sift (4.0.3b-6)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- multiverse
- Source
- none
- Architecture
- amd64
- Section
- multiverse/science
- Priority
- extra
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 1 kB
- Size expected
- 253.3 kB
- Size actual
- 253.3 kB
- Size match
Suggested packages
Recommended additional packages
- None
Description
predicts if a substitution in a protein has a phenotypic effect
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | b0f1d86a…d893b970 | |
| SHA-1 | cb13aa74…70742b9e | |
| SHA-256 | d4cf639c…edf86d0e | |
| SHA-512 | 21190e43…dc3cf45a |
Contents
Files and directories included
. usr usr/bin usr/lib usr/lib/sift usr/lib/sift/bin usr/lib/sift/bin/Classify_SNPs_Indels.pl usr/lib/sift/bin/DNA_PROT_SUBROUTINES.pl usr/lib/sift/bin/IntersectLocations.sh usr/lib/sift/bin/SIFT_exome_indels.pl usr/lib/sift/bin/SIFT_exome_nssnvs.pl usr/lib/sift/bin/SIFT_for_submitting_NCBI_gi_id.csh usr/lib/sift/bin/SIFT_for_submitting_fasta_seq.csh usr/lib/sift/bin/SIFT_intersect_cds.pl usr/lib/sift/bin/SIFT_subroutines.pm usr/lib/sift/bin/SNPClassifier usr/lib/sift/bin/SNPClassifier/Classify_SNPs.pl usr/lib/sift/bin/SNPClassifier/Extract_Coding_Info.pl usr/lib/sift/bin/choose_seqs_via_psiblastseedmedian usr/lib/sift/bin/clump_output_alignedseq usr/lib/sift/bin/consensus_to_seq usr/lib/sift/bin/detect_indel.pl usr/lib/sift/bin/detect_repeat.pl usr/lib/sift/bin/get_sequences.pl usr/lib/sift/bin/indelfile_to_gff.pl usr/lib/sift/bin/info_on_seqs usr/lib/sift/bin/map_coords_to_bin.pl usr/lib/sift/bin/map_coords_to_bin_indels.pl usr/lib/sift/bin/model_transcript.pl usr/lib/sift/bin/perlscripts usr/lib/sift/bin/perlscripts/get_BLINK_seq.pl usr/lib/sift/bin/perlscripts/separate_query_from_rest_of_seqs.pl usr/lib/sift/bin/psiblast_res_to_fasta_dbpairwise usr/lib/sift/bin/reformat_chrfile.pl usr/lib/sift/bin/seqs_chosen_via_median_info.csh usr/lib/sift/bin/seqs_from_psiblast_res usr/lib/sift/bin/seqs_to_matrixweb usr/lib/sift/bin/sift_feed_to_chr_coords_batch.pl usr/lib/sift/bin/snv_db_engine.pl usr/share usr/share/doc usr/share/doc/sift usr/share/doc/sift/README.Debian usr/share/doc/sift/README.gz usr/share/doc/sift/README_4.0.3.gz usr/share/doc/sift/VERSION_UPDATE usr/share/doc/sift/changelog.Debian.gz usr/share/doc/sift/copyright usr/share/doc/sift/examples usr/share/doc/sift/examples/lacI.SIFTprediction usr/share/doc/sift/examples/lacI.alignedfasta usr/share/doc/sift/examples/lacI.fasta usr/share/doc/sift/examples/lacI.fasta.query.out.gz usr/share/doc/sift/examples/lacI.subst usr/share/man usr/share/man/man1 usr/share/man/man1/SIFT_for_submitting_fasta_seq.csh.1.gz usr/share/man/man1/info_on_seqs.1.gz usr/share/sift usr/share/sift/IntersectFeatures.jar usr/share/sift/blimps usr/share/sift/blimps/docs usr/share/sift/blimps/docs/blosum62.bla.new usr/share/sift/blimps/docs/coduse.csh usr/share/sift/blimps/docs/config.doc usr/share/sift/blimps/docs/default.amino.frq usr/share/sift/blimps/docs/default.codon.frq usr/share/sift/blimps/docs/default.codon.use usr/share/sift/blimps/docs/default.consensus.iij usr/share/sift/blimps/docs/default.diri usr/share/sift/blimps/docs/default.embed.iij usr/share/sift/blimps/docs/default.embed.mat usr/share/sift/blimps/docs/default.embed.qij usr/share/sift/blimps/docs/default.iij usr/share/sift/blimps/docs/default.mat usr/share/sift/blimps/docs/default.qij usr/share/sift/blimps/docs/default.rank usr/share/sift/blimps/docs/default.sij usr/share/sift/blimps/docs/identity.frq usr/share/sift/blimps/docs/skiplist.doc usr/share/sift/blimps/docs/sl-functions.doc usr/bin/SIFT_exome_nssnvs.pl usr/bin/SIFT_for_submitting_fasta_seq.csh usr/bin/info_on_seqs usr/bin/map_coords_to_bin.pl usr/bin/sift_feed_to_chr_coords_batch.pl usr/bin/sift_for_submitting_fasta_seq.csh usr/bin/snv_db_engine.pl usr/share/man/man1/sift_for_submitting_fasta_seq.csh.1.gz