iva (1.0.11+ds-6build1)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- none
- Architecture
- amd64
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 8.8 kB
- Size expected
- 8.6 MB
- Size actual
- 8.6 MB
- Size match
Dependencies
Required package dependencies
Suggested packages
Recommended additional packages
- None
Description
iterative virus sequence assembler
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 8a8a4b3e…ecc953da | |
| SHA-1 | ff51eab0…d8172ea7 | |
| SHA-256 | 101c3a24…e7657df2 | |
| SHA-512 | d10214b0…0ba6ca4e |
Contents
Files and directories included
. usr usr/bin usr/bin/iva usr/bin/iva_qc usr/bin/iva_qc_make_db usr/lib usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/iva usr/lib/python3/dist-packages/iva/__init__.py usr/lib/python3/dist-packages/iva/assembly.py usr/lib/python3/dist-packages/iva/common.py usr/lib/python3/dist-packages/iva/contig.py usr/lib/python3/dist-packages/iva/contig_trim.py usr/lib/python3/dist-packages/iva/edge.py usr/lib/python3/dist-packages/iva/egg_extract.py usr/lib/python3/dist-packages/iva/external_progs.py usr/lib/python3/dist-packages/iva/gage usr/lib/python3/dist-packages/iva/gage/GetFastaStats$ContigAt.class usr/lib/python3/dist-packages/iva/gage/GetFastaStats.class usr/lib/python3/dist-packages/iva/gage/GetFastaStats.java usr/lib/python3/dist-packages/iva/gage/SizeFasta.class usr/lib/python3/dist-packages/iva/gage/SizeFasta.java usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.class usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.java usr/lib/python3/dist-packages/iva/gage/Utils$Pair.class usr/lib/python3/dist-packages/iva/gage/Utils$ToProtein.class usr/lib/python3/dist-packages/iva/gage/Utils$Translate.class usr/lib/python3/dist-packages/iva/gage/Utils.class usr/lib/python3/dist-packages/iva/gage/Utils.java usr/lib/python3/dist-packages/iva/gage/colsum.pl usr/lib/python3/dist-packages/iva/gage/getCorrectnessStats.sh usr/lib/python3/dist-packages/iva/gage/getMummerStats.sh usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$Scaffold.class usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.class usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.java usr/lib/python3/dist-packages/iva/graph.py usr/lib/python3/dist-packages/iva/kcount.py usr/lib/python3/dist-packages/iva/kmers.py usr/lib/python3/dist-packages/iva/kraken.py usr/lib/python3/dist-packages/iva/mapping.py usr/lib/python3/dist-packages/iva/mummer.py usr/lib/python3/dist-packages/iva/qc.py usr/lib/python3/dist-packages/iva/qc_external.py usr/lib/python3/dist-packages/iva/ratt usr/lib/python3/dist-packages/iva/ratt/embl2gff.pl usr/lib/python3/dist-packages/iva/ratt/genbank2embl.pl usr/lib/python3/dist-packages/iva/ratt/main.ratt.pl usr/lib/python3/dist-packages/iva/ratt/ratt.config usr/lib/python3/dist-packages/iva/ratt/ratt.config.hiv usr/lib/python3/dist-packages/iva/ratt/ratt_correction.pm usr/lib/python3/dist-packages/iva/ratt/start.ratt.sh usr/lib/python3/dist-packages/iva/read_trim usr/lib/python3/dist-packages/iva/read_trim/adapters.fasta usr/lib/python3/dist-packages/iva/read_trim.py usr/lib/python3/dist-packages/iva/seed.py usr/lib/python3/dist-packages/iva/seed_processor.py usr/lib/python3/dist-packages/iva/test_data_runner.py usr/lib/python3/dist-packages/iva/test_run_data usr/lib/python3/dist-packages/iva/test_run_data/hiv_pcr_primers.fa usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_no_trimmomatic.fasta usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_with_trimmomatic.fasta usr/lib/python3/dist-packages/iva/test_run_data/reads_1.fq.gz usr/lib/python3/dist-packages/iva/test_run_data/reads_2.fq.gz usr/lib/python3/dist-packages/iva/test_run_data/reference.fasta usr/lib/python3/dist-packages/iva-1.0.9.egg-info usr/lib/python3/dist-packages/iva-1.0.9.egg-info/PKG-INFO usr/lib/python3/dist-packages/iva-1.0.9.egg-info/dependency_links.txt usr/lib/python3/dist-packages/iva-1.0.9.egg-info/requires.txt usr/lib/python3/dist-packages/iva-1.0.9.egg-info/top_level.txt usr/share usr/share/doc usr/share/doc/iva usr/share/doc/iva/changelog.Debian.gz usr/share/doc/iva/copyright usr/share/man usr/share/man/man1 usr/share/man/man1/iva.1.gz usr/share/man/man1/iva_qc.1.gz usr/share/man/man1/iva_qc_make_db.1.gz