mapdamage (2.2.3+dfsg-2ubuntu1)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- none
- Architecture
- amd64
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 226 B
- Size expected
- 51.2 kB
- Size actual
- 51.2 kB
- Size match
Dependencies
Required package dependencies
- python3 (<< 3.15)
- python3 (>= 3.14~)
- python3-pysam
- python3:any
- libc6 (>= 2.14)
- zlib1g (>= 1:1.2.3.4)
- r-base-core
- r-cran-gam
- r-cran-ggplot2
- r-cran-inline
- seqtk
- r-cran-rcpp
- r-cran-rcppgsl
- libopenblas-dev | libblas-dev | libatlas-base-dev | libblas.so
- libopenblas-dev | liblapack-dev | libatlas-base-dev | liblapack.so
Suggested packages
Recommended additional packages
- None
Description
tracking and quantifying damage patterns in ancient DNA sequences
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 7bf267c2…e39207de | |
| SHA-1 | a4728fd0…89c4da5b | |
| SHA-256 | 947d4f54…2f7b8e38 | |
| SHA-512 | 5a6d89a6…6ac6c47b |
Contents
Files and directories included
. usr usr/bin usr/bin/mapDamage usr/lib usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/mapdamage usr/lib/python3/dist-packages/mapdamage/Rscripts usr/lib/python3/dist-packages/mapdamage/Rscripts/lengths.R usr/lib/python3/dist-packages/mapdamage/Rscripts/mapDamage.R usr/lib/python3/dist-packages/mapdamage/Rscripts/stats usr/lib/python3/dist-packages/mapdamage/Rscripts/stats/checkLibraries.R usr/lib/python3/dist-packages/mapdamage/Rscripts/stats/data.R usr/lib/python3/dist-packages/mapdamage/Rscripts/stats/function.R usr/lib/python3/dist-packages/mapdamage/Rscripts/stats/main.R usr/lib/python3/dist-packages/mapdamage/Rscripts/stats/postConditonal.R usr/lib/python3/dist-packages/mapdamage/Rscripts/stats/priorPropose.R usr/lib/python3/dist-packages/mapdamage/Rscripts/stats/runGeneral.R usr/lib/python3/dist-packages/mapdamage/Rscripts/stats/start.R usr/lib/python3/dist-packages/mapdamage/__init__.py usr/lib/python3/dist-packages/mapdamage/__main__.py usr/lib/python3/dist-packages/mapdamage/align.py usr/lib/python3/dist-packages/mapdamage/composition.py usr/lib/python3/dist-packages/mapdamage/main.py usr/lib/python3/dist-packages/mapdamage/mp_test.py usr/lib/python3/dist-packages/mapdamage/parseoptions.py usr/lib/python3/dist-packages/mapdamage/rescale.py usr/lib/python3/dist-packages/mapdamage/rscript.py usr/lib/python3/dist-packages/mapdamage/seq.py usr/lib/python3/dist-packages/mapdamage/seqtk usr/lib/python3/dist-packages/mapdamage/seqtk/README.md usr/lib/python3/dist-packages/mapdamage/seqtk/kseq.h usr/lib/python3/dist-packages/mapdamage/seqtk/seqtk.c usr/lib/python3/dist-packages/mapdamage/seqtk.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/mapdamage/tables.py usr/lib/python3/dist-packages/mapdamage/tests usr/lib/python3/dist-packages/mapdamage/tests/dnacomp.txt usr/lib/python3/dist-packages/mapdamage/tests/fake1.fasta usr/lib/python3/dist-packages/mapdamage/tests/probs usr/lib/python3/dist-packages/mapdamage/tests/probs/Stats_out_MCMC_correct_prob.csv usr/lib/python3/dist-packages/mapdamage/tests/test.bam usr/lib/python3/dist-packages/mapdamage/tests/test.rescaled.correct.sam usr/lib/python3/dist-packages/mapdamage/version.py usr/lib/python3/dist-packages/mapdamage-2.2.3.dist-info usr/lib/python3/dist-packages/mapdamage-2.2.3.dist-info/INSTALLER usr/lib/python3/dist-packages/mapdamage-2.2.3.dist-info/METADATA usr/lib/python3/dist-packages/mapdamage-2.2.3.dist-info/WHEEL usr/lib/python3/dist-packages/mapdamage-2.2.3.dist-info/entry_points.txt usr/lib/python3/dist-packages/mapdamage-2.2.3.dist-info/top_level.txt usr/share usr/share/doc usr/share/doc/mapdamage usr/share/doc/mapdamage/README.test usr/share/doc/mapdamage/changelog.Debian.gz usr/share/doc/mapdamage/copyright usr/share/doc/mapdamage/run-r-packages-check usr/share/doc/mapdamage/run-unit-test usr/share/man usr/share/man/man1 usr/share/man/man1/mapDamage.1.gz