deblur (1.1.1-4build1)

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-stonking
Repository
https://nl.archive.ubuntu.com/ubuntu
Codename
stonking
Component
universe
Source
none
Architecture
amd64
Section
universe/science
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
17.3 kB
Size expected
2.1 MB
Size actual
2.1 MB
Size match

Dependencies

Required package dependencies

  • python3-biom-format
  • python3-click
  • python3-h5py (>= 2.2.0)
  • python3-numpy
  • python3-scipy
  • python3-skbio
  • python3:any

Suggested packages

Recommended additional packages

  • None

Description

deconvolution for Illumina amplicon sequencing

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD5a130518b…3573f65d
SHA-1408e097c…e14be067
SHA-256c7f54279…1823f44b
SHA-512fe9ada53…d7a09db5

Contents

Files and directories included

.
usr
usr/bin
usr/bin/deblur
usr/lib
usr/lib/python3
usr/lib/python3/dist-packages
usr/lib/python3/dist-packages/deblur
usr/lib/python3/dist-packages/deblur/__init__.py
usr/lib/python3/dist-packages/deblur/deblurring.py
usr/lib/python3/dist-packages/deblur/parallel_deblur.py
usr/lib/python3/dist-packages/deblur/sequence.py
usr/lib/python3/dist-packages/deblur/support_files
usr/lib/python3/dist-packages/deblur/support_files/88_otus.fasta
usr/lib/python3/dist-packages/deblur/support_files/__init__.py
usr/lib/python3/dist-packages/deblur/support_files/artifacts.fa
usr/lib/python3/dist-packages/deblur/test
usr/lib/python3/dist-packages/deblur/test/data
usr/lib/python3/dist-packages/deblur/test/data/70_otus.fasta
usr/lib/python3/dist-packages/deblur/test/data/final.s4.biom
usr/lib/python3/dist-packages/deblur/test/data/final.s4.seqs.fa
usr/lib/python3/dist-packages/deblur/test/data/no_trim_results.fasta
usr/lib/python3/dist-packages/deblur/test/data/readme.txt
usr/lib/python3/dist-packages/deblur/test/data/seqs.fq
usr/lib/python3/dist-packages/deblur/test/data/seqs_bad.fq
usr/lib/python3/dist-packages/deblur/test/data/seqs_empty.fasta
usr/lib/python3/dist-packages/deblur/test/data/seqs_illumina1.3.fq
usr/lib/python3/dist-packages/deblur/test/data/seqs_s1.fasta
usr/lib/python3/dist-packages/deblur/test/data/seqs_s2.fasta
usr/lib/python3/dist-packages/deblur/test/data/seqs_s3.fasta
usr/lib/python3/dist-packages/deblur/test/data/seqs_s4.fasta
usr/lib/python3/dist-packages/deblur/test/data/seqs_s5.fasta
usr/lib/python3/dist-packages/deblur/test/data/simset.s1.fasta
usr/lib/python3/dist-packages/deblur/test/data/simset.s2.fasta
usr/lib/python3/dist-packages/deblur/test/data/simset.s3.fasta
usr/lib/python3/dist-packages/deblur/test/data/simset.s4.fasta
usr/lib/python3/dist-packages/deblur/test/data/simset.s5.fasta
usr/lib/python3/dist-packages/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras
usr/lib/python3/dist-packages/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras
usr/lib/python3/dist-packages/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras
usr/lib/python3/dist-packages/deblur/test/data/usecase_mixedchars
usr/lib/python3/dist-packages/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras
usr/lib/python3/dist-packages/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras
usr/lib/python3/dist-packages/deblur/test/data/usecase_mixedchars/split
usr/lib/python3/dist-packages/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq
usr/lib/python3/dist-packages/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq
usr/lib/python3/dist-packages/deblur/test/test_deblurring.py
usr/lib/python3/dist-packages/deblur/test/test_mixedcase.py
usr/lib/python3/dist-packages/deblur/test/test_parallel_deblur.py
usr/lib/python3/dist-packages/deblur/test/test_script.py
usr/lib/python3/dist-packages/deblur/test/test_sequence.py
usr/lib/python3/dist-packages/deblur/test/test_support_files.py
usr/lib/python3/dist-packages/deblur/test/test_workflow.py
usr/lib/python3/dist-packages/deblur/workflow.py
usr/lib/python3/dist-packages/deblur-1.1.1.egg-info
usr/lib/python3/dist-packages/deblur-1.1.1.egg-info/PKG-INFO
usr/lib/python3/dist-packages/deblur-1.1.1.egg-info/dependency_links.txt
usr/lib/python3/dist-packages/deblur-1.1.1.egg-info/requires.txt
usr/lib/python3/dist-packages/deblur-1.1.1.egg-info/top_level.txt
usr/share
usr/share/doc
usr/share/doc/deblur
usr/share/doc/deblur/TODO.Debian
usr/share/doc/deblur/changelog.Debian.gz
usr/share/doc/deblur/copyright