seqsero (1.0.1+dfsg-6build1)

Details

Core information at a glance

Distribution: ubuntu
Origin: ubuntu-stonking
Repository: https://nl.archive.ubuntu.com/ubuntu
Codename: stonking
Component: universe
Source: none
Architecture: amd64
Section: universe/science
Priority: optional
Maintainer: Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size: 3.5 kB
Size expected: 368.8 kB
Size actual: 368.8 kB
Size match

Dependencies

Required package dependencies

python3:any
python3-biopython
bwa
samtools
sra-toolkit

Suggested packages

Recommended additional packages

ispcr

Description

Salmonella serotyping from genome sequencing data

Homepage Download .deb

Checksums

Hash values and integrity verification status

Type	Expected	Actual
MD5	c21564e5…53a162a8	c21564e5…53a162a8
SHA-1	17aec9b5…3ea5fa9c	17aec9b5…3ea5fa9c
SHA-256	2763270e…79ccabbb	2763270e…79ccabbb
SHA-512	4b32afe1…764261bd	4b32afe1…764261bd

Files and directories included

.
usr
usr/bin
usr/bin/seqsero_batch_pair-end
usr/share
usr/share/doc
usr/share/doc/seqsero
usr/share/doc/seqsero/README.Debian
usr/share/doc/seqsero/README.md
usr/share/doc/seqsero/README.test
usr/share/doc/seqsero/User_manual.pdf
usr/share/doc/seqsero/changelog.Debian.gz
usr/share/doc/seqsero/copyright
usr/share/doc/seqsero/examples
usr/share/doc/seqsero/examples/single_read.fasta
usr/share/doc/seqsero/examples/sra_data.fastq
usr/share/doc/seqsero/run-unit-test
usr/share/doc-base
usr/share/doc-base/seqsero.seqsero
usr/share/man
usr/share/man/man1
usr/share/man/man1/seqsero.1.gz
usr/share/man/man1/seqsero_batch_pair-end.1.gz
usr/share/python3
usr/share/python3/runtime.d
usr/share/python3/runtime.d/seqsero.rtupdate
usr/share/seqsero
usr/share/seqsero/SeqSero.py
usr/share/seqsero/database
usr/share/seqsero/database/FliC_Family_b,d,j_special_genes.fasta
usr/share/seqsero/database/FliC_Family_fg_special.fasta
usr/share/seqsero/database/FliC_Family_g_special_genes.fasta
usr/share/seqsero/database/FliC_Family_k,z_special_genes.fasta
usr/share/seqsero/database/FliC_Family_k_z58_special_genes.fasta
usr/share/seqsero/database/FliC_Family_l,v_special_genes.fasta
usr/share/seqsero/database/FliC_Family_r,i_special_genes_short.fasta
usr/share/seqsero/database/FliC_Family_z36z38_special_genes.fasta
usr/share/seqsero/database/FliC_Family_z44_k_special_genes.fasta
usr/share/seqsero/database/FliC_Family_z4z23_special_genes.fasta
usr/share/seqsero/database/FliC_f_g_s_whole.fasta
usr/share/seqsero/database/FljB_1_2_7_whole.fasta
usr/share/seqsero/database/FljB_1_2_7_whole.fasta.amb
usr/share/seqsero/database/FljB_1_2_7_whole.fasta.ann
usr/share/seqsero/database/FljB_1_2_7_whole.fasta.bwt
usr/share/seqsero/database/FljB_1_2_7_whole.fasta.pac
usr/share/seqsero/database/FljB_1_2_7_whole.fasta.sa
usr/share/seqsero/database/FljB_Family_1_special_genes_all.fasta
usr/share/seqsero/database/FljB_Family_e_special_genes.fasta
usr/share/seqsero/database/FljB_Family_k,z_special_genes.fasta
usr/share/seqsero/database/FljB_Family_l,v_special_genes.fasta
usr/share/seqsero/database/FljB_Family_l,w_special_genes.fasta
usr/share/seqsero/database/FljB_Family_z_special_genes.fasta
usr/share/seqsero/database/FljB_l,z13,z28_whole.fasta
usr/share/seqsero/database/FljB_z6_whole.fasta
usr/share/seqsero/database/H_combine_update_9_03_2014_new.fasta
usr/share/seqsero/database/H_new_fliC_protein_database.fasta
usr/share/seqsero/database/H_new_fljB_protein_database.fasta
usr/share/seqsero/database/H_newest_database.fasta
usr/share/seqsero/database/O_3,10_and_1,3,19_spe.fasta
usr/share/seqsero/database/O_4_wzy_but_not_in_rfb.fasta
usr/share/seqsero/database/ParaA_rfb.fasta
usr/share/seqsero/database/ParaA_rfb.fasta.amb
usr/share/seqsero/database/ParaA_rfb.fasta.ann
usr/share/seqsero/database/ParaA_rfb.fasta.bwt
usr/share/seqsero/database/ParaA_rfb.fasta.pac
usr/share/seqsero/database/ParaA_rfb.fasta.sa
usr/share/seqsero/database/Typhimurium_LT2_gnd_galF.fasta
usr/share/seqsero/database/complete_oafA.fasta
usr/share/seqsero/database/fliC_b_whole.fasta
usr/share/seqsero/database/fliC_k,z_whole.fasta
usr/share/seqsero/database/fliC_l_z13_whole.fasta
usr/share/seqsero/database/fliC_r_whole.fasta
usr/share/seqsero/database/fliC_r_whole.fasta.amb
usr/share/seqsero/database/fliC_r_whole.fasta.ann
usr/share/seqsero/database/fliC_r_whole.fasta.bwt
usr/share/seqsero/database/fliC_r_whole.fasta.pac
usr/share/seqsero/database/fliC_r_whole.fasta.sa
usr/share/seqsero/database/fliC_z36,z38_whole.fasta
usr/share/seqsero/database/fliC_z4,z23_family.fasta
usr/share/seqsero/database/fliC_z4z23_whole.fasta
usr/share/seqsero/database/fliC_z58_k_special_sequences.fasta
usr/share/seqsero/database/fljB_e,n,z15_whole.fasta
usr/share/seqsero/database/new_Oserotype.fasta
usr/share/seqsero/database/oafA_of_O4_O5.fasta
usr/share/seqsero/database/special_O_genes.fasta
usr/share/seqsero/database/special_new_O_genes.fasta
usr/share/seqsero/database/specific_genes.fasta
usr/share/seqsero/database/tyr_of_O2_O9.fasta
usr/share/seqsero/libs
usr/share/seqsero/libs/BWA_analysis_H_update_new_family_dependent.py
usr/share/seqsero/libs/BWA_analysis_O_new_dependent.py
usr/share/seqsero/libs/H_combination_output_analysis.py
usr/share/seqsero/libs/Initial_Conditions.py
usr/share/seqsero/libs/Initial_functions.py
usr/share/seqsero/libs/Otype_determine_analysis.py
usr/share/seqsero/libs/compare_and_change_two_fastq_id.py
usr/share/seqsero/libs/deletion_compare.py
usr/share/seqsero/libs/run_auto_All_for_assemblies.py
usr/share/seqsero/libs/run_auto_All_for_web_multi_revise.py
usr/share/seqsero/libs/special_gene_test_assemblies.py
usr/share/seqsero/libs/splitPairedEndReads.pl
usr/share/seqsero/libs/split_interleaved_fastq.pl
usr/share/seqsero/primers
usr/share/seqsero/primers/seq_primer_fliC.txt
usr/share/seqsero/primers/seq_primer_fljB.txt
usr/bin/seqsero