bedtools (2.31.1+dfsg-3)

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-stonking
Repository
https://nl.archive.ubuntu.com/ubuntu
Codename
stonking
Component
universe
Source
none
Architecture
amd64
Section
universe/science
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
1.5 kB
Size expected
579.8 kB
Size actual
579.8 kB
Size match

Dependencies

Required package dependencies

  • libbz2-1.0
  • libc6 (>= 2.38)
  • libgcc-s1 (>= 3.3.1)
  • liblzma5 (>= 5.1.1alpha+20120614)
  • libstdc++6 (>= 13.1)
  • zlib1g (>= 1:1.1.4)

Suggested packages

Recommended additional packages

  • None

Description

suite of utilities for comparing genomic features

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD58cb76bd8…cbf69145
SHA-1c2219523…d549e122
SHA-256a6c1eec5…7ec0b09a
SHA-512b7bf4abb…78f2a3aa

Contents

Files and directories included

.
usr
usr/bin
usr/bin/annotateBed
usr/bin/bamToBed
usr/bin/bamToFastq
usr/bin/bed12ToBed6
usr/bin/bedToBam
usr/bin/bedToIgv
usr/bin/bedpeToBam
usr/bin/bedtools
usr/bin/closestBed
usr/bin/clusterBed
usr/bin/complementBed
usr/bin/coverageBed
usr/bin/expandCols
usr/bin/fastaFromBed
usr/bin/flankBed
usr/bin/genomeCoverageBed
usr/bin/getOverlap
usr/bin/groupBy
usr/bin/intersectBed
usr/bin/linksBed
usr/bin/mapBed
usr/bin/maskFastaFromBed
usr/bin/mergeBed
usr/bin/multiBamCov
usr/bin/multiIntersectBed
usr/bin/nucBed
usr/bin/pairToBed
usr/bin/pairToPair
usr/bin/randomBed
usr/bin/shiftBed
usr/bin/shuffleBed
usr/bin/slopBed
usr/bin/sortBed
usr/bin/subtractBed
usr/bin/tagBam
usr/bin/unionBedGraphs
usr/bin/windowBed
usr/bin/windowMaker
usr/share
usr/share/bash-completion
usr/share/bash-completion/completions
usr/share/bash-completion/completions/bedtools
usr/share/bedtools
usr/share/bedtools/genomes
usr/share/bedtools/genomes/human.hg18.genome
usr/share/bedtools/genomes/human.hg19.genome
usr/share/bedtools/genomes/human.hg38.genome
usr/share/bedtools/genomes/mouse.mm10.genome
usr/share/bedtools/genomes/mouse.mm8.genome
usr/share/bedtools/genomes/mouse.mm9.genome
usr/share/doc
usr/share/doc/bedtools
usr/share/doc/bedtools/README.md
usr/share/doc/bedtools/README.test
usr/share/doc/bedtools/changelog.Debian.gz
usr/share/doc/bedtools/copyright
usr/share/doc/bedtools/run-unit-test