trinityrnaseq-examples (2.15.2+dfsg-3)

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-stonking
Repository
https://nl.archive.ubuntu.com/ubuntu
Codename
stonking
Component
universe
Source
trinityrnaseq
Architecture
amd64
Section
universe/science
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
449.9 kB
Size expected
298.9 MB
Size actual
298.9 MB
Size match

Dependencies

Required package dependencies

  • perl:any
  • r-base-core

Suggested packages

Recommended additional packages

  • None

Description

RNA-Seq De novo Assembly common example and testing files

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD57468090d…11d37a90
SHA-1e2cf58b0…33c0ab59
SHA-2565e0eb7dc…2cf2bdf1
SHA-512be0176ba…41e9287c

Contents

Files and directories included

.
usr
usr/lib
usr/lib/trinityrnaseq
usr/share
usr/share/doc
usr/share/doc/trinityrnaseq-examples
usr/share/doc/trinityrnaseq-examples/changelog.Debian.gz
usr/share/doc/trinityrnaseq-examples/copyright
usr/share/trinityrnaseq
usr/share/trinityrnaseq/sample_data
usr/share/trinityrnaseq/sample_data/Makefile
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/Makefile
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/README
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/align_reads_via_bowtie.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/bowtie2.sam.aligned.bam
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.IGV.png
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.reads.left.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.reads.right.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.refSeq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/ex02.refSeq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/ex2.reads.left.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/ex2.reads.right.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/example2.png
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/region2.sam
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/region2.sam.adj
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/ex03.refSeq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/ex3.reads.left.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/ex3.reads.right.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/example3.png
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/region3.sam
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/region3.sam.adj
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/ex04.refSeq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/ex4.reads.left.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/ex4.reads.right.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/example4.png
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/region4.sam
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/region4.sam.adj
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/clean.left.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/clean.right.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/ex05.refSeq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/ex5.reads.left.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/ex5.reads.right.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/example5.png
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.Bfly.dot
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.bed
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.gff
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/region5.sam
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/region5.sam.adj
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.clean.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/ex06.refSeq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/ex6.reads.left.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/ex6.reads.right.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/example6.png
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/region6.sam
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/region6.sam.adj
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/ex07.refSeq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/ex7.reads.left.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/ex7.reads.right.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/example7.png
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/region7.sam
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/region7.sam.adj
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/ex08.refSeq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/ex8.reads.left.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/ex8.reads.right.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/example8.png
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/region8.sam
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/region8.sam.adj
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/ex09.refSeq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/ex9.reads.left.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/ex9.reads.right.fq
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/example9.png
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/region9.sam
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/region9.sam.adj
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/runMe.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/refSeqs.fa
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/refSeqs.fa.gene_trans_map
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/cleanme.pl
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/longReads.fa
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe.diff_kmer_length.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe.noSeqtk.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_CuffFly.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_PasaFly.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_as_DS.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_bowtie_components.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_docker.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_full_cleanup.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_include_long_reads.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_cleanup.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_para_iworm.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_salmon.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_salmon_no_cleanup.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_symlinks.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_parallel_iworm_assembly.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_piecemeal.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_trin_complete.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_use_bowtie2.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_use_my_ramdisk.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_use_workdir.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_LSF.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_SGE.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_uger.HpcGridRunner.singularity_intra.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_uger.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_wSuperReads.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_w_monitoring.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming_and_normalization.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming_and_normalize_libs_separately.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_PE_samples_file.min_kmer_cov_3.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_PE_samples_file.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_SE_samples_file.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_abundance_estimation_include_antisense.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe.singleFQ.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_NO_normalization.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_docker.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_include_normalization.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_lenient_path_extension.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_singularity.intra.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_singularity.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_with_jaccard_clip.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/runMe_no_qualTrim.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.left.fa.gz
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.left.fq.gz
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.right.fa.gz
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.right.fq.gz
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads2.left.fq.gz
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads2.right.fq.gz
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/runMe.sh
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/samples.PE.txt
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/samples.SE.txt
usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/test_FL.sh
usr/share/trinityrnaseq/trinity_ext_sample_data
usr/share/trinityrnaseq/trinity_ext_sample_data/Makefile
usr/share/trinityrnaseq/trinity_ext_sample_data/README.md
usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests
usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta
usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/both.fa.gz
usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/inchworm.K25.L25.fa.gz
usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/iworm_scaffolds.txt.gz
usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/runMe.sh
usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings
usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/Makefile
usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/ensure_min_asm.pl
usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.ForRev_1.fastq.gz
usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.ForRev_2.fastq.gz
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usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gene_trans_map
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usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.chromosome
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usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.genomebits128
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.genomecomp
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.ref133offsets64meta
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.ref133offsets64strm
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.ref133positions
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.sachildexc
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.sachildguide1024
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.saindex64meta
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.saindex64strm
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.salcpchilddc
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.salcpexc
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.salcpguide1024
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.sarray
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.version
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/candidate.Trinity_trans.TMM.EXPR.matrix
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/candidate.Trinity_trans.counts.matrix
usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/candidate.samples.txt
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