optimir (1.2-2build1)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- none
- Architecture
- amd64
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 7.4 kB
- Size expected
- 1.1 MB
- Size actual
- 1.1 MB
- Size match
Dependencies
Required package dependencies
Suggested packages
Recommended additional packages
- None
Description
Integrating genetic variations in miRNA alignment
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 0e8c7d36…c8d3835c | |
| SHA-1 | 767815f8…f07759b4 | |
| SHA-256 | 1232323c…9650a4fc | |
| SHA-512 | c0f5473b…25d6d50e |
Contents
Files and directories included
. usr usr/bin usr/bin/optimir usr/lib usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/OptimiR-1.0.egg-info usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/PKG-INFO usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/dependency_links.txt usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/entry_points.txt usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/requires.txt usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/top_level.txt usr/lib/python3/dist-packages/optimir usr/lib/python3/dist-packages/optimir/__init__.py usr/lib/python3/dist-packages/optimir/command_line.py usr/lib/python3/dist-packages/optimir/libs usr/lib/python3/dist-packages/optimir/libs/__init__.py usr/lib/python3/dist-packages/optimir/libs/annotate.py usr/lib/python3/dist-packages/optimir/libs/consistency.py usr/lib/python3/dist-packages/optimir/libs/essentials.py usr/lib/python3/dist-packages/optimir/libs/filter_reads.py usr/lib/python3/dist-packages/optimir/libs/get_counts.py usr/lib/python3/dist-packages/optimir/libs/library_preparation.py usr/lib/python3/dist-packages/optimir/libs/mapping.py usr/lib/python3/dist-packages/optimir/libs/post_process.py usr/lib/python3/dist-packages/optimir/libs/pre_process.py usr/lib/python3/dist-packages/optimir/libs/process.py usr/lib/python3/dist-packages/optimir/libs/read_collapser.py usr/lib/python3/dist-packages/optimir/libs/scoring.py usr/lib/python3/dist-packages/optimir/libs/summarize.py usr/lib/python3/dist-packages/optimir/resources usr/lib/python3/dist-packages/optimir/resources/coordinates usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v21.gff3 usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v22.gff3 usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3 usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3 usr/lib/python3/dist-packages/optimir/resources/fasta usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_hairpins_miRCarta_v1.1.fa usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_matures_miRBase_v21.fa usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_matures_miRBase_v22.fa usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_matures_miRCarta_v1.1.fa usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa usr/share usr/share/doc usr/share/doc/optimir usr/share/doc/optimir/README.md.gz usr/share/doc/optimir/README.test usr/share/doc/optimir/changelog.Debian.gz usr/share/doc/optimir/copyright usr/share/doc/optimir/examples usr/share/doc/optimir/examples/Results_example_all usr/share/doc/optimir/examples/Results_example_all/consistency_table.annot usr/share/doc/optimir/examples/Results_example_all/isomiRs_dist.annot usr/share/doc/optimir/examples/Results_example_all/isomiRs_specific_abundances.txt usr/share/doc/optimir/examples/Results_example_all/miRs_and_polymiRs_abundances.txt usr/share/doc/optimir/examples/Results_example_all/miRs_merged_abundances.txt usr/share/doc/optimir/examples/Results_example_all/polymiRs_specific_abundances.txt usr/share/doc/optimir/examples/Results_example_all/polymiRs_table.annot usr/share/doc/optimir/examples/S1.fq.gz usr/share/doc/optimir/examples/S2.fq.gz usr/share/doc/optimir/examples/example_1.sh usr/share/doc/optimir/examples/example_all.sh usr/share/doc/optimir/examples/genotypes.vcf usr/share/doc/optimir/examples/plot_ASE.R usr/share/doc/optimir/examples/plot_isoDist.R usr/share/doc/optimir/run-unit-test usr/share/man usr/share/man/man1 usr/share/man/man1/optimir.1.gz