beast-mcmc-examples (1.10.4+dfsg-8)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- multiverse
- Source
- beast-mcmc
- Architecture
- amd64v3
- Section
- multiverse/doc
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 2.2 kB
- Size expected
- 2 MB
- Size actual
- 2 MB
- Size match
Dependencies
Required package dependencies
- None
Suggested packages
Recommended additional packages
- None
Description
Bayesian MCMC phylogenetic inference - example data
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 0104fb9f…513046ac | |
| SHA-1 | 17a152f2…aba2a5bc | |
| SHA-256 | bce2fab6…b22a4777 | |
| SHA-512 | f57807eb…b541d0e1 |
Contents
Files and directories included
. usr usr/share usr/share/doc usr/share/doc/beast-mcmc usr/share/doc/beast-mcmc/examples usr/share/doc/beast-mcmc/examples/Benchmarks usr/share/doc/beast-mcmc/examples/Benchmarks/benchmark1.xml.gz usr/share/doc/beast-mcmc/examples/Benchmarks/benchmark2.xml.gz usr/share/doc/beast-mcmc/examples/Benchmarks/old_benchmark.xml.gz usr/share/doc/beast-mcmc/examples/Calibrations usr/share/doc/beast-mcmc/examples/Calibrations/constrainedTaxaTest1.xml usr/share/doc/beast-mcmc/examples/Calibrations/constrainedTaxaTest2.xml usr/share/doc/beast-mcmc/examples/Calibrations/constrainedTaxaTest3.xml usr/share/doc/beast-mcmc/examples/Calibrations/constrainedTaxaTest4.xml usr/share/doc/beast-mcmc/examples/Calibrations/constrainedTaxaTest5.xml usr/share/doc/beast-mcmc/examples/Calibrations/constrainedTaxaTest6.xml usr/share/doc/beast-mcmc/examples/Calibrations/constrainedTaxaTest7.xml usr/share/doc/beast-mcmc/examples/Calibrations/constrainedTaxaTest8.xml usr/share/doc/beast-mcmc/examples/Calibrations/constrainedTaxaTest9.xml usr/share/doc/beast-mcmc/examples/Calibrations/testCalibration.xml.gz usr/share/doc/beast-mcmc/examples/Calibrations/test_5t_1c-pointSyntax.xml usr/share/doc/beast-mcmc/examples/Calibrations/test_5t_1c_unif.xml usr/share/doc/beast-mcmc/examples/Calibrations/test_5t_2c_e2.xml usr/share/doc/beast-mcmc/examples/Calibrations/test_5t_2c_fp_unif.xml usr/share/doc/beast-mcmc/examples/Calibrations/test_5t_5c_unif.xml usr/share/doc/beast-mcmc/examples/Calibrations/test_7t_2c_4c_unif.xml usr/share/doc/beast-mcmc/examples/Calibrations/test_7t_2c_7c_unif.xml usr/share/doc/beast-mcmc/examples/ContinuousTraits usr/share/doc/beast-mcmc/examples/ContinuousTraits/DarwinsFinches.nex.gz usr/share/doc/beast-mcmc/examples/ContinuousTraits/DarwinsFinchesTraits.txt usr/share/doc/beast-mcmc/examples/ContinuousTraits/racoon_rabies.xml.gz usr/share/doc/beast-mcmc/examples/ContinuousTraits/racoon_rabies_locations.txt usr/share/doc/beast-mcmc/examples/Data usr/share/doc/beast-mcmc/examples/Data/Darwins-finches.nex.gz usr/share/doc/beast-mcmc/examples/Data/Dengue4.env.nex.gz usr/share/doc/beast-mcmc/examples/Data/H1N1_HA.nex.gz usr/share/doc/beast-mcmc/examples/Data/Primates_starting_tree.nex.gz usr/share/doc/beast-mcmc/examples/Data/Primates_two_partition.nex.gz usr/share/doc/beast-mcmc/examples/Data/Shankarappa.Patient9.nex.gz usr/share/doc/beast-mcmc/examples/Data/YFV.nex.gz usr/share/doc/beast-mcmc/examples/Data/anolis.nex.gz usr/share/doc/beast-mcmc/examples/Data/apes.nex.gz usr/share/doc/beast-mcmc/examples/Data/microsatellite_data.txt usr/share/doc/beast-mcmc/examples/DiscreteTraits usr/share/doc/beast-mcmc/examples/DiscreteTraits/H5N1_HA.nex.gz usr/share/doc/beast-mcmc/examples/DiscreteTraits/phylogeneticGLM usr/share/doc/beast-mcmc/examples/DiscreteTraits/phylogeneticGLM/batRABV.fas.gz usr/share/doc/beast-mcmc/examples/DiscreteTraits/phylogeneticGLM/batRABV_glm.xml.gz usr/share/doc/beast-mcmc/examples/DiscreteTraits/phylogeneticGLM/batRABV_hostLocation.txt.gz usr/share/doc/beast-mcmc/examples/DiscreteTraits/phylogeneticGLM/hostDistances.csv usr/share/doc/beast-mcmc/examples/DiscreteTraits/taxaLocations.txt usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/freqs_k_unrest.csv usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/freqs_zs.csv usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/inirates.csv.gz usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/norates.csv.gz usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/rates_k_unrest.csv.gz usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/rates_zs.csv.gz usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/freqs.csv usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/means.csv.gz usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/pcs.csv.gz usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/scales.csv.gz usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/startfacs.csv.gz usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/testECMcodonModel.xml.gz usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/testPCMcodonModel.xml.gz usr/share/doc/beast-mcmc/examples/MDS usr/share/doc/beast-mcmc/examples/MDS/US_cities.txt usr/share/doc/beast-mcmc/examples/MDS/US_cities.xml.gz usr/share/doc/beast-mcmc/examples/Phylogeography usr/share/doc/beast-mcmc/examples/Phylogeography/H5N1_HA_discrete.xml.gz usr/share/doc/beast-mcmc/examples/Phylogeography/H5N1_HA_discrete_traits.xml.gz usr/share/doc/beast-mcmc/examples/Phylogeography/continuous usr/share/doc/beast-mcmc/examples/Phylogeography/continuous/RacRABV_LogNRRW.xml.gz usr/share/doc/beast-mcmc/examples/Phylogeography/continuous/RacRABV_cauchyRRW.xml.gz usr/share/doc/beast-mcmc/examples/Phylogeography/continuous/RacRABV_gammaRRW.xml.gz usr/share/doc/beast-mcmc/examples/Phylogeography/continuous/RacRABV_homogeneous.xml.gz usr/share/doc/beast-mcmc/examples/Recombination usr/share/doc/beast-mcmc/examples/Recombination/arg-ecoli.xml.gz usr/share/doc/beast-mcmc/examples/Recombination/arg-lepto.xml.gz usr/share/doc/beast-mcmc/examples/Recombination/arg-rokas.xml.gz usr/share/doc/beast-mcmc/examples/TestXML usr/share/doc/beast-mcmc/examples/TestXML/ClockModels usr/share/doc/beast-mcmc/examples/TestXML/ClockModels/testFixedLocalClock.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/ClockModels/testRandomLocalClock.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/ClockModels/testStrictClock.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/ClockModels/testStrictClockNoDate.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/ClockModels/testStrictClockNoDate2.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/ClockModels/testStrictClockTipDatesSampling.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/ClockModels/testStrictClockTipTime.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/ClockModels/testUCRelaxedClockContinuousQuantileLogNormal.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/ClockModels/testUCRelaxedClockGamma.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/ClockModels/testUCRelaxedClockLogNormal.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/SubstModels usr/share/doc/beast-mcmc/examples/TestXML/SubstModels/testSRD06CP12_3.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/SubstModels/testSiteModelAlpha.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testBSP.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testBSP1.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testBSPNoClock.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testBirthDeathAsYule.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testBirthDeathModel_10taxa.xml usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testCataclysmCoalescent.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testCoalescent.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testCoalescentNoClock.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testCoalescentNoClock1.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testEBSP.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testExponentialGrowth.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testGMRFCoalescent.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testLinearBSP.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testPiecewiseExponential.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testYule.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testYuleCase3.xml usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testYuleModel.xml usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testYuleModel_10taxa.xml usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testYuleOneSite.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors/testYulePrior.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors+ClockModels usr/share/doc/beast-mcmc/examples/TestXML/TreePriors+ClockModels/BayesianSkyline+unccorelatedExp.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors+ClockModels/GMRFBayesianSkyride+strict .xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors+ClockModels/Yule+unccorelatedExp.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors+ClockModels/birthDeath+unccorelatedLn.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors+ClockModels/constant+uncorrelatedExp.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors+ClockModels/expansionDoubling+strict.xml.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors+ClockModels/exponentialDoubling+strict.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/TreePriors+ClockModels/extendedBayesianSkyline+uncorrelatedLn.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testAddPatterns.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testAddPatterns2.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testAlignmentStatistics.xml usr/share/doc/beast-mcmc/examples/TestXML/testAncestralReconstruction.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testAscertainment.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testAutocorrelatedRelaxedClock.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testBinaryDollo.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testCodonLikelihood.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testComparativeMethod.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testDriftDiffusion.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testFullConditionals.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testGaussianProcessFromTree.xml usr/share/doc/beast-mcmc/examples/TestXML/testGoudllersSmallprob.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testGradients.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testIntegratedFactorModel.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testJointInternalSample.xml usr/share/doc/beast-mcmc/examples/TestXML/testJointTipAges.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testLatentLiability.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testLewisMk.xml usr/share/doc/beast-mcmc/examples/TestXML/testLikelihood.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testLognormalPrior.xml usr/share/doc/beast-mcmc/examples/TestXML/testMC3.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testMCMC.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testML.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testMSSD.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testMVN.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testMVOU.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testMarkovJumps.xml usr/share/doc/beast-mcmc/examples/TestXML/testMissingIntegratedTraitLikelihood.xml usr/share/doc/beast-mcmc/examples/TestXML/testMissingTraits.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testMixedModel.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testMultiThreading.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testMvnHmc.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testMvnHmcCompare.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testNormalModelEllipticalSliceSampler.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testNormalModelGibbs.xml usr/share/doc/beast-mcmc/examples/TestXML/testPMD.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testPopTreeModel.xml usr/share/doc/beast-mcmc/examples/TestXML/testPosteriorIBD.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testRestrictedAncestralReconstruction.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testRestrictedPartials.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testSequenceSimulator.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testSimplePathSampling.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testStarTreeTest.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testStarTreeTest2.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testTipDatePrecision.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testTransmissionStatistic.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testTransposedMatrixParameter.xml usr/share/doc/beast-mcmc/examples/TestXML/testTreePathSampling.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testTruncatedNormal.xml usr/share/doc/beast-mcmc/examples/TestXML/testTruncatedNormal15dimension.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testUncertainSequences.xml.gz usr/share/doc/beast-mcmc/examples/TestXML/testUniformizedMarkovJumps.xml usr/share/doc/beast-mcmc/examples/test.sh usr/share/doc/beast-mcmc-examples usr/share/doc/beast-mcmc-examples/changelog.Debian.gz usr/share/doc/beast-mcmc-examples/copyright