lowres_image.png usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_008um/spatial/tissue_positions.parquet.gz usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_016um usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_016um/filtered_feature_bc_matrix.h5.gz usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_016um/spatial usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_016um/spatial/scalefactors_json.json usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_016um/spatial/tissue_hires_image.png usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_016um/spatial/tissue_lowres_image.png usr/share/doc/r-cran-seurat/tests/testdata/visium_hd/binned_outputs/square_016um/spatial/tissue_positions.parquet.gz usr/share/doc/r-cran-seurat/tests/testthat usr/share/doc/r-cran-seurat/tests/testthat/test_data_manipulation.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_differential_expression.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_dimensional_reduction.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_find_clusters.R usr/share/doc/r-cran-seurat/tests/testthat/test_integratedata.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_integration.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_integration5.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_load_10X.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_modularity_optimizer.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_objects.R usr/share/doc/r-cran-seurat/tests/testthat/test_preprocessing.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_sketching.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_spatial.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_transferdata.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_tree.R usr/share/doc/r-cran-seurat/tests/testthat/test_utilities.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_visualization.R usr/share/doc/r-cran-seurat/tests/testthat.R