libvcflib-tools (1.0.12+dfsg-2)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- libvcflib
- Architecture
- amd64
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 3.6 kB
- Size expected
- 644.1 kB
- Size actual
- 644.1 kB
- Size match
Dependencies
Required package dependencies
Description
C++ library for parsing and manipulating VCF files (tools)
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 40fd3563…e2c84083 | |
| SHA-1 | 1f270c4b…d9bf5f02 | |
| SHA-256 | d08fcf71…8ef2cea6 | |
| SHA-512 | 586b5c68…e31c261d |
Contents
Files and directories included
. usr usr/bin usr/bin/vcf2tsv usr/bin/vcffilter usr/bin/vcffixup usr/bin/vcfkeepinfo usr/bin/vcflib usr/bin/vcfuniqalleles usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/vcflib usr/lib/vcflib usr/lib/vcflib/bin usr/lib/vcflib/bin/abba-baba usr/lib/vcflib/bin/bFst usr/lib/vcflib/bin/bed2region usr/lib/vcflib/bin/bgziptabix usr/lib/vcflib/bin/dumpContigsFromHeader usr/lib/vcflib/bin/genotypeSummary usr/lib/vcflib/bin/hapLrt usr/lib/vcflib/bin/iHS usr/lib/vcflib/bin/meltEHH usr/lib/vcflib/bin/normalize-iHS usr/lib/vcflib/bin/pFst usr/lib/vcflib/bin/pVst usr/lib/vcflib/bin/permuteGPAT++ usr/lib/vcflib/bin/permuteSmooth usr/lib/vcflib/bin/plotHaps usr/lib/vcflib/bin/popStats usr/lib/vcflib/bin/segmentFst usr/lib/vcflib/bin/segmentIhs usr/lib/vcflib/bin/sequenceDiversity usr/lib/vcflib/bin/smoother usr/lib/vcflib/bin/vcf2bed.py usr/lib/vcflib/bin/vcf2dag usr/lib/vcflib/bin/vcf2fasta usr/lib/vcflib/bin/vcf2sqlite.py usr/lib/vcflib/bin/vcf2tsv usr/lib/vcflib/bin/vcf_strip_extra_headers usr/lib/vcflib/bin/vcfaddinfo usr/lib/vcflib/bin/vcfafpath usr/lib/vcflib/bin/vcfaltcount usr/lib/vcflib/bin/vcfannotate usr/lib/vcflib/bin/vcfannotategenotypes usr/lib/vcflib/bin/vcfbiallelic usr/lib/vcflib/bin/vcfbreakmulti usr/lib/vcflib/bin/vcfcat usr/lib/vcflib/bin/vcfcheck usr/lib/vcflib/bin/vcfclassify usr/lib/vcflib/bin/vcfclearid usr/lib/vcflib/bin/vcfclearinfo usr/lib/vcflib/bin/vcfcombine usr/lib/vcflib/bin/vcfcommonsamples usr/lib/vcflib/bin/vcfcomplex usr/lib/vcflib/bin/vcfcountalleles usr/lib/vcflib/bin/vcfcreatemulti usr/lib/vcflib/bin/vcfdistance usr/lib/vcflib/bin/vcfecho usr/lib/vcflib/bin/vcfentropy usr/lib/vcflib/bin/vcfevenregions usr/lib/vcflib/bin/vcffilter usr/lib/vcflib/bin/vcffirstheader usr/lib/vcflib/bin/vcffixup usr/lib/vcflib/bin/vcfflatten usr/lib/vcflib/bin/vcfgeno2alleles usr/lib/vcflib/bin/vcfgeno2haplo usr/lib/vcflib/bin/vcfgenosamplenames usr/lib/vcflib/bin/vcfgenosummarize usr/lib/vcflib/bin/vcfgenotypecompare usr/lib/vcflib/bin/vcfgenotypes usr/lib/vcflib/bin/vcfglbound usr/lib/vcflib/bin/vcfglxgt usr/lib/vcflib/bin/vcfgtcompare.sh usr/lib/vcflib/bin/vcfhetcount usr/lib/vcflib/bin/vcfhethomratio usr/lib/vcflib/bin/vcfindelproximity usr/lib/vcflib/bin/vcfindels usr/lib/vcflib/bin/vcfindex usr/lib/vcflib/bin/vcfinfo2qual usr/lib/vcflib/bin/vcfinfosummarize usr/lib/vcflib/bin/vcfintersect usr/lib/vcflib/bin/vcfjoincalls usr/lib/vcflib/bin/vcfkeepgeno usr/lib/vcflib/bin/vcfkeepinfo usr/lib/vcflib/bin/vcfkeepsamples usr/lib/vcflib/bin/vcfld usr/lib/vcflib/bin/vcfleftalign usr/lib/vcflib/bin/vcflength usr/lib/vcflib/bin/vcfmultiallelic usr/lib/vcflib/bin/vcfmultiway usr/lib/vcflib/bin/vcfmultiwayscripts usr/lib/vcflib/bin/vcfnobiallelicsnps usr/lib/vcflib/bin/vcfnoindels usr/lib/vcflib/bin/vcfnosnps usr/lib/vcflib/bin/vcfnulldotslashdot usr/lib/vcflib/bin/vcfnullgenofields usr/lib/vcflib/bin/vcfnumalt usr/lib/vcflib/bin/vcfoverlay usr/lib/vcflib/bin/vcfplotaltdiscrepancy.r usr/lib/vcflib/bin/vcfplotaltdiscrepancy.sh usr/lib/vcflib/bin/vcfplotsitediscrepancy.r usr/lib/vcflib/bin/vcfplottstv.sh usr/lib/vcflib/bin/vcfprimers usr/lib/vcflib/bin/vcfprintaltdiscrepancy.r usr/lib/vcflib/bin/vcfprintaltdiscrepancy.sh usr/lib/vcflib/bin/vcfqual2info usr/lib/vcflib/bin/vcfqualfilter usr/lib/vcflib/bin/vcfrandom usr/lib/vcflib/bin/vcfrandomsample usr/lib/vcflib/bin/vcfregionreduce usr/lib/vcflib/bin/vcfregionreduce_and_cut usr/lib/vcflib/bin/vcfregionreduce_pipe usr/lib/vcflib/bin/vcfregionreduce_uncompressed usr/lib/vcflib/bin/vcfremap usr/lib/vcflib/bin/vcfremoveaberrantgenotypes usr/lib/vcflib/bin/vcfremovenonATGC usr/lib/vcflib/bin/vcfremovesamples usr/lib/vcflib/bin/vcfsample2info usr/lib/vcflib/bin/vcfsamplediff usr/lib/vcflib/bin/vcfsamplenames usr/lib/vcflib/bin/vcfsitesummarize usr/lib/vcflib/bin/vcfsnps usr/lib/vcflib/bin/vcfsort usr/lib/vcflib/bin/vcfstreamsort usr/lib/vcflib/bin/vcfuniq usr/lib/vcflib/bin/vcfuniqalleles usr/lib/vcflib/bin/vcfvarstats usr/lib/vcflib/bin/wcFst usr/lib/vcflib/scripts usr/lib/vcflib/scripts/bed2region usr/lib/vcflib/scripts/bgziptabix usr/lib/vcflib/scripts/plotBfst.R usr/lib/vcflib/scripts/plotHapLrt.R usr/lib/vcflib/scripts/plotHaplotypes.R usr/lib/vcflib/scripts/plotPfst.R usr/lib/vcflib/scripts/plotSmoothed.R usr/lib/vcflib/scripts/plotWCfst.R usr/lib/vcflib/scripts/plotXPEHH.R usr/lib/vcflib/scripts/plot_roc.r usr/lib/vcflib/scripts/vcf2bed.py usr/lib/vcflib/scripts/vcf2sqlite.py usr/lib/vcflib/scripts/vcf_strip_extra_headers usr/lib/vcflib/scripts/vcfbiallelic usr/lib/vcflib/scripts/vcfclearid usr/lib/vcflib/scripts/vcfclearinfo usr/lib/vcflib/scripts/vcfcomplex usr/lib/vcflib/scripts/vcffirstheader usr/lib/vcflib/scripts/vcfgtcompare.sh usr/lib/vcflib/scripts/vcfindelproximity usr/lib/vcflib/scripts/vcfindels usr/lib/vcflib/scripts/vcfjoincalls usr/lib/vcflib/scripts/vcfmultiallelic usr/lib/vcflib/scripts/vcfmultiway usr/lib/vcflib/scripts/vcfmultiwayscripts usr/lib/vcflib/scripts/vcfnobiallelicsnps usr/lib/vcflib/scripts/vcfnoindels usr/lib/vcflib/scripts/vcfnosnps usr/lib/vcflib/scripts/vcfnulldotslashdot usr/lib/vcflib/scripts/vcfplotaltdiscrepancy.r usr/lib/vcflib/scripts/vcfplotaltdiscrepancy.sh usr/lib/vcflib/scripts/vcfplotsitediscrepancy.r usr/lib/vcflib/scripts/vcfplottstv.sh usr/lib/vcflib/scripts/vcfprintaltdiscrepancy.r usr/lib/vcflib/scripts/vcfprintaltdiscrepancy.sh usr/lib/vcflib/scripts/vcfqualfilter usr/lib/vcflib/scripts/vcfregionreduce usr/lib/vcflib/scripts/vcfregionreduce_and_cut usr/lib/vcflib/scripts/vcfregionreduce_pipe usr/lib/vcflib/scripts/vcfregionreduce_uncompressed usr/lib/vcflib/scripts/vcfremovenonATGC usr/lib/vcflib/scripts/vcfsnps usr/lib/vcflib/scripts/vcfsort usr/lib/vcflib/scripts/vcfvarstats usr/share usr/share/doc usr/share/doc/libvcflib-tools usr/share/doc/libvcflib-tools/copyright usr/share/lintian usr/share/lintian/overrides usr/share/lintian/overrides/libvcflib-tools usr/share/man usr/share/man/man1 usr/share/man/man1/abba-baba.1.gz usr/share/man/man1/bFst.1.gz usr/share/man/man1/dumpContigsFromHeader.1.gz usr/share/man/man1/genotypeSummary.1.gz usr/share/man/man1/hapLrt.1.gz usr/share/man/man1/iHS.1.gz usr/share/man/man1/meltEHH.1.gz usr/share/man/man1/normalize-iHS.1.gz usr/share/man/man1/pFst.1.gz usr/share/man/man1/pVst.1.gz usr/share/man/man1/permuteGPAT++.1.gz usr/share/man/man1/permuteSmooth.1.gz usr/share/man/man1/plotHaps.1.gz usr/share/man/man1/popStats.1.gz usr/share/man/man1/pyvcflib.1.gz usr/share/man/man1/segmentFst.1.gz usr/share/man/man1/segmentIhs.1.gz usr/share/man/man1/sequenceDiversity.1.gz usr/share/man/man1/smoother.1.gz usr/share/man/man1/vcf2dag.1.gz usr/share/man/man1/vcf2fasta.1.gz usr/share/man/man1/vcf2tsv.1.gz usr/share/man/man1/vcfaddinfo.1.gz usr/share/man/man1/vcfafpath.1.gz usr/share/man/man1/vcfallelicprimitives.1.gz usr/share/man/man1/vcfaltcount.1.gz usr/share/man/man1/vcfannotate.1.gz usr/share/man/man1/vcfannotategenotypes.1.gz usr/share/man/man1/vcfbreakmulti.1.gz usr/share/man/man1/vcfcat.1.gz usr/share/man/man1/vcfcheck.1.gz usr/share/man/man1/vcfclassify.1.gz usr/share/man/man1/vcfcleancomplex.1.gz usr/share/man/man1/vcfcombine.1.gz usr/share/man/man1/vcfcommonsamples.1.gz usr/share/man/man1/vcfcountalleles.1.gz usr/share/man/man1/vcfcreatemulti.1.gz usr/share/man/man1/vcfdistance.1.gz usr/share/man/man1/vcfecho.1.gz usr/share/man/man1/vcfentropy.1.gz usr/share/man/man1/vcfevenregions.1.gz usr/share/man/man1/vcffilter.1.gz usr/share/man/man1/vcffixup.1.gz usr/share/man/man1/vcfflatten.1.gz usr/share/man/man1/vcfgeno2alleles.1.gz usr/share/man/man1/vcfgeno2haplo.1.gz usr/share/man/man1/vcfgenosamplenames.1.gz usr/share/man/man1/vcfgenosummarize.1.gz usr/share/man/man1/vcfgenotypecompare.1.gz usr/share/man/man1/vcfgenotypes.1.gz usr/share/man/man1/vcfglbound.1.gz usr/share/man/man1/vcfglxgt.1.gz usr/share/man/man1/vcfhetcount.1.gz usr/share/man/man1/vcfhethomratio.1.gz usr/share/man/man1/vcfindex.1.gz usr/share/man/man1/vcfinfo2qual.1.gz usr/share/man/man1/vcfinfosummarize.1.gz usr/share/man/man1/vcfintersect.1.gz usr/share/man/man1/vcfkeepgeno.1.gz usr/share/man/man1/vcfkeepinfo.1.gz usr/share/man/man1/vcfkeepsamples.1.gz usr/share/man/man1/vcfld.1.gz usr/share/man/man1/vcfleftalign.1.gz usr/share/man/man1/vcflength.1.gz usr/share/man/man1/vcflib-api.1.gz usr/share/man/man1/vcflib.1.gz usr/share/man/man1/vcfnulldotslashdot.1.gz usr/share/man/man1/vcfnullgenofields.1.gz usr/share/man/man1/vcfnumalt.1.gz usr/share/man/man1/vcfoverlay.1.gz usr/share/man/man1/vcfparsealts.1.gz usr/share/man/man1/vcfprimers.1.gz usr/share/man/man1/vcfqual2info.1.gz usr/share/man/man1/vcfrandom.1.gz usr/share/man/man1/vcfrandomsample.1.gz usr/share/man/man1/vcfremap.1.gz usr/share/man/man1/vcfremoveaberrantgenotypes.1.gz usr/share/man/man1/vcfremovesamples.1.gz usr/share/man/man1/vcfroc.1.gz usr/share/man/man1/vcfsample2info.1.gz usr/share/man/man1/vcfsamplediff.1.gz usr/share/man/man1/vcfsamplenames.1.gz usr/share/man/man1/vcfsitesummarize.1.gz usr/share/man/man1/vcfstats.1.gz usr/share/man/man1/vcfstreamsort.1.gz usr/share/man/man1/vcfuniq.1.gz usr/share/man/man1/vcfuniqalleles.1.gz usr/share/man/man1/vcfwave.1.gz usr/share/man/man1/wcFst.1.gz usr/bin/vcfstreamsort usr/bin/vcfuniq usr/lib/R/site-library/vcflib/plotBfst.R usr/lib/R/site-library/vcflib/plotHapLrt.R usr/lib/R/site-library/vcflib/plotHaplotypes.R usr/lib/R/site-library/vcflib/plotPfst.R usr/lib/R/site-library/vcflib/plotSmoothed.R usr/lib/R/site-library/vcflib/plotWCfst.R usr/lib/R/site-library/vcflib/plotXPEHH.R usr/share/doc/libvcflib-tools/changelog.Debian.gz