augur (24.4.0-3)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- none
- Architecture
- amd64
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 1 kB
- Size expected
- 238 kB
- Size actual
- 238 kB
- Size match
Dependencies
Required package dependencies
- python3-bcbio-gff
- python3-biopython
- python3-cvxopt
- python3-isodate
- python3-jsonschema
- python3-networkx
- python3-numpy
- python3-packaging
- python3-pandas
- python3-pyfastx
- python3-scipy
- python3-treetime (>= 0.9.4)
- python3-xopen (>= 1.7.0-1~)
- python3:any
- python3-boto3
- python3-dendropy
- python3-matplotlib
- python3-schedule
- python3-seaborn
- python3-zstandard
- seqmagick
- python3-ipdb
- mafft
- raxml
- fasttree
- vcftools
Suggested packages
Recommended additional packages
- None
Description
pipeline components for real-time virus analysis
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 4251a01c…cb649197 | |
| SHA-1 | 05fcb90a…52ac4020 | |
| SHA-256 | a27f208b…35018192 | |
| SHA-512 | 04bb2538…7483cdb8 |
Contents
Files and directories included
. usr usr/bin usr/bin/augur usr/lib usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/augur usr/lib/python3/dist-packages/augur/__init__.py usr/lib/python3/dist-packages/augur/__main__.py usr/lib/python3/dist-packages/augur/__version__.py usr/lib/python3/dist-packages/augur/align.py usr/lib/python3/dist-packages/augur/ancestral.py usr/lib/python3/dist-packages/augur/argparse_.py usr/lib/python3/dist-packages/augur/clades.py usr/lib/python3/dist-packages/augur/curate usr/lib/python3/dist-packages/augur/curate/__init__.py usr/lib/python3/dist-packages/augur/curate/format_dates.py usr/lib/python3/dist-packages/augur/curate/format_dates_directives.py usr/lib/python3/dist-packages/augur/curate/normalize_strings.py usr/lib/python3/dist-packages/augur/curate/passthru.py usr/lib/python3/dist-packages/augur/curate/titlecase.py usr/lib/python3/dist-packages/augur/data usr/lib/python3/dist-packages/augur/data/__init__.py usr/lib/python3/dist-packages/augur/data/colors.tsv usr/lib/python3/dist-packages/augur/data/lat_longs.tsv usr/lib/python3/dist-packages/augur/data/schema-annotations.json usr/lib/python3/dist-packages/augur/data/schema-auspice-config-v2.json usr/lib/python3/dist-packages/augur/data/schema-export-root-sequence.json usr/lib/python3/dist-packages/augur/data/schema-export-v1-meta.json usr/lib/python3/dist-packages/augur/data/schema-export-v1-tree.json usr/lib/python3/dist-packages/augur/data/schema-export-v2.json usr/lib/python3/dist-packages/augur/data/schema-frequencies.json usr/lib/python3/dist-packages/augur/data/schema-measurements-collection-config.json usr/lib/python3/dist-packages/augur/data/schema-measurements.json usr/lib/python3/dist-packages/augur/data/schema-tip-frequencies.json usr/lib/python3/dist-packages/augur/dates usr/lib/python3/dist-packages/augur/dates/__init__.py usr/lib/python3/dist-packages/augur/dates/ambiguous_date.py usr/lib/python3/dist-packages/augur/dates/errors.py usr/lib/python3/dist-packages/augur/distance.py usr/lib/python3/dist-packages/augur/errors.py usr/lib/python3/dist-packages/augur/export.py usr/lib/python3/dist-packages/augur/export_v1.py usr/lib/python3/dist-packages/augur/export_v2.py usr/lib/python3/dist-packages/augur/filenames.py usr/lib/python3/dist-packages/augur/filter usr/lib/python3/dist-packages/augur/filter/__init__.py usr/lib/python3/dist-packages/augur/filter/_run.py usr/lib/python3/dist-packages/augur/filter/constants.py usr/lib/python3/dist-packages/augur/filter/include_exclude_rules.py usr/lib/python3/dist-packages/augur/filter/io.py usr/lib/python3/dist-packages/augur/filter/subsample.py usr/lib/python3/dist-packages/augur/filter/validate_arguments.py usr/lib/python3/dist-packages/augur/frequencies.py usr/lib/python3/dist-packages/augur/frequency_estimators.py usr/lib/python3/dist-packages/augur/import_ usr/lib/python3/dist-packages/augur/import_/__init__.py usr/lib/python3/dist-packages/augur/import_/beast.py usr/lib/python3/dist-packages/augur/index.py usr/lib/python3/dist-packages/augur/io usr/lib/python3/dist-packages/augur/io/__init__.py usr/lib/python3/dist-packages/augur/io/file.py usr/lib/python3/dist-packages/augur/io/json.py usr/lib/python3/dist-packages/augur/io/metadata.py usr/lib/python3/dist-packages/augur/io/print.py usr/lib/python3/dist-packages/augur/io/sequences.py usr/lib/python3/dist-packages/augur/io/shell_command_runner.py usr/lib/python3/dist-packages/augur/io/strains.py usr/lib/python3/dist-packages/augur/io/vcf.py usr/lib/python3/dist-packages/augur/lbi.py usr/lib/python3/dist-packages/augur/mask.py usr/lib/python3/dist-packages/augur/measurements usr/lib/python3/dist-packages/augur/measurements/__init__.py usr/lib/python3/dist-packages/augur/measurements/concat.py usr/lib/python3/dist-packages/augur/measurements/export.py usr/lib/python3/dist-packages/augur/parse.py usr/lib/python3/dist-packages/augur/reconstruct_sequences.py usr/lib/python3/dist-packages/augur/refine.py usr/lib/python3/dist-packages/augur/sequence_traits.py usr/lib/python3/dist-packages/augur/titer_model.py usr/lib/python3/dist-packages/augur/titers.py usr/lib/python3/dist-packages/augur/traits.py usr/lib/python3/dist-packages/augur/translate.py usr/lib/python3/dist-packages/augur/tree.py usr/lib/python3/dist-packages/augur/types.py usr/lib/python3/dist-packages/augur/util_support usr/lib/python3/dist-packages/augur/util_support/__init__.py usr/lib/python3/dist-packages/augur/util_support/color_parser.py usr/lib/python3/dist-packages/augur/util_support/color_parser_line.py usr/lib/python3/dist-packages/augur/util_support/node_data.py usr/lib/python3/dist-packages/augur/util_support/node_data_file.py usr/lib/python3/dist-packages/augur/util_support/node_data_reader.py usr/lib/python3/dist-packages/augur/utils.py usr/lib/python3/dist-packages/augur/validate.py usr/lib/python3/dist-packages/augur/validate_export.py usr/lib/python3/dist-packages/augur/version.py usr/lib/python3/dist-packages/nextstrain_augur-24.4.0.egg-info usr/lib/python3/dist-packages/nextstrain_augur-24.4.0.egg-info/PKG-INFO usr/lib/python3/dist-packages/nextstrain_augur-24.4.0.egg-info/dependency_links.txt usr/lib/python3/dist-packages/nextstrain_augur-24.4.0.egg-info/entry_points.txt usr/lib/python3/dist-packages/nextstrain_augur-24.4.0.egg-info/requires.txt usr/lib/python3/dist-packages/nextstrain_augur-24.4.0.egg-info/top_level.txt usr/share usr/share/doc usr/share/doc/augur usr/share/doc/augur/changelog.Debian.gz usr/share/doc/augur/copyright usr/share/man usr/share/man/man1 usr/share/man/man1/augur.1.gz