libblasr-dev (5.3.5+dfsg-11)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- pbseqlib
- Architecture
- amd64
- Section
- universe/libdevel
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 16 kB
- Size expected
- 2.4 MB
- Size actual
- 2.4 MB
- Size match
Dependencies
Required package dependencies
Suggested packages
Recommended additional packages
- None
Description
tools for aligning PacBio reads to target sequences (development files)
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | f949be56…d7f131a3 | |
| SHA-1 | 349d07b3…7d69a66e | |
| SHA-256 | 7c430616…db344c47 | |
| SHA-512 | a27ba765…fe1a7283 |
Contents
Files and directories included
. usr usr/include usr/include/pbseq usr/include/pbseq/LibBlasrConfig.h usr/include/pbseq/alignment usr/include/pbseq/alignment/MappingMetrics.hpp usr/include/pbseq/alignment/algorithms usr/include/pbseq/alignment/algorithms/alignment usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp usr/include/pbseq/alignment/algorithms/alignment/AffineKBandAlign.hpp usr/include/pbseq/alignment/algorithms/alignment/AlignmentFormats.hpp usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp usr/include/pbseq/alignment/algorithms/alignment/BaseScoreFunction.hpp usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp usr/include/pbseq/alignment/algorithms/alignment/ExtendAlign.hpp usr/include/pbseq/alignment/algorithms/alignment/FullQVAlign.hpp usr/include/pbseq/alignment/algorithms/alignment/GraphPaper.hpp usr/include/pbseq/alignment/algorithms/alignment/GraphPaperImpl.hpp usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp usr/include/pbseq/alignment/algorithms/alignment/IDSScoreFunction.hpp usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp usr/include/pbseq/alignment/algorithms/alignment/OneGapAlignment.hpp usr/include/pbseq/alignment/algorithms/alignment/QualityValueScoreFunction.hpp usr/include/pbseq/alignment/algorithms/alignment/SDPAlign.hpp usr/include/pbseq/alignment/algorithms/alignment/SDPAlignImpl.hpp usr/include/pbseq/alignment/algorithms/alignment/SWAlign.hpp usr/include/pbseq/alignment/algorithms/alignment/SWAlignImpl.hpp usr/include/pbseq/alignment/algorithms/alignment/ScoreMatrices.hpp usr/include/pbseq/alignment/algorithms/alignment/StringToScoreMatrix.hpp usr/include/pbseq/alignment/algorithms/alignment/sdp usr/include/pbseq/alignment/algorithms/alignment/sdp/FragmentSort.hpp usr/include/pbseq/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp usr/include/pbseq/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPColumn.hpp usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPFragment.hpp usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPSet.hpp usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp usr/include/pbseq/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h usr/include/pbseq/alignment/algorithms/anchoring usr/include/pbseq/alignment/algorithms/anchoring/BWTSearch.hpp usr/include/pbseq/alignment/algorithms/anchoring/BWTSearchImpl.hpp usr/include/pbseq/alignment/algorithms/anchoring/BasicEndpoint.hpp usr/include/pbseq/alignment/algorithms/anchoring/BasicEndpointImpl.hpp usr/include/pbseq/alignment/algorithms/anchoring/ClusterProbability.hpp usr/include/pbseq/alignment/algorithms/anchoring/Coordinate.hpp usr/include/pbseq/alignment/algorithms/anchoring/FindMaxInterval.hpp usr/include/pbseq/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp usr/include/pbseq/alignment/algorithms/anchoring/GlobalChain.hpp usr/include/pbseq/alignment/algorithms/anchoring/GlobalChainImpl.hpp usr/include/pbseq/alignment/algorithms/anchoring/LISPValue.hpp usr/include/pbseq/alignment/algorithms/anchoring/LISPValueImpl.hpp usr/include/pbseq/alignment/algorithms/anchoring/LISPValueWeightor.hpp usr/include/pbseq/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp usr/include/pbseq/alignment/algorithms/anchoring/LISQValueWeightor.hpp usr/include/pbseq/alignment/algorithms/anchoring/LISSizeWeightor.hpp usr/include/pbseq/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp usr/include/pbseq/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp usr/include/pbseq/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp usr/include/pbseq/alignment/algorithms/anchoring/MapBySuffixArray.hpp usr/include/pbseq/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp usr/include/pbseq/alignment/algorithms/anchoring/PrioritySearchTree.hpp usr/include/pbseq/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp usr/include/pbseq/alignment/algorithms/anchoring/ScoreAnchors.hpp usr/include/pbseq/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp usr/include/pbseq/alignment/algorithms/compare usr/include/pbseq/alignment/algorithms/compare/CompareStrings.hpp usr/include/pbseq/alignment/algorithms/sorting usr/include/pbseq/alignment/algorithms/sorting/DifferenceCovers.hpp usr/include/pbseq/alignment/algorithms/sorting/Karkkainen.hpp usr/include/pbseq/alignment/algorithms/sorting/LightweightSuffixArray.hpp usr/include/pbseq/alignment/algorithms/sorting/MultikeyQuicksort.hpp usr/include/pbseq/alignment/algorithms/sorting/qsufsort.hpp usr/include/pbseq/alignment/bwt usr/include/pbseq/alignment/bwt/BWT.hpp usr/include/pbseq/alignment/bwt/Occ.hpp usr/include/pbseq/alignment/bwt/PackedHash.hpp usr/include/pbseq/alignment/bwt/Pos.hpp usr/include/pbseq/alignment/datastructures usr/include/pbseq/alignment/datastructures/alignment usr/include/pbseq/alignment/datastructures/alignment/AlignedPair.h usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp usr/include/pbseq/alignment/datastructures/alignment/AlignmentCandidate.hpp usr/include/pbseq/alignment/datastructures/alignment/AlignmentContext.hpp usr/include/pbseq/alignment/datastructures/alignment/AlignmentGapList.h usr/include/pbseq/alignment/datastructures/alignment/AlignmentMap.hpp usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp usr/include/pbseq/alignment/datastructures/alignment/ByteAlignment.h usr/include/pbseq/alignment/datastructures/alignment/CmpFile.hpp usr/include/pbseq/alignment/datastructures/alignment/CmpIndexedStringTable.h usr/include/pbseq/alignment/datastructures/alignment/CmpReadGroupTable.h usr/include/pbseq/alignment/datastructures/alignment/CmpRefSeqTable.h usr/include/pbseq/alignment/datastructures/alignment/FilterCriteria.hpp usr/include/pbseq/alignment/datastructures/alignment/Path.h usr/include/pbseq/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp usr/include/pbseq/alignment/datastructures/alignmentset usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp usr/include/pbseq/alignment/datastructures/alignmentset/SAMQVConversion.hpp usr/include/pbseq/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp usr/include/pbseq/alignment/datastructures/anchoring usr/include/pbseq/alignment/datastructures/anchoring/AnchorParameters.hpp usr/include/pbseq/alignment/datastructures/anchoring/ClusterList.hpp usr/include/pbseq/alignment/datastructures/anchoring/MatchPos.hpp usr/include/pbseq/alignment/datastructures/anchoring/WeightedInterval.hpp usr/include/pbseq/alignment/files usr/include/pbseq/alignment/files/BaseSequenceIO.hpp usr/include/pbseq/alignment/files/CCSIterator.hpp usr/include/pbseq/alignment/files/FragmentCCSIterator.hpp usr/include/pbseq/alignment/files/ReaderAgglomerate.hpp usr/include/pbseq/alignment/files/ReaderAgglomerateImpl.hpp usr/include/pbseq/alignment/format usr/include/pbseq/alignment/format/BAMPrinter.hpp usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp usr/include/pbseq/alignment/format/CompareSequencesPrinter.hpp usr/include/pbseq/alignment/format/CompareSequencesPrinterImpl.hpp usr/include/pbseq/alignment/format/IntervalPrinter.hpp usr/include/pbseq/alignment/format/SAMHeaderPrinter.hpp usr/include/pbseq/alignment/format/SAMPrinter.hpp usr/include/pbseq/alignment/format/SAMPrinterImpl.hpp usr/include/pbseq/alignment/format/StickAlignmentPrinter.hpp usr/include/pbseq/alignment/format/SummaryPrinter.hpp usr/include/pbseq/alignment/format/VulgarPrinter.hpp usr/include/pbseq/alignment/format/XMLPrinter.hpp usr/include/pbseq/alignment/ipc usr/include/pbseq/alignment/ipc/SharedMemoryAllocator.hpp usr/include/pbseq/alignment/query usr/include/pbseq/alignment/query/PbiFilterZmwGroupQuery.h usr/include/pbseq/alignment/query/SequentialZmwGroupQuery.h usr/include/pbseq/alignment/qvs usr/include/pbseq/alignment/qvs/QualityValueProfile.hpp usr/include/pbseq/alignment/simulator usr/include/pbseq/alignment/simulator/CDFMap.hpp usr/include/pbseq/alignment/simulator/ContextOutputList.hpp usr/include/pbseq/alignment/simulator/ContextSample.hpp usr/include/pbseq/alignment/simulator/ContextSet.hpp usr/include/pbseq/alignment/simulator/LengthHistogram.hpp usr/include/pbseq/alignment/simulator/OutputList.hpp usr/include/pbseq/alignment/simulator/OutputSample.hpp usr/include/pbseq/alignment/simulator/OutputSampleList.hpp usr/include/pbseq/alignment/simulator/OutputSampleListSet.hpp usr/include/pbseq/alignment/simulator/QualitySample.hpp usr/include/pbseq/alignment/statistics usr/include/pbseq/alignment/statistics/AnchorDistributionTable.hpp usr/include/pbseq/alignment/statistics/LookupAnchorDistribution.hpp usr/include/pbseq/alignment/statistics/StatUtils.hpp usr/include/pbseq/alignment/statistics/StatUtilsImpl.hpp usr/include/pbseq/alignment/statistics/VarianceAccumulator.hpp usr/include/pbseq/alignment/statistics/VarianceAccumulatorImpl.hpp usr/include/pbseq/alignment/statistics/cdfs.hpp usr/include/pbseq/alignment/statistics/pdfs.hpp usr/include/pbseq/alignment/suffixarray usr/include/pbseq/alignment/suffixarray/LCPTable.hpp usr/include/pbseq/alignment/suffixarray/SharedSuffixArray.hpp usr/include/pbseq/alignment/suffixarray/SuffixArray.hpp usr/include/pbseq/alignment/suffixarray/SuffixArrayTypes.hpp usr/include/pbseq/alignment/suffixarray/ssort.hpp usr/include/pbseq/alignment/tuples usr/include/pbseq/alignment/tuples/BaseTuple.hpp usr/include/pbseq/alignment/tuples/CompressedDNATuple.hpp usr/include/pbseq/alignment/tuples/CountedTuple.h usr/include/pbseq/alignment/tuples/DNATuple.hpp usr/include/pbseq/alignment/tuples/DNATupleImpl.hpp usr/include/pbseq/alignment/tuples/DNATupleList.h usr/include/pbseq/alignment/tuples/HashedTupleList.hpp usr/include/pbseq/alignment/tuples/HashedTupleListImpl.hpp usr/include/pbseq/alignment/tuples/TupleCountTable.hpp usr/include/pbseq/alignment/tuples/TupleCountTableImpl.hpp usr/include/pbseq/alignment/tuples/TupleList.hpp usr/include/pbseq/alignment/tuples/TupleListImpl.hpp usr/include/pbseq/alignment/tuples/TupleMask.h usr/include/pbseq/alignment/tuples/TupleMatching.hpp usr/include/pbseq/alignment/tuples/TupleMatchingImpl.hpp usr/include/pbseq/alignment/tuples/TupleMetrics.hpp usr/include/pbseq/alignment/tuples/TupleOperations.h usr/include/pbseq/alignment/tuples/TupleTranslations.h usr/include/pbseq/alignment/tuples/tuple.h usr/include/pbseq/alignment/utils usr/include/pbseq/alignment/utils/FileOfFileNames.hpp usr/include/pbseq/alignment/utils/FileUtils.hpp usr/include/pbseq/alignment/utils/LogUtils.hpp usr/include/pbseq/alignment/utils/PhredUtils.hpp usr/include/pbseq/alignment/utils/RangeUtils.hpp usr/include/pbseq/alignment/utils/RegionUtils.hpp usr/include/pbseq/alignment/utils/RegionUtilsImpl.hpp usr/include/pbseq/alignment/utils/SimpleXMLUtils.hpp usr/include/pbseq/libblasr usr/include/pbseq/libblasr/alignment usr/include/pbseq/libblasr/alignment/MappingMetrics.hpp usr/include/pbseq/libblasr/alignment/algorithms usr/include/pbseq/libblasr/alignment/algorithms/alignment usr/include/pbseq/libblasr/alignment/algorithms/alignment/AffineGuidedAlign.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/AffineKBandAlign.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/AlignmentFormats.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/AlignmentUtils.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/BaseScoreFunction.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/ExtendAlign.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/FullQVAlign.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/GraphPaper.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/GraphPaperImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/GuidedAlign.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/IDSScoreFunction.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/KBandAlign.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/OneGapAlignment.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/QualityValueScoreFunction.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/SDPAlign.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/SDPAlignImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/SWAlign.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/SWAlignImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/ScoreMatrices.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/StringToScoreMatrix.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/FragmentSort.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/SDPColumn.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/SDPFragment.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/SDPSet.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h usr/include/pbseq/libblasr/alignment/algorithms/anchoring usr/include/pbseq/libblasr/alignment/algorithms/anchoring/BWTSearch.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/BWTSearchImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/BasicEndpoint.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/BasicEndpointImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/ClusterProbability.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/Coordinate.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/FindMaxInterval.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/GlobalChain.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/GlobalChainImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISPValue.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISPValueImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISPValueWeightor.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISQValueWeightor.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISSizeWeightor.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/MapBySuffixArray.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/PrioritySearchTree.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/ScoreAnchors.hpp usr/include/pbseq/libblasr/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp usr/include/pbseq/libblasr/alignment/algorithms/compare usr/include/pbseq/libblasr/alignment/algorithms/compare/CompareStrings.hpp usr/include/pbseq/libblasr/alignment/algorithms/sorting usr/include/pbseq/libblasr/alignment/algorithms/sorting/DifferenceCovers.hpp usr/include/pbseq/libblasr/alignment/algorithms/sorting/Karkkainen.hpp usr/include/pbseq/libblasr/alignment/algorithms/sorting/LightweightSuffixArray.hpp usr/include/pbseq/libblasr/alignment/algorithms/sorting/MultikeyQuicksort.hpp usr/include/pbseq/libblasr/alignment/algorithms/sorting/qsufsort.hpp usr/include/pbseq/libblasr/alignment/bwt usr/include/pbseq/libblasr/alignment/bwt/BWT.hpp usr/include/pbseq/libblasr/alignment/bwt/Occ.hpp usr/include/pbseq/libblasr/alignment/bwt/PackedHash.hpp usr/include/pbseq/libblasr/alignment/bwt/Pos.hpp usr/include/pbseq/libblasr/alignment/datastructures usr/include/pbseq/libblasr/alignment/datastructures/alignment usr/include/pbseq/libblasr/alignment/datastructures/alignment/AlignedPair.h usr/include/pbseq/libblasr/alignment/datastructures/alignment/Alignment.hpp usr/include/pbseq/libblasr/alignment/datastructures/alignment/AlignmentCandidate.hpp usr/include/pbseq/libblasr/alignment/datastructures/alignment/AlignmentContext.hpp usr/include/pbseq/libblasr/alignment/datastructures/alignment/AlignmentGapList.h usr/include/pbseq/libblasr/alignment/datastructures/alignment/AlignmentMap.hpp usr/include/pbseq/libblasr/alignment/datastructures/alignment/AlignmentStats.hpp usr/include/pbseq/libblasr/alignment/datastructures/alignment/ByteAlignment.h usr/include/pbseq/libblasr/alignment/datastructures/alignment/CmpFile.hpp usr/include/pbseq/libblasr/alignment/datastructures/alignment/CmpIndexedStringTable.h usr/include/pbseq/libblasr/alignment/datastructures/alignment/CmpReadGroupTable.h usr/include/pbseq/libblasr/alignment/datastructures/alignment/CmpRefSeqTable.h usr/include/pbseq/libblasr/alignment/datastructures/alignment/FilterCriteria.hpp usr/include/pbseq/libblasr/alignment/datastructures/alignment/Path.h usr/include/pbseq/libblasr/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp usr/include/pbseq/libblasr/alignment/datastructures/alignmentset usr/include/pbseq/libblasr/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp usr/include/pbseq/libblasr/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp usr/include/pbseq/libblasr/alignment/datastructures/alignmentset/SAMQVConversion.hpp usr/include/pbseq/libblasr/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp usr/include/pbseq/libblasr/alignment/datastructures/anchoring usr/include/pbseq/libblasr/alignment/datastructures/anchoring/AnchorParameters.hpp usr/include/pbseq/libblasr/alignment/datastructures/anchoring/ClusterList.hpp usr/include/pbseq/libblasr/alignment/datastructures/anchoring/MatchPos.hpp usr/include/pbseq/libblasr/alignment/datastructures/anchoring/WeightedInterval.hpp usr/include/pbseq/libblasr/alignment/files usr/include/pbseq/libblasr/alignment/files/BaseSequenceIO.hpp usr/include/pbseq/libblasr/alignment/files/CCSIterator.hpp usr/include/pbseq/libblasr/alignment/files/FragmentCCSIterator.hpp usr/include/pbseq/libblasr/alignment/files/ReaderAgglomerate.hpp usr/include/pbseq/libblasr/alignment/files/ReaderAgglomerateImpl.hpp usr/include/pbseq/libblasr/alignment/format usr/include/pbseq/libblasr/alignment/format/BAMPrinter.hpp usr/include/pbseq/libblasr/alignment/format/BAMPrinterImpl.hpp usr/include/pbseq/libblasr/alignment/format/CompareSequencesPrinter.hpp usr/include/pbseq/libblasr/alignment/format/CompareSequencesPrinterImpl.hpp usr/include/pbseq/libblasr/alignment/format/IntervalPrinter.hpp usr/include/pbseq/libblasr/alignment/format/SAMHeaderPrinter.hpp usr/include/pbseq/libblasr/alignment/format/SAMPrinter.hpp usr/include/pbseq/libblasr/alignment/format/SAMPrinterImpl.hpp usr/include/pbseq/libblasr/alignment/format/StickAlignmentPrinter.hpp usr/include/pbseq/libblasr/alignment/format/SummaryPrinter.hpp usr/include/pbseq/libblasr/alignment/format/VulgarPrinter.hpp usr/include/pbseq/libblasr/alignment/format/XMLPrinter.hpp usr/include/pbseq/libblasr/alignment/ipc usr/include/pbseq/libblasr/alignment/ipc/SharedMemoryAllocator.hpp usr/include/pbseq/libblasr/alignment/query usr/include/pbseq/libblasr/alignment/query/PbiFilterZmwGroupQuery.h usr/include/pbseq/libblasr/alignment/query/SequentialZmwGroupQuery.h usr/include/pbseq/libblasr/alignment/qvs usr/include/pbseq/libblasr/alignment/qvs/QualityValueProfile.hpp usr/include/pbseq/libblasr/alignment/simulator usr/include/pbseq/libblasr/alignment/simulator/CDFMap.hpp usr/include/pbseq/libblasr/alignment/simulator/ContextOutputList.hpp usr/include/pbseq/libblasr/alignment/simulator/ContextSample.hpp usr/include/pbseq/libblasr/alignment/simulator/ContextSet.hpp usr/include/pbseq/libblasr/alignment/simulator/LengthHistogram.hpp usr/include/pbseq/libblasr/alignment/simulator/OutputList.hpp usr/include/pbseq/libblasr/alignment/simulator/OutputSample.hpp usr/include/pbseq/libblasr/alignment/simulator/OutputSampleList.hpp usr/include/pbseq/libblasr/alignment/simulator/OutputSampleListSet.hpp usr/include/pbseq/libblasr/alignment/simulator/QualitySample.hpp usr/include/pbseq/libblasr/alignment/statistics usr/include/pbseq/libblasr/alignment/statistics/AnchorDistributionTable.hpp usr/include/pbseq/libblasr/alignment/statistics/LookupAnchorDistribution.hpp usr/include/pbseq/libblasr/alignment/statistics/StatUtils.hpp usr/include/pbseq/libblasr/alignment/statistics/StatUtilsImpl.hpp usr/include/pbseq/libblasr/alignment/statistics/VarianceAccumulator.hpp usr/include/pbseq/libblasr/alignment/statistics/VarianceAccumulatorImpl.hpp usr/include/pbseq/libblasr/alignment/statistics/cdfs.hpp usr/include/pbseq/libblasr/alignment/statistics/pdfs.hpp usr/include/pbseq/libblasr/alignment/suffixarray usr/include/pbseq/libblasr/alignment/suffixarray/LCPTable.hpp usr/include/pbseq/libblasr/alignment/suffixarray/SharedSuffixArray.hpp usr/include/pbseq/libblasr/alignment/suffixarray/SuffixArray.hpp usr/include/pbseq/libblasr/alignment/suffixarray/SuffixArrayTypes.hpp usr/include/pbseq/libblasr/alignment/suffixarray/ssort.hpp usr/include/pbseq/libblasr/alignment/tuples usr/include/pbseq/libblasr/alignment/tuples/BaseTuple.hpp usr/include/pbseq/libblasr/alignment/tuples/CompressedDNATuple.hpp usr/include/pbseq/libblasr/alignment/tuples/CountedTuple.h usr/include/pbseq/libblasr/alignment/tuples/DNATuple.hpp usr/include/pbseq/libblasr/alignment/tuples/DNATupleImpl.hpp usr/include/pbseq/libblasr/alignment/tuples/DNATupleList.h usr/include/pbseq/libblasr/alignment/tuples/HashedTupleList.hpp usr/include/pbseq/libblasr/alignment/tuples/HashedTupleListImpl.hpp usr/include/pbseq/libblasr/alignment/tuples/TupleCountTable.hpp usr/include/pbseq/libblasr/alignment/tuples/TupleCountTableImpl.hpp usr/include/pbseq/libblasr/alignment/tuples/TupleList.hpp usr/include/pbseq/libblasr/alignment/tuples/TupleListImpl.hpp usr/include/pbseq/libblasr/alignment/tuples/TupleMask.h usr/include/pbseq/libblasr/alignment/tuples/TupleMatching.hpp usr/include/pbseq/libblasr/alignment/tuples/TupleMatchingImpl.hpp usr/include/pbseq/libblasr/alignment/tuples/TupleMetrics.hpp usr/include/pbseq/libblasr/alignment/tuples/TupleOperations.h usr/include/pbseq/libblasr/alignment/tuples/TupleTranslations.h usr/include/pbseq/libblasr/alignment/tuples/tuple.h usr/include/pbseq/libblasr/alignment/utils usr/include/pbseq/libblasr/alignment/utils/FileOfFileNames.hpp usr/include/pbseq/libblasr/alignment/utils/FileUtils.hpp usr/include/pbseq/libblasr/alignment/utils/LogUtils.hpp usr/include/pbseq/libblasr/alignment/utils/PhredUtils.hpp usr/include/pbseq/libblasr/alignment/utils/RangeUtils.hpp usr/include/pbseq/libblasr/alignment/utils/RegionUtils.hpp usr/include/pbseq/libblasr/alignment/utils/RegionUtilsImpl.hpp usr/include/pbseq/libblasr/alignment/utils/SimpleXMLUtils.hpp usr/include/pbseq/libblasr/hdf usr/include/pbseq/libblasr/hdf/BufferedHDF2DArray.hpp usr/include/pbseq/libblasr/hdf/BufferedHDF2DArrayImpl.hpp usr/include/pbseq/libblasr/hdf/BufferedHDFArray.hpp usr/include/pbseq/libblasr/hdf/BufferedHDFArrayImpl.hpp usr/include/pbseq/libblasr/hdf/DatasetCollection.hpp usr/include/pbseq/libblasr/hdf/DatasetCollectionImpl.hpp usr/include/pbseq/libblasr/hdf/HDF2DArray.hpp usr/include/pbseq/libblasr/hdf/HDFAlnGroup.hpp usr/include/pbseq/libblasr/hdf/HDFAlnGroupGroup.hpp usr/include/pbseq/libblasr/hdf/HDFAlnInfoGroup.hpp usr/include/pbseq/libblasr/hdf/HDFArray.hpp usr/include/pbseq/libblasr/hdf/HDFAtom.hpp usr/include/pbseq/libblasr/hdf/HDFAttributable.hpp usr/include/pbseq/libblasr/hdf/HDFBasReader.hpp usr/include/pbseq/libblasr/hdf/HDFBasWriter.hpp usr/include/pbseq/libblasr/hdf/HDFBaseCallsWriter.hpp usr/include/pbseq/libblasr/hdf/HDFBaxWriter.hpp usr/include/pbseq/libblasr/hdf/HDFCCSReader.hpp usr/include/pbseq/libblasr/hdf/HDFCmpData.hpp usr/include/pbseq/libblasr/hdf/HDFCmpExperimentGroup.hpp usr/include/pbseq/libblasr/hdf/HDFCmpFile.hpp usr/include/pbseq/libblasr/hdf/HDFCmpReader.hpp usr/include/pbseq/libblasr/hdf/HDFCmpRefAlignmentGroup.hpp usr/include/pbseq/libblasr/hdf/HDFCmpRootGroup.hpp usr/include/pbseq/libblasr/hdf/HDFCmpSupportedFields.hpp usr/include/pbseq/libblasr/hdf/HDFCommonFG.hpp usr/include/pbseq/libblasr/hdf/HDFConfig.hpp usr/include/pbseq/libblasr/hdf/HDFData.hpp usr/include/pbseq/libblasr/hdf/HDFFile.hpp usr/include/pbseq/libblasr/hdf/HDFFileLogGroup.hpp usr/include/pbseq/libblasr/hdf/HDFGroup.hpp usr/include/pbseq/libblasr/hdf/HDFMovieInfoGroup.hpp usr/include/pbseq/libblasr/hdf/HDFNewBasReader.hpp usr/include/pbseq/libblasr/hdf/HDFPlsReader.hpp usr/include/pbseq/libblasr/hdf/HDFPlsWriter.hpp usr/include/pbseq/libblasr/hdf/HDFPulseCallsWriter.hpp usr/include/pbseq/libblasr/hdf/HDFPulseDataFile.hpp usr/include/pbseq/libblasr/hdf/HDFPulseWriter.hpp usr/include/pbseq/libblasr/hdf/HDFRefGroupGroup.hpp usr/include/pbseq/libblasr/hdf/HDFRefInfoGroup.hpp usr/include/pbseq/libblasr/hdf/HDFRegionTableReader.hpp usr/include/pbseq/libblasr/hdf/HDFRegionTableWriter.hpp usr/include/pbseq/libblasr/hdf/HDFRegionsWriter.hpp usr/include/pbseq/libblasr/hdf/HDFSMRTSequenceReader.hpp usr/include/pbseq/libblasr/hdf/HDFScanDataReader.hpp usr/include/pbseq/libblasr/hdf/HDFScanDataWriter.hpp usr/include/pbseq/libblasr/hdf/HDFSentinalFile.hpp usr/include/pbseq/libblasr/hdf/HDFUtils.hpp usr/include/pbseq/libblasr/hdf/HDFWriteBuffer.hpp usr/include/pbseq/libblasr/hdf/HDFWriterBase.hpp usr/include/pbseq/libblasr/hdf/HDFZMWMetricsWriter.hpp usr/include/pbseq/libblasr/hdf/HDFZMWReader.hpp usr/include/pbseq/libblasr/hdf/HDFZMWWriter.hpp usr/include/pbseq/libblasr/pbdata usr/include/pbseq/libblasr/pbdata/CCSSequence.hpp usr/include/pbseq/libblasr/pbdata/ChangeListID.hpp usr/include/pbseq/libblasr/pbdata/CommandLineParser.hpp usr/include/pbseq/libblasr/pbdata/Compare4BitCompressed.hpp usr/include/pbseq/libblasr/pbdata/CompressedDNASequence.hpp usr/include/pbseq/libblasr/pbdata/CompressedSequence.hpp usr/include/pbseq/libblasr/pbdata/CompressedSequenceImpl.hpp usr/include/pbseq/libblasr/pbdata/DNASequence.hpp usr/include/pbseq/libblasr/pbdata/Enumerations.h usr/include/pbseq/libblasr/pbdata/FASTAReader.hpp usr/include/pbseq/libblasr/pbdata/FASTASequence.hpp usr/include/pbseq/libblasr/pbdata/FASTQReader.hpp usr/include/pbseq/libblasr/pbdata/FASTQSequence.hpp usr/include/pbseq/libblasr/pbdata/GFFFile.hpp usr/include/pbseq/libblasr/pbdata/MD5Utils.hpp usr/include/pbseq/libblasr/pbdata/MD5UtilsImpl.hpp usr/include/pbseq/libblasr/pbdata/NucConversion.hpp usr/include/pbseq/libblasr/pbdata/PacBioDefs.h usr/include/pbseq/libblasr/pbdata/PackedDNASequence.hpp usr/include/pbseq/libblasr/pbdata/PrettyException.hpp usr/include/pbseq/libblasr/pbdata/ReverseCompressIndex.hpp usr/include/pbseq/libblasr/pbdata/SMRTSequence.hpp usr/include/pbseq/libblasr/pbdata/SeqUtils.hpp usr/include/pbseq/libblasr/pbdata/SeqUtilsImpl.hpp usr/include/pbseq/libblasr/pbdata/StringUtils.hpp usr/include/pbseq/libblasr/pbdata/Types.h usr/include/pbseq/libblasr/pbdata/VectorUtils.hpp usr/include/pbseq/libblasr/pbdata/alignment usr/include/pbseq/libblasr/pbdata/alignment/CmpAlignment.hpp usr/include/pbseq/libblasr/pbdata/alignment/CmpAlignmentImpl.hpp usr/include/pbseq/libblasr/pbdata/amos usr/include/pbseq/libblasr/pbdata/amos/AfgBasWriter.hpp usr/include/pbseq/libblasr/pbdata/defs.h usr/include/pbseq/libblasr/pbdata/loadpulses usr/include/pbseq/libblasr/pbdata/loadpulses/MetricField.hpp usr/include/pbseq/libblasr/pbdata/loadpulses/MovieAlnIndexLookupTable.hpp usr/include/pbseq/libblasr/pbdata/matrix usr/include/pbseq/libblasr/pbdata/matrix/FlatMatrix.hpp usr/include/pbseq/libblasr/pbdata/matrix/FlatMatrixImpl.hpp usr/include/pbseq/libblasr/pbdata/matrix/Matrix.hpp usr/include/pbseq/libblasr/pbdata/matrix/MatrixImpl.hpp usr/include/pbseq/libblasr/pbdata/metagenome usr/include/pbseq/libblasr/pbdata/metagenome/FindRandomSequence.hpp usr/include/pbseq/libblasr/pbdata/metagenome/SequenceIndexDatabase.hpp usr/include/pbseq/libblasr/pbdata/metagenome/SequenceIndexDatabaseImpl.hpp usr/include/pbseq/libblasr/pbdata/metagenome/TitleTable.hpp usr/include/pbseq/libblasr/pbdata/qvs usr/include/pbseq/libblasr/pbdata/qvs/QualityTransform.hpp usr/include/pbseq/libblasr/pbdata/qvs/QualityValue.hpp usr/include/pbseq/libblasr/pbdata/qvs/QualityValueVector.hpp usr/include/pbseq/libblasr/pbdata/qvs/QualityValueVectorImpl.hpp usr/include/pbseq/libblasr/pbdata/reads usr/include/pbseq/libblasr/pbdata/reads/AcqParams.hpp usr/include/pbseq/libblasr/pbdata/reads/BaseFile.hpp usr/include/pbseq/libblasr/pbdata/reads/BaseFileImpl.hpp usr/include/pbseq/libblasr/pbdata/reads/HoleXY.hpp usr/include/pbseq/libblasr/pbdata/reads/PulseBaseCommon.hpp usr/include/pbseq/libblasr/pbdata/reads/PulseFile.hpp usr/include/pbseq/libblasr/pbdata/reads/PulseFileImpl.hpp usr/include/pbseq/libblasr/pbdata/reads/ReadInterval.hpp usr/include/pbseq/libblasr/pbdata/reads/ReadType.hpp usr/include/pbseq/libblasr/pbdata/reads/RegionAnnotation.hpp usr/include/pbseq/libblasr/pbdata/reads/RegionAnnotations.hpp usr/include/pbseq/libblasr/pbdata/reads/RegionTable.hpp usr/include/pbseq/libblasr/pbdata/reads/RegionTypeMap.hpp usr/include/pbseq/libblasr/pbdata/reads/ScanData.hpp usr/include/pbseq/libblasr/pbdata/reads/ZMWGroupEntry.hpp usr/include/pbseq/libblasr/pbdata/saf usr/include/pbseq/libblasr/pbdata/saf/AlnGroup.hpp usr/include/pbseq/libblasr/pbdata/saf/AlnInfo.hpp usr/include/pbseq/libblasr/pbdata/saf/MovieInfo.hpp usr/include/pbseq/libblasr/pbdata/saf/RefGroup.hpp usr/include/pbseq/libblasr/pbdata/saf/RefInfo.hpp usr/include/pbseq/libblasr/pbdata/sam usr/include/pbseq/libblasr/pbdata/sam/AlignmentSet.hpp usr/include/pbseq/libblasr/pbdata/sam/AlignmentSetImpl.hpp usr/include/pbseq/libblasr/pbdata/sam/CigarString.h usr/include/pbseq/libblasr/pbdata/sam/ReadGroup.hpp usr/include/pbseq/libblasr/pbdata/sam/ReferenceSequence.hpp usr/include/pbseq/libblasr/pbdata/sam/SAMAlignment.hpp usr/include/pbseq/libblasr/pbdata/sam/SAMFlag.h usr/include/pbseq/libblasr/pbdata/sam/SAMHeader.hpp usr/include/pbseq/libblasr/pbdata/sam/SAMKeywordValuePair.hpp usr/include/pbseq/libblasr/pbdata/sam/SAMKeywordValuePairImpl.hpp usr/include/pbseq/libblasr/pbdata/sam/SAMReader.hpp usr/include/pbseq/libblasr/pbdata/sam/SAMReaderImpl.hpp usr/include/pbseq/libblasr/pbdata/utils usr/include/pbseq/libblasr/pbdata/utils/BitUtils.hpp usr/include/pbseq/libblasr/pbdata/utils/SMRTReadUtils.hpp usr/include/pbseq/libblasr/pbdata/utils/SMRTTitle.hpp usr/include/pbseq/libblasr/pbdata/utils/TimeUtils.hpp usr/include/pbseq/libblasr/pbdata/utils.hpp usr/include/pbseq/libblasr/pbdata/utilsImpl.hpp usr/lib usr/lib/x86_64-linux-gnu usr/lib/x86_64-linux-gnu/libblasr.a usr/lib/x86_64-linux-gnu/pkgconfig usr/lib/x86_64-linux-gnu/pkgconfig/libblasr.pc usr/share usr/share/doc usr/share/doc/libblasr-dev usr/share/doc/libblasr-dev/copyright usr/lib/x86_64-linux-gnu/libblasr.so usr/share/doc/libblasr-dev/changelog.Debian.gz