shasta (0.14.0-1ubuntu2)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- none
- Architecture
- amd64
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 2.7 kB
- Size expected
- 670.3 kB
- Size actual
- 670.3 kB
- Size match
Dependencies
Required package dependencies
Suggested packages
Recommended additional packages
- None
Description
nanopore whole genome assembly (binaries and scripts)
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 37da800d…a014afe1 | |
| SHA-1 | 32c6847e…c911a4cb | |
| SHA-256 | b0a63155…6c4c4572 | |
| SHA-512 | ff47f56e…eb077f44 |
Contents
Files and directories included
. usr usr/bin usr/bin/shasta usr/share usr/share/doc usr/share/doc/shasta usr/share/doc/shasta/AlignOrientedReads.py usr/share/doc/shasta/AlignOrientedReads1.py usr/share/doc/shasta/AlignOrientedReads4.py usr/share/doc/shasta/AnalyzeAlignmentMatrix.py usr/share/doc/shasta/AnalyzeAssemblyGraphBubbles.py usr/share/doc/shasta/AnalyzeReadGraph.py usr/share/doc/shasta/Assemble.py usr/share/doc/shasta/AssembleMarkerGraphEdges.py usr/share/doc/shasta/AssembleMarkerGraphVertices.py usr/share/doc/shasta/AssembleSegment.py usr/share/doc/shasta/CheckConfigurations.py usr/share/doc/shasta/CheckMarkerGraphIsStrandSymmetric.py usr/share/doc/shasta/CleanupDuplicateMarkers.py usr/share/doc/shasta/CleanupRunDirectory.py usr/share/doc/shasta/ClusterMarkerGraphEdgeOrientedReads.py usr/share/doc/shasta/ColorGfaBySimilarityToSegment.py usr/share/doc/shasta/ColorGfaKeySegments.py usr/share/doc/shasta/ColorGfaWithTwoReads.py usr/share/doc/shasta/ComputeAlignments.py usr/share/doc/shasta/ComputeAssemblyStatistics.py usr/share/doc/shasta/ComputeMarkerGraphCoverageHistogram.py usr/share/doc/shasta/ComputeMarkerGraphVerticesCoverageData.py usr/share/doc/shasta/ComputeReadGraphConnectedComponents.py usr/share/doc/shasta/ComputeSortedMarkers.py usr/share/doc/shasta/Copy.py usr/share/doc/shasta/CopyDirectory.py usr/share/doc/shasta/CountKmers.py usr/share/doc/shasta/CreateAndCleanupMarkerGraph.py usr/share/doc/shasta/CreateAssembly.py usr/share/doc/shasta/CreateAssemblyGraphEdges.py usr/share/doc/shasta/CreateAssemblyGraphVertices.py usr/share/doc/shasta/CreateCompressedAssemblyGraph.py usr/share/doc/shasta/CreateConfigurationTable.py usr/share/doc/shasta/CreateLocalSubgraph.py usr/share/doc/shasta/CreateMarkerGraphAndTransitiveReduction.py usr/share/doc/shasta/CreateMarkerGraphEdges.py usr/share/doc/shasta/CreateMarkerGraphEdgesStrict.py usr/share/doc/shasta/CreateMarkerGraphSecondaryEdges.py usr/share/doc/shasta/CreateMarkerGraphVertices.py usr/share/doc/shasta/CreateModules.py usr/share/doc/shasta/CreatePrimaryMarkerGraphEdges.py usr/share/doc/shasta/CreateReadGraph.py usr/share/doc/shasta/CreateReadGraph2.py usr/share/doc/shasta/CreateReadGraph3.py usr/share/doc/shasta/CreateReadGraph4.py usr/share/doc/shasta/CreateReadGraphMode1.py usr/share/doc/shasta/CreateReadGraphUsingPseudoPaths.py usr/share/doc/shasta/Detangle.py usr/share/doc/shasta/Detangle2.py usr/share/doc/shasta/FastqGzToFasta.py usr/share/doc/shasta/FastqToFasta.py usr/share/doc/shasta/FastqToFastaAll.py usr/share/doc/shasta/FindAlignmentCandidatesLowHash0.py usr/share/doc/shasta/FindAssemblyGraphBubbles.py usr/share/doc/shasta/FindMarkerGraphReverseComplementEdges.py usr/share/doc/shasta/FindMarkerGraphReverseComplementVertices.py usr/share/doc/shasta/FindMarkers.py usr/share/doc/shasta/FlagChimericReads.py usr/share/doc/shasta/FlagCrossStrandReadGraphEdges.py usr/share/doc/shasta/FlagInconsistentAlignments.py usr/share/doc/shasta/FlagPalindromicReads.py usr/share/doc/shasta/FlagPrimaryMarkerGraphEdges.py usr/share/doc/shasta/GenerateConfig.py.gz usr/share/doc/shasta/GenerateFeedback.py.gz usr/share/doc/shasta/GenerateRandomHaplotypes.py usr/share/doc/shasta/GetConfig.py usr/share/doc/shasta/GetReadId.py usr/share/doc/shasta/HistogramReadLength.py usr/share/doc/shasta/InstallPrerequisites-Ubuntu-Old.sh usr/share/doc/shasta/InstallPrerequisites-Ubuntu.py.gz usr/share/doc/shasta/InstallPrerequisites-Ubuntu.sh usr/share/doc/shasta/Mode2Assembly-A.py.gz usr/share/doc/shasta/Mode2Assembly-B-Prepare.py usr/share/doc/shasta/Mode2Assembly-B.py usr/share/doc/shasta/Mode3Assembly.py usr/share/doc/shasta/PruneMarkerGraphStrongSubgraph.py usr/share/doc/shasta/ReadGraphClustering.py usr/share/doc/shasta/RemoveReadGraphBridges.py usr/share/doc/shasta/RestoreRun.py usr/share/doc/shasta/RunAssemblies.py usr/share/doc/shasta/SaveRun.py usr/share/doc/shasta/SetMarkerGraphEdgeFlags.py usr/share/doc/shasta/SetupRunDirectory.py usr/share/doc/shasta/SetupSmallRunDirectory.py usr/share/doc/shasta/SimpleBayesianConsensusCallerCreateBuiltin.py usr/share/doc/shasta/SimplifyMarkerGraph.py usr/share/doc/shasta/SplitMarkerGraphSecondaryEdges.py usr/share/doc/shasta/StepSequence1.py usr/share/doc/shasta/SummarizeAssemblies.py usr/share/doc/shasta/Test.py usr/share/doc/shasta/TestSimpleBayesianConsensusCaller.py usr/share/doc/shasta/TransitiveReduction.py usr/share/doc/shasta/TravisCheckBuildMacOS.sh usr/share/doc/shasta/TravisCheckBuildUbuntu.sh usr/share/doc/shasta/WriteAlignmentCandidates.py usr/share/doc/shasta/WriteAssemblyGraph.py usr/share/doc/shasta/WriteBadMarkerGraphVertices.py usr/share/doc/shasta/WriteFasta.py usr/share/doc/shasta/WriteGfa.py usr/share/doc/shasta/WriteGfaBothStrands.py usr/share/doc/shasta/WriteLocalAlignmentCandidateReads.py usr/share/doc/shasta/WriteLocalReadGraphReads.py usr/share/doc/shasta/WriteMarkers.py usr/share/doc/shasta/WriteOrientedRead.py usr/share/doc/shasta/WriteOrientedReadPath.py usr/share/doc/shasta/WriteOrientedReadsBySegment.py usr/share/doc/shasta/WriteParallelMarkerGraphEdges.py usr/share/doc/shasta/WritePseudoPath.py usr/share/doc/shasta/WriteRead.py usr/share/doc/shasta/WriteReadGraphEdges.py usr/share/doc/shasta/WriteReads.py usr/share/doc/shasta/comparePhaseAssignments.py.gz usr/share/doc/shasta/copyright usr/share/doc/shasta/dset64Test.py usr/share/doc/shasta/examples usr/share/doc/shasta/examples/TinyTest.fasta.gz usr/share/doc/shasta/examples/conf usr/share/doc/shasta/examples/conf/HiFi-Oct2021.conf usr/share/doc/shasta/examples/conf/Nanopore-Dec2019.conf usr/share/doc/shasta/examples/conf/Nanopore-Human-SingleFlowcell-May2022.conf usr/share/doc/shasta/examples/conf/Nanopore-Human-SingleFlowcell-Phased-May2022.conf usr/share/doc/shasta/examples/conf/Nanopore-Jun2020.conf usr/share/doc/shasta/examples/conf/Nanopore-May2022.conf usr/share/doc/shasta/examples/conf/Nanopore-Oct2021.conf usr/share/doc/shasta/examples/conf/Nanopore-OldGuppy-Sep2020.conf usr/share/doc/shasta/examples/conf/Nanopore-Phased-Aug2021.conf usr/share/doc/shasta/examples/conf/Nanopore-Phased-Jan2022.conf usr/share/doc/shasta/examples/conf/Nanopore-Phased-May2022.conf usr/share/doc/shasta/examples/conf/Nanopore-Phased-R10-Fast-Nov2022.conf usr/share/doc/shasta/examples/conf/Nanopore-Phased-R10-Slow-Nov2022.conf usr/share/doc/shasta/examples/conf/Nanopore-Plants-Apr2021.conf usr/share/doc/shasta/examples/conf/Nanopore-R10-Fast-Nov2022.conf usr/share/doc/shasta/examples/conf/Nanopore-R10-Slow-Nov2022.conf usr/share/doc/shasta/examples/conf/Nanopore-Sep2020.conf usr/share/doc/shasta/examples/conf/Nanopore-UL-Dec2019.conf usr/share/doc/shasta/examples/conf/Nanopore-UL-Jan2022.conf usr/share/doc/shasta/examples/conf/Nanopore-UL-Jun2020.conf usr/share/doc/shasta/examples/conf/Nanopore-UL-May2022.conf usr/share/doc/shasta/examples/conf/Nanopore-UL-Oct2021.conf usr/share/doc/shasta/examples/conf/Nanopore-UL-Phased-Jan2022.conf usr/share/doc/shasta/examples/conf/Nanopore-UL-Phased-May2022.conf usr/share/doc/shasta/examples/conf/Nanopore-UL-Phased-Nov2022.conf usr/share/doc/shasta/examples/conf/Nanopore-UL-Phased-Oct2021.conf usr/share/doc/shasta/examples/conf/Nanopore-UL-Sep2020.conf usr/share/doc/shasta/examples/conf/Nanopore-UL-iterative-Sep2020.conf usr/share/doc/shasta/examples/conf/Nanopore-ncm23-May2024.conf usr/share/doc/shasta/examples/conf/Nanopore-r10.4.1_e8.2-400bps_sup-Herro-Jan2025.conf usr/share/doc/shasta/examples/conf/Nanopore-r10.4.1_e8.2-400bps_sup-Herro-Sep2024.conf usr/share/doc/shasta/examples/conf/Nanopore-r10.4.1_e8.2-400bps_sup-Raw-Jan2025.conf usr/share/doc/shasta/examples/conf/Nanopore-r10.4.1_e8.2-400bps_sup-Raw-Sep2024.conf usr/share/doc/shasta/examples/conf/PacBio-CCS-Dec2019.conf usr/share/doc/shasta/examples/conf/PacBio-CLR-Dec2019.conf usr/share/doc/shasta/examples/conf/README.md usr/share/doc/shasta/examples/conf/RemoveConflicts.conf usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-10.csv usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-11.csv usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-2.csv usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-3.csv usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-5.csv usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-6.csv usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-7.csv usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-8.csv usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-9.csv usr/share/doc/shasta/generateBandageLabelsFromAlignment.py usr/share/doc/shasta/testGlobalMsa.py usr/share/lintian usr/share/lintian/overrides usr/share/lintian/overrides/shasta usr/share/man usr/share/man/man1 usr/share/man/man1/shasta.1.gz usr/share/doc/shasta/changelog.Debian.gz