unicycler (0.5.1+dfsg-4)

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-stonking
Repository
https://nl.archive.ubuntu.com/ubuntu
Codename
stonking
Component
universe
Source
none
Architecture
amd64
Section
universe/science
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
2.9 kB
Size expected
885.3 kB
Size actual
885.3 kB
Size match

Dependencies

Required package dependencies

  • python3:any
  • libc6 (>= 2.38)
  • libgcc-s1 (>= 3.3.1)
  • libstdc++6 (>= 13.1)
  • zlib1g (>= 1:1.1.4)
  • default-jre
  • bcftools
  • bowtie2
  • miniasm
  • ncbi-blast+
  • pilon
  • racon
  • samtools
  • spades

Suggested packages

Recommended additional packages

  • None

Description

hybrid assembly pipeline for bacterial genomes

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD5640b2d84…c75aacf9
SHA-1d46c8b8a…7f02e79d
SHA-2561fc9b058…328c22a5
SHA-512059d61af…414b7f12

Contents

Files and directories included

.
usr
usr/bin
usr/bin/unicycler
usr/lib
usr/lib/python3
usr/lib/python3/dist-packages
usr/lib/python3/dist-packages/unicycler
usr/lib/python3/dist-packages/unicycler/__init__.py
usr/lib/python3/dist-packages/unicycler/alignment.py
usr/lib/python3/dist-packages/unicycler/assembly_graph.py
usr/lib/python3/dist-packages/unicycler/assembly_graph_copy_depth.py
usr/lib/python3/dist-packages/unicycler/assembly_graph_segment.py
usr/lib/python3/dist-packages/unicycler/blast_func.py
usr/lib/python3/dist-packages/unicycler/bridge_common.py
usr/lib/python3/dist-packages/unicycler/bridge_long_read.py
usr/lib/python3/dist-packages/unicycler/bridge_long_read_simple.py
usr/lib/python3/dist-packages/unicycler/bridge_loop_unroll.py
usr/lib/python3/dist-packages/unicycler/bridge_miniasm.py
usr/lib/python3/dist-packages/unicycler/bridge_spades_contig.py
usr/lib/python3/dist-packages/unicycler/cpp_functions.so
usr/lib/python3/dist-packages/unicycler/cpp_wrappers.py
usr/lib/python3/dist-packages/unicycler/gene_data
usr/lib/python3/dist-packages/unicycler/gene_data/lambda_phage.fasta
usr/lib/python3/dist-packages/unicycler/gene_data/start_genes.fasta
usr/lib/python3/dist-packages/unicycler/log.py
usr/lib/python3/dist-packages/unicycler/miniasm_assembly.py
usr/lib/python3/dist-packages/unicycler/minimap_alignment.py
usr/lib/python3/dist-packages/unicycler/misc.py
usr/lib/python3/dist-packages/unicycler/path_finding.py
usr/lib/python3/dist-packages/unicycler/read_ref.py
usr/lib/python3/dist-packages/unicycler/settings.py
usr/lib/python3/dist-packages/unicycler/spades_func.py
usr/lib/python3/dist-packages/unicycler/string_graph.py
usr/lib/python3/dist-packages/unicycler/unicycler.py
usr/lib/python3/dist-packages/unicycler/unicycler_align.py
usr/lib/python3/dist-packages/unicycler/version.py
usr/lib/python3/dist-packages/unicycler-0.5.1.egg-info
usr/lib/python3/dist-packages/unicycler-0.5.1.egg-info/PKG-INFO
usr/lib/python3/dist-packages/unicycler-0.5.1.egg-info/dependency_links.txt
usr/lib/python3/dist-packages/unicycler-0.5.1.egg-info/entry_points.txt
usr/lib/python3/dist-packages/unicycler-0.5.1.egg-info/not-zip-safe
usr/lib/python3/dist-packages/unicycler-0.5.1.egg-info/top_level.txt
usr/share
usr/share/doc
usr/share/doc/unicycler
usr/share/doc/unicycler/README.test
usr/share/doc/unicycler/changelog.Debian.gz
usr/share/doc/unicycler/copyright
usr/share/doc/unicycler/run-unit-test
usr/share/man
usr/share/man/man1
usr/share/man/man1/unicycler.1.gz
usr/share/man/man1/unicycler_align.1.gz
usr/share/man/man1/unicycler_check.1.gz
usr/share/man/man1/unicycler_polish.1.gz
usr/share/man/man1/unicycler_scrub.1.gz