parsnp (2.1.3+dfsg-1build1)

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-stonking
Repository
https://nl.archive.ubuntu.com/ubuntu
Codename
stonking
Component
universe
Source
none
Architecture
amd64
Section
universe/science
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
1.9 kB
Size expected
205.2 kB
Size actual
205.2 kB
Size match

Dependencies

Required package dependencies

  • libc6 (>= 2.38)
  • libgcc-s1 (>= 3.3.1)
  • libgomp1 (>= 6)
  • libmuscle1 (>= 3.7+4565)
  • libstdc++6 (>= 14)
  • python3:any
  • python3-biopython
  • python3-numpy
  • python3-pyspoa
  • python3-tqdm
  • fasttree
  • harvest-tools
  • mummer
  • phipack
  • python3
  • raxml
  • time

Suggested packages

Recommended additional packages

  • None

Description

rapid core genome multi-alignment

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD5162b10a9…67bc529d
SHA-16c1ea5a8…784a8494
SHA-2567cf02c28…a5a9cf71
SHA-5120abf657e…c92f50d8

Contents

Files and directories included

.
usr
usr/bin
usr/bin/parsnp
usr/lib
usr/lib/parsnp
usr/lib/parsnp/parsnp_core
usr/lib/python3
usr/lib/python3/dist-packages
usr/lib/python3/dist-packages/parsnp
usr/lib/python3/dist-packages/parsnp/extend.py
usr/lib/python3/dist-packages/parsnp/logger.py
usr/lib/python3/dist-packages/parsnp/partition.py
usr/share
usr/share/doc
usr/share/doc/parsnp
usr/share/doc/parsnp/NEWS.gz
usr/share/doc/parsnp/README.md.gz
usr/share/doc/parsnp/README.test
usr/share/doc/parsnp/changelog.Debian.gz
usr/share/doc/parsnp/copyright
usr/share/doc/parsnp/examples
usr/share/doc/parsnp/examples/mers_virus
usr/share/doc/parsnp/examples/mers_virus/genomes
usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_12_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_15_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_16_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_17_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_18_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_19_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_1_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_21_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_25_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_2_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_3_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_4_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Bisha_1_2012.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Buraidah_1_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/EMC_2012.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/England-Qatar_2012.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/England1.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/FRA-UAE.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_1_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_2_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al_Batin_6_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Indiana-USA-1_Saudi_Arabia_2014.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_1_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Jordan-N3_2012.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/KF192507.1.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_1.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_13.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_19Dam.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/KJ477102.1.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-363.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-376.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-378.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-503.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-505.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/NC_019843.2.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar3.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar4.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_14_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_1_2012.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_2_2012.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_3_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_4_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_5_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_9_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Taif_1_2013.fna
usr/share/doc/parsnp/examples/mers_virus/genomes/Wadi-Ad-Dawasir_1_2013.fna
usr/share/doc/parsnp/examples/mers_virus/ref
usr/share/doc/parsnp/examples/mers_virus/ref/England1.fna
usr/share/doc/parsnp/examples/mers_virus/ref/England1.gbk
usr/share/doc/parsnp/run-unit-test
usr/share/man
usr/share/man/man1
usr/share/man/man1/parsnp.1.gz
usr/share/parsnp
usr/share/parsnp/template.ini