wtdbg2 (2.5-11)

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-stonking
Repository
https://nl.archive.ubuntu.com/ubuntu
Codename
stonking
Component
universe
Source
none
Architecture
amd64
Section
universe/science
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
6.7 kB
Size expected
788.1 kB
Size actual
788.1 kB
Size match

Dependencies

Required package dependencies

  • libc6 (>= 2.38)
  • zlib1g (>= 1:1.2.0)

Suggested packages

Recommended additional packages

  • perl:any
  • minimap2
  • samtools
  • mummer
  • wtdbg2-examples

Description

de novo sequence assembler for long noisy reads

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD55c8b7fa6…79330d1b
SHA-1b97399dd…1301b5fa
SHA-2561b0831fe…3dbca4ae
SHA-512ee404294…ccd6e4ec

Contents

Files and directories included

.
usr
usr/bin
usr/lib
usr/lib/wtdbg2
usr/lib/wtdbg2/kbm2-avx
usr/lib/wtdbg2/kbm2-avx2
usr/lib/wtdbg2/kbm2-sse2
usr/lib/wtdbg2/kbm2-sse3
usr/lib/wtdbg2/kbm2-sse4.1
usr/lib/wtdbg2/kbm2-ssse3
usr/lib/wtdbg2/pgzf-avx
usr/lib/wtdbg2/pgzf-avx2
usr/lib/wtdbg2/pgzf-sse2
usr/lib/wtdbg2/pgzf-sse3
usr/lib/wtdbg2/pgzf-sse4.1
usr/lib/wtdbg2/pgzf-ssse3
usr/lib/wtdbg2/simd-dispatch
usr/lib/wtdbg2/wtdbg-cns-avx
usr/lib/wtdbg2/wtdbg-cns-avx2
usr/lib/wtdbg2/wtdbg-cns-sse2
usr/lib/wtdbg2/wtdbg-cns-sse3
usr/lib/wtdbg2/wtdbg-cns-sse4.1
usr/lib/wtdbg2/wtdbg-cns-ssse3
usr/lib/wtdbg2/wtdbg2-avx
usr/lib/wtdbg2/wtdbg2-avx2
usr/lib/wtdbg2/wtdbg2-sse2
usr/lib/wtdbg2/wtdbg2-sse3
usr/lib/wtdbg2/wtdbg2-sse4.1
usr/lib/wtdbg2/wtdbg2-ssse3
usr/lib/wtdbg2/wtpoa-cns-avx
usr/lib/wtdbg2/wtpoa-cns-avx2
usr/lib/wtdbg2/wtpoa-cns-sse2
usr/lib/wtdbg2/wtpoa-cns-sse3
usr/lib/wtdbg2/wtpoa-cns-sse4.1
usr/lib/wtdbg2/wtpoa-cns-ssse3
usr/share
usr/share/doc
usr/share/doc/wtdbg2
usr/share/doc/wtdbg2/README.md.gz
usr/share/doc/wtdbg2/changelog.Debian.gz
usr/share/doc/wtdbg2/copyright
usr/share/man
usr/share/man/man1
usr/share/man/man1/kbm2.1.gz
usr/share/man/man1/pgzf.1.gz
usr/share/man/man1/wtdbg-cns.1.gz
usr/share/man/man1/wtdbg2.1.gz
usr/share/man/man1/wtpoa-cns.1.gz
usr/share/wtdbg2
usr/share/wtdbg2/best_kbm_hit.pl
usr/share/wtdbg2/best_minimap_hit.pl
usr/share/wtdbg2/best_sam_hits4longreads.pl
usr/share/wtdbg2/dbm_index_dot.pl
usr/share/wtdbg2/dbm_index_fa.pl
usr/share/wtdbg2/dbm_read_dot.pl
usr/share/wtdbg2/dbm_read_fa.pl
usr/share/wtdbg2/fa2fq.pl
usr/share/wtdbg2/fa2tab.pl
usr/share/wtdbg2/first_n_bases.pl
usr/share/wtdbg2/first_n_seqs.pl
usr/share/wtdbg2/fq2fa.pl
usr/share/wtdbg2/hlcolor
usr/share/wtdbg2/longest_pacbio_subreads.pl
usr/share/wtdbg2/mmpoa.pl
usr/share/wtdbg2/mum_assess.sh
usr/share/wtdbg2/num_n50.pl
usr/share/wtdbg2/rename_fa.pl
usr/share/wtdbg2/rename_fq.pl
usr/share/wtdbg2/rev_seq.pl
usr/share/wtdbg2/runit.pl
usr/share/wtdbg2/sam2dbgcns.pl
usr/share/wtdbg2/seq_n50.pl
usr/share/wtdbg2/split_seqs_2.pl
usr/share/wtdbg2/split_seqs_3.pl
usr/share/wtdbg2/wtdbg-dot2gfa.pl
usr/bin/kbm2
usr/bin/pgzf
usr/bin/wtdbg-cns
usr/bin/wtdbg2
usr/bin/wtpoa-cns