python3-pairtools (1.1.3-2build1)

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-stonking
Repository
https://nl.archive.ubuntu.com/ubuntu
Codename
stonking
Component
universe
Source
pairtools
Architecture
amd64
Section
universe/python
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
823 B
Size expected
204.4 kB
Size actual
204.4 kB
Size match

Dependencies

Required package dependencies

  • python3-standard-pipes
  • python3 (<< 3.15)
  • python3 (>= 3.14~)
  • python3-bioframe
  • python3-click
  • python3-numpy
  • python3-numpy2-abi0 | python3-numpy-abi9
  • python3-pandas
  • python3-pysam (>= 0.20.0+ds-3~)
  • python3-scipy
  • python3-yaml
  • python3:any
  • libc6 (>= 2.14)
  • libgcc-s1 (>= 3.0)
  • libstdc++6 (>= 5.2)

Suggested packages

Recommended additional packages

  • python3-pairtools-examples (>= 1.0.2)

Description

Framework to process sequencing data from a Hi-C experiment

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD50d36deb0…5692af34
SHA-1d5723137…e74b963f
SHA-256ad7d182b…d665b7c6
SHA-5127363b83e…d58a6a22

Contents

Files and directories included

.
usr
usr/bin
usr/bin/pairtools
usr/lib
usr/lib/python3
usr/lib/python3/dist-packages
usr/lib/python3/dist-packages/pairtools
usr/lib/python3/dist-packages/pairtools/__init__.py
usr/lib/python3/dist-packages/pairtools/__main__.py
usr/lib/python3/dist-packages/pairtools/_logging.py
usr/lib/python3/dist-packages/pairtools/cli
usr/lib/python3/dist-packages/pairtools/cli/__init__.py
usr/lib/python3/dist-packages/pairtools/cli/dedup.py
usr/lib/python3/dist-packages/pairtools/cli/filterbycov.py
usr/lib/python3/dist-packages/pairtools/cli/flip.py
usr/lib/python3/dist-packages/pairtools/cli/header.py
usr/lib/python3/dist-packages/pairtools/cli/markasdup.py
usr/lib/python3/dist-packages/pairtools/cli/merge.py
usr/lib/python3/dist-packages/pairtools/cli/parse.py
usr/lib/python3/dist-packages/pairtools/cli/parse2.py
usr/lib/python3/dist-packages/pairtools/cli/phase.py
usr/lib/python3/dist-packages/pairtools/cli/restrict.py
usr/lib/python3/dist-packages/pairtools/cli/sample.py
usr/lib/python3/dist-packages/pairtools/cli/scaling.py
usr/lib/python3/dist-packages/pairtools/cli/select.py
usr/lib/python3/dist-packages/pairtools/cli/sort.py
usr/lib/python3/dist-packages/pairtools/cli/split.py
usr/lib/python3/dist-packages/pairtools/cli/stats.py
usr/lib/python3/dist-packages/pairtools/lib
usr/lib/python3/dist-packages/pairtools/lib/__init__.py
usr/lib/python3/dist-packages/pairtools/lib/dedup.py
usr/lib/python3/dist-packages/pairtools/lib/dedup_cython.cpython-314-x86_64-linux-gnu.so
usr/lib/python3/dist-packages/pairtools/lib/dedup_cython.pyx
usr/lib/python3/dist-packages/pairtools/lib/fileio.py
usr/lib/python3/dist-packages/pairtools/lib/filterbycov.py
usr/lib/python3/dist-packages/pairtools/lib/headerops.py
usr/lib/python3/dist-packages/pairtools/lib/pairsam_format.py
usr/lib/python3/dist-packages/pairtools/lib/pairsio.py
usr/lib/python3/dist-packages/pairtools/lib/parse.py
usr/lib/python3/dist-packages/pairtools/lib/parse_pysam.cpython-314-x86_64-linux-gnu.so
usr/lib/python3/dist-packages/pairtools/lib/parse_pysam.pxd
usr/lib/python3/dist-packages/pairtools/lib/parse_pysam.pyx
usr/lib/python3/dist-packages/pairtools/lib/phase.py
usr/lib/python3/dist-packages/pairtools/lib/regions.cpython-314-x86_64-linux-gnu.so
usr/lib/python3/dist-packages/pairtools/lib/regions.pyx
usr/lib/python3/dist-packages/pairtools/lib/restrict.py
usr/lib/python3/dist-packages/pairtools/lib/scaling.py
usr/lib/python3/dist-packages/pairtools/lib/select.py
usr/lib/python3/dist-packages/pairtools/lib/stats.py
usr/lib/python3/dist-packages/pairtools-1.1.3.dist-info
usr/lib/python3/dist-packages/pairtools-1.1.3.dist-info/INSTALLER
usr/lib/python3/dist-packages/pairtools-1.1.3.dist-info/METADATA
usr/lib/python3/dist-packages/pairtools-1.1.3.dist-info/WHEEL
usr/lib/python3/dist-packages/pairtools-1.1.3.dist-info/entry_points.txt
usr/lib/python3/dist-packages/pairtools-1.1.3.dist-info/top_level.txt
usr/share
usr/share/doc
usr/share/doc/python3-pairtools
usr/share/doc/python3-pairtools/README.test
usr/share/doc/python3-pairtools/changelog.Debian.gz
usr/share/doc/python3-pairtools/copyright