snippy (4.6.0+dfsg-6)

Details

Core information at a glance

Distribution: ubuntu
Origin: ubuntu-stonking
Repository: https://nl.archive.ubuntu.com/ubuntu
Codename: stonking
Component: universe
Source: none
Architecture: amd64
Section: universe/science
Priority: optional
Maintainer: Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size: 100 B
Size expected: 27.4 kB
Size actual: 27.4 kB
Size match

Dependencies

Required package dependencies

perl:any
any2fasta
bcftools
bedtools
bwa
freebayes (>= 1.3.6-2)
libbio-perl-perl
libvcflib-tools
minimap2
parallel
samclip
samtools
seqtk
snp-sites
snpeff
vt

Suggested packages

Recommended additional packages

None

Description

rapid haploid variant calling and core genome alignment

Homepage Download .deb

Checksums

Hash values and integrity verification status

Type	Expected	Actual
MD5	2321550c…ade5ac63	2321550c…ade5ac63
SHA-1	a2e3c9d4…8e3cf157	a2e3c9d4…8e3cf157
SHA-256	6ed3903c…1aa93a0f	6ed3903c…1aa93a0f
SHA-512	a60b99d4…56fa78ee	a60b99d4…56fa78ee

Files and directories included

.
usr
usr/bin
usr/bin/snippy
usr/bin/snippy-clean_full_aln
usr/bin/snippy-core
usr/bin/snippy-multi
usr/bin/snippy-vcf_extract_subs
usr/bin/snippy-vcf_report
usr/bin/snippy-vcf_to_tab
usr/share
usr/share/doc
usr/share/doc/snippy
usr/share/doc/snippy/README.Debian
usr/share/doc/snippy/changelog.Debian.gz
usr/share/doc/snippy/copyright
usr/share/doc/snippy/etc
usr/share/doc/snippy/etc/Mtb_NC_000962.3_mask.bed.gz
usr/share/perl5
usr/share/perl5/Snippy
usr/share/perl5/Snippy/Version.pm
usr/share/snippy
usr/share/snippy/etc
usr/share/snippy/etc/snpeff.config