srst2 (0.2.0-14)

Details

Core information at a glance

Distribution: ubuntu
Origin: ubuntu-stonking
Repository: https://nl.archive.ubuntu.com/ubuntu
Codename: stonking
Component: universe
Source: none
Architecture: amd64
Section: universe/science
Priority: optional
Maintainer: Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size: 264 B
Size expected: 62.1 kB
Size actual: 62.1 kB
Size match

Dependencies

Required package dependencies

python3:any
bowtie2
cd-hit
samtools
python3-scipy
python3-biopython

Suggested packages

Recommended additional packages

None

Description

Short Read Sequence Typing for Bacterial Pathogens

Homepage Download .deb

Checksums

Hash values and integrity verification status

Type	Expected	Actual
MD5	2eb2b5e3…fa3d8f4d	2eb2b5e3…fa3d8f4d
SHA-1	027d0d31…9891eb43	027d0d31…9891eb43
SHA-256	e9e2e773…6c8497f5	e9e2e773…6c8497f5
SHA-512	22bbebd9…ea4651ab	22bbebd9…ea4651ab

Files and directories included

.
usr
usr/bin
usr/share
usr/share/doc
usr/share/doc/srst2
usr/share/doc/srst2/README.html
usr/share/doc/srst2/changelog.Debian.gz
usr/share/doc/srst2/copyright
usr/share/doc/srst2/example.txt.gz
usr/share/doc/srst2/tests
usr/share/doc/srst2/tests/test_slurm_srst2.py.gz
usr/share/doc/srst2/tests/test_srst2.py.gz
usr/share/doc-base
usr/share/doc-base/srst2.srst2
usr/share/man
usr/share/man/man1
usr/share/man/man1/VFDB_cdhit_to_csv.1.gz
usr/share/man/man1/VFDBgenus.1.gz
usr/share/man/man1/csv_to_gene_db.1.gz
usr/share/man/man1/get_all_vfdb.1.gz
usr/share/man/man1/get_genus_vfdb.1.gz
usr/share/man/man1/getmlst.1.gz
usr/share/man/man1/slurm_srst2.1.gz
usr/share/man/man1/srst2.1.gz
usr/share/python3
usr/share/python3/runtime.d
usr/share/python3/runtime.d/srst2.rtupdate
usr/share/srst2
usr/share/srst2/__init__.py
usr/share/srst2/analyseSRST2.py
usr/share/srst2/consensus_alignment.py
usr/share/srst2/database_clustering
usr/share/srst2/database_clustering/VFDB_cdhit_to_csv.py
usr/share/srst2/database_clustering/VFDBgenus.py
usr/share/srst2/database_clustering/align_plot_tree_min3.py
usr/share/srst2/database_clustering/cdhit_to_csv.py
usr/share/srst2/database_clustering/csv_to_gene_db.py
usr/share/srst2/database_clustering/get_all_vfdb.sh
usr/share/srst2/database_clustering/get_genus_vfdb.sh
usr/share/srst2/getmlst.py
usr/share/srst2/qsub_srst2.py
usr/share/srst2/slurm_srst2.py
usr/share/srst2/srst2.py
usr/share/srst2/version.py
usr/bin/VFDB_cdhit_to_csv
usr/bin/VFDBgenus
usr/bin/csv_to_gene_db
usr/bin/get_all_vfdb
usr/bin/get_genus_vfdb
usr/bin/getmlst
usr/bin/slurm_srst2
usr/bin/srst2