bedtools-test (2.31.1+dfsg-3)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- bedtools
- Architecture
- amd64v3
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 46.8 kB
- Size expected
- 12.4 MB
- Size actual
- 12.4 MB
- Size match
Description
test data for the bedtools package
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 767093e8…68da064c | |
| SHA-1 | bcce7d00…81e05c3a | |
| SHA-256 | ad923104…d0d868d9 | |
| SHA-512 | faebcaf4…9917e92a |
Contents
Files and directories included
. usr usr/share usr/share/bedtools usr/share/bedtools/data usr/share/bedtools/data/aluY.chr1.bed.gz usr/share/bedtools/data/gerp.chr1.bed.gz usr/share/bedtools/data/knownGene.hg18.chr21.bed usr/share/bedtools/data/knownGene.hg18.chr21.short.bed usr/share/bedtools/data/refseq.chr1.exons.bed.gz usr/share/bedtools/data/simpleRepeats.chr1.bed.gz usr/share/bedtools/test usr/share/bedtools/test/bamtobed usr/share/bedtools/test/bamtobed/extra-long-header.sam.gz usr/share/bedtools/test/bamtobed/numeric_tag.sam usr/share/bedtools/test/bamtobed/one_block.sam usr/share/bedtools/test/bamtobed/test-bamtobed.sh usr/share/bedtools/test/bamtobed/three_blocks.sam usr/share/bedtools/test/bamtobed/two_blocks.sam usr/share/bedtools/test/bamtobed/two_blocks_w_D.sam usr/share/bedtools/test/bamtofastq usr/share/bedtools/test/bamtofastq/golden.fq usr/share/bedtools/test/bamtofastq/golden.fq2 usr/share/bedtools/test/bamtofastq/test-bamtofastq.sh usr/share/bedtools/test/bamtofastq/test.sam usr/share/bedtools/test/bamtofastq/test2.sam usr/share/bedtools/test/bed12tobed6 usr/share/bedtools/test/bed12tobed6/bed6.bed usr/share/bedtools/test/bed12tobed6/one_blocks.bed usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh usr/share/bedtools/test/bed12tobed6/three_blocks.bed usr/share/bedtools/test/bed12tobed6/two_blocks.bed usr/share/bedtools/test/bedtobam usr/share/bedtools/test/bedtobam/chrsize.tmp usr/share/bedtools/test/bedtobam/test-bedtobam.sh usr/share/bedtools/test/bigchroms usr/share/bedtools/test/bigchroms/abig.bed usr/share/bedtools/test/bigchroms/big4.bed usr/share/bedtools/test/bigchroms/big4c.bed usr/share/bedtools/test/bigchroms/bigx.bed usr/share/bedtools/test/bigchroms/make-big-chrom.py usr/share/bedtools/test/bigchroms/test-bigchroms.sh usr/share/bedtools/test/closest usr/share/bedtools/test/closest/a.bed usr/share/bedtools/test/closest/a.names.bed usr/share/bedtools/test/closest/a2.bed usr/share/bedtools/test/closest/b-one-bp-closer.bed usr/share/bedtools/test/closest/b.bed usr/share/bedtools/test/closest/b.names.bed usr/share/bedtools/test/closest/b2.bed usr/share/bedtools/test/closest/bug157_a.bed usr/share/bedtools/test/closest/bug157_b.bed usr/share/bedtools/test/closest/bug281_a.flip.medium.bed usr/share/bedtools/test/closest/bug281_a.medium.bed usr/share/bedtools/test/closest/bug281_b.bed usr/share/bedtools/test/closest/bug281_b.flip.bed usr/share/bedtools/test/closest/close-a.bed usr/share/bedtools/test/closest/close-b.bed usr/share/bedtools/test/closest/d.bed usr/share/bedtools/test/closest/d4.bed usr/share/bedtools/test/closest/d_d1F.bed usr/share/bedtools/test/closest/d_d1R.bed usr/share/bedtools/test/closest/d_d2F.bed usr/share/bedtools/test/closest/d_d2R.bed usr/share/bedtools/test/closest/d_id.bed usr/share/bedtools/test/closest/d_iu.bed usr/share/bedtools/test/closest/d_q1.bed usr/share/bedtools/test/closest/d_q2.bed usr/share/bedtools/test/closest/dmr.bed usr/share/bedtools/test/closest/islands.2.bed usr/share/bedtools/test/closest/islands.bed usr/share/bedtools/test/closest/kclosest usr/share/bedtools/test/closest/kclosest/bug471_a.bed usr/share/bedtools/test/closest/kclosest/bug471_b.bed usr/share/bedtools/test/closest/kclosest/d1.bed usr/share/bedtools/test/closest/kclosest/d2.bed usr/share/bedtools/test/closest/kclosest/d3.bed usr/share/bedtools/test/closest/kclosest/q1.bed usr/share/bedtools/test/closest/kclosest/q2.bed usr/share/bedtools/test/closest/kclosest/test-kclosest.sh usr/share/bedtools/test/closest/mdb1.bed usr/share/bedtools/test/closest/mdb2.bed usr/share/bedtools/test/closest/mdb3.bed usr/share/bedtools/test/closest/mq1.bed usr/share/bedtools/test/closest/null_a.bed usr/share/bedtools/test/closest/null_b.bed usr/share/bedtools/test/closest/null_c.bed usr/share/bedtools/test/closest/shores.bed usr/share/bedtools/test/closest/sortAndNaming usr/share/bedtools/test/closest/sortAndNaming/alpha_all.bed usr/share/bedtools/test/closest/sortAndNaming/alpha_missing.bed usr/share/bedtools/test/closest/sortAndNaming/db1_gls.bed usr/share/bedtools/test/closest/sortAndNaming/db1_leadingZero.txt usr/share/bedtools/test/closest/sortAndNaming/db1_noChr.bed usr/share/bedtools/test/closest/sortAndNaming/db1_num.bed usr/share/bedtools/test/closest/sortAndNaming/db2_num.bed usr/share/bedtools/test/closest/sortAndNaming/db2_numBackwards.bed usr/share/bedtools/test/closest/sortAndNaming/db3_numBackwards.bed usr/share/bedtools/test/closest/sortAndNaming/num_all.bed usr/share/bedtools/test/closest/sortAndNaming/num_missing.bed usr/share/bedtools/test/closest/sortAndNaming/q1_gls.bed usr/share/bedtools/test/closest/sortAndNaming/q1_num.bed usr/share/bedtools/test/closest/sortAndNaming/q1a_num.bed usr/share/bedtools/test/closest/sortAndNaming/sdb1.bed usr/share/bedtools/test/closest/sortAndNaming/sq1.bed usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh usr/share/bedtools/test/closest/strand-test-a.bed usr/share/bedtools/test/closest/strand-test-b.bed usr/share/bedtools/test/closest/strand-test-c.bed usr/share/bedtools/test/closest/strand-test-d.bed usr/share/bedtools/test/closest/test-closest.sh usr/share/bedtools/test/closest/tfbs.bed usr/share/bedtools/test/cluster usr/share/bedtools/test/cluster/in.bed usr/share/bedtools/test/cluster/test-cluster.sh usr/share/bedtools/test/complement usr/share/bedtools/test/complement/issue_503.bed usr/share/bedtools/test/complement/issue_503.genome usr/share/bedtools/test/complement/test-complement.sh usr/share/bedtools/test/coverage usr/share/bedtools/test/coverage/a.bed usr/share/bedtools/test/coverage/b.bed usr/share/bedtools/test/coverage/c.bed usr/share/bedtools/test/coverage/chr_0-100.bed usr/share/bedtools/test/coverage/one_block.bam.bai usr/share/bedtools/test/coverage/one_block.sam usr/share/bedtools/test/coverage/sam-w-del.bam.bai usr/share/bedtools/test/coverage/sam-w-del.sam usr/share/bedtools/test/coverage/test-coverage.sh usr/share/bedtools/test/coverage/three_blocks.bam.bai usr/share/bedtools/test/coverage/three_blocks.sam usr/share/bedtools/test/coverage/three_blocks_match.bam usr/share/bedtools/test/coverage/three_blocks_match.bed usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed usr/share/bedtools/test/coverage/three_blocks_nomatch.bed usr/share/bedtools/test/coverage/two_blocks.bam.bai usr/share/bedtools/test/coverage/two_blocks.sam usr/share/bedtools/test/coverage/x.bed usr/share/bedtools/test/coverage/y.bed usr/share/bedtools/test/expand usr/share/bedtools/test/expand/expand.txt usr/share/bedtools/test/expand/test-expand.sh usr/share/bedtools/test/fisher usr/share/bedtools/test/fisher/README.md usr/share/bedtools/test/fisher/a.bed usr/share/bedtools/test/fisher/a_merge.bed usr/share/bedtools/test/fisher/b.bed usr/share/bedtools/test/fisher/cmp.sh usr/share/bedtools/test/fisher/dm6.fai usr/share/bedtools/test/fisher/get.sh usr/share/bedtools/test/fisher/issue954.genome usr/share/bedtools/test/fisher/issue954_a.bed usr/share/bedtools/test/fisher/issue954_b.bed usr/share/bedtools/test/fisher/plot.py usr/share/bedtools/test/fisher/shuf.sh usr/share/bedtools/test/fisher/sim.py usr/share/bedtools/test/fisher/t.500.genome usr/share/bedtools/test/fisher/t.60.genome usr/share/bedtools/test/fisher/test-fisher.sh usr/share/bedtools/test/fisher/test.bed usr/share/bedtools/test/fisher/tumor.gff usr/share/bedtools/test/flank usr/share/bedtools/test/flank/a.bed usr/share/bedtools/test/flank/test-flank.sh usr/share/bedtools/test/flank/tiny.genome usr/share/bedtools/test/general usr/share/bedtools/test/general/a.chromheader.bed usr/share/bedtools/test/general/a.trackheader.bed usr/share/bedtools/test/general/empty.bed usr/share/bedtools/test/general/hg19.fa.fai usr/share/bedtools/test/general/non-empty.bed.gz usr/share/bedtools/test/general/t.bed usr/share/bedtools/test/general/test-general.sh usr/share/bedtools/test/genomecov usr/share/bedtools/test/genomecov/chip.sam usr/share/bedtools/test/genomecov/empty.bam usr/share/bedtools/test/genomecov/empty.cram usr/share/bedtools/test/genomecov/genome.txt usr/share/bedtools/test/genomecov/mk-deep.py usr/share/bedtools/test/genomecov/one_block.sam usr/share/bedtools/test/genomecov/pair-chip.sam usr/share/bedtools/test/genomecov/sam-w-del.sam usr/share/bedtools/test/genomecov/test-genomecov.sh usr/share/bedtools/test/genomecov/test_ref.fa usr/share/bedtools/test/genomecov/test_ref.fa.fai usr/share/bedtools/test/genomecov/three_blocks.sam usr/share/bedtools/test/genomecov/three_blocks_match.bed usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed usr/share/bedtools/test/genomecov/two_blocks.sam usr/share/bedtools/test/genomecov/y.bam usr/share/bedtools/test/genomecov/y.bed usr/share/bedtools/test/getfasta usr/share/bedtools/test/getfasta/blocks.bed usr/share/bedtools/test/getfasta/rna.bed usr/share/bedtools/test/getfasta/rna.fasta usr/share/bedtools/test/getfasta/rna.fasta.fai usr/share/bedtools/test/getfasta/t.bed usr/share/bedtools/test/getfasta/t.fa usr/share/bedtools/test/getfasta/t.fa.fai usr/share/bedtools/test/getfasta/t.fa.gz usr/share/bedtools/test/getfasta/t.fa.gz.fai usr/share/bedtools/test/getfasta/t.fa.gz.gzi usr/share/bedtools/test/getfasta/t_fH.fa usr/share/bedtools/test/getfasta/t_fH.fa.fai usr/share/bedtools/test/getfasta/test-getfasta.sh usr/share/bedtools/test/getfasta/test.iupac.bed usr/share/bedtools/test/getfasta/test.iupac.fa usr/share/bedtools/test/groupby usr/share/bedtools/test/groupby/a_vcfSVtest.vcf usr/share/bedtools/test/groupby/bug569_problem.txt usr/share/bedtools/test/groupby/gdc.bam usr/share/bedtools/test/groupby/noPosvalues.header.bed usr/share/bedtools/test/groupby/test-groupby.sh usr/share/bedtools/test/groupby/test.bed usr/share/bedtools/test/groupby/values3.7fields.header.bed usr/share/bedtools/test/groupby/values3.header.bed usr/share/bedtools/test/groupby/values3.no_header.bed usr/share/bedtools/test/groupby/values3.unmarked_header.bed usr/share/bedtools/test/groupby/values3.unmarked_header.bed.2 usr/share/bedtools/test/groupby/values3_case.header.bed usr/share/bedtools/test/intersect usr/share/bedtools/test/intersect/a.bam usr/share/bedtools/test/intersect/a.bed usr/share/bedtools/test/intersect/a.cram usr/share/bedtools/test/intersect/a.issue311.bed usr/share/bedtools/test/intersect/aVSb.bam usr/share/bedtools/test/intersect/aWithHeaderVsB.txt usr/share/bedtools/test/intersect/a_bgzipped.bed.gz usr/share/bedtools/test/intersect/a_gzipped.bed.gz usr/share/bedtools/test/intersect/a_testZeroLen.bed usr/share/bedtools/test/intersect/a_vcfSVtest.vcf usr/share/bedtools/test/intersect/a_withLargeHeader.bed usr/share/bedtools/test/intersect/a_withLargeHeader_bgzipped.bed.gz usr/share/bedtools/test/intersect/a_withLargeHeader_gzipped.bed.gz usr/share/bedtools/test/intersect/a_with_bothUnmapped.bam usr/share/bedtools/test/intersect/b.bed usr/share/bedtools/test/intersect/b.cram usr/share/bedtools/test/intersect/b.issue311.gff usr/share/bedtools/test/intersect/b.issue311.vcf usr/share/bedtools/test/intersect/b_testZeroLen.bed usr/share/bedtools/test/intersect/b_vcfSVtest.vcf usr/share/bedtools/test/intersect/bed3.bed usr/share/bedtools/test/intersect/bed4.bed usr/share/bedtools/test/intersect/bed5.bed usr/share/bedtools/test/intersect/bed6.bed usr/share/bedtools/test/intersect/bed6.strand.bed usr/share/bedtools/test/intersect/bed6.strand2.bed usr/share/bedtools/test/intersect/bedplus.bed usr/share/bedtools/test/intersect/blocks.bed12 usr/share/bedtools/test/intersect/bug150_a.bed usr/share/bedtools/test/intersect/bug150_b.bed usr/share/bedtools/test/intersect/bug167_strandSweep.bed usr/share/bedtools/test/intersect/bug187_a.bed usr/share/bedtools/test/intersect/bug187_b.bed usr/share/bedtools/test/intersect/bug223_d.vcf usr/share/bedtools/test/intersect/bug223_e.vcf usr/share/bedtools/test/intersect/bug223_f.vcf usr/share/bedtools/test/intersect/bug223_sv1_a.vcf usr/share/bedtools/test/intersect/bug223_sv1_b.vcf usr/share/bedtools/test/intersect/bug44_a.vcf.gz usr/share/bedtools/test/intersect/bug44_b.bed usr/share/bedtools/test/intersect/c.bed usr/share/bedtools/test/intersect/chromOrderA.bed usr/share/bedtools/test/intersect/chromOrderB.bed usr/share/bedtools/test/intersect/chromsOutOfOrder.bed usr/share/bedtools/test/intersect/d.bed usr/share/bedtools/test/intersect/dosLineCharWithExtraTab_b.bed usr/share/bedtools/test/intersect/dosLineChar_a.bed usr/share/bedtools/test/intersect/e.bed usr/share/bedtools/test/intersect/exons.issue750.bed usr/share/bedtools/test/intersect/foo usr/share/bedtools/test/intersect/gdc.bam usr/share/bedtools/test/intersect/gdc.gff usr/share/bedtools/test/intersect/gdc_exp usr/share/bedtools/test/intersect/gdc_one.bed usr/share/bedtools/test/intersect/headerOnly.vcf usr/share/bedtools/test/intersect/human.hg19.genome usr/share/bedtools/test/intersect/human.hg19.vSort.genome usr/share/bedtools/test/intersect/issue-919.bed usr/share/bedtools/test/intersect/issue-919.region.bed usr/share/bedtools/test/intersect/issue_773_b.bed usr/share/bedtools/test/intersect/issue_773_y.bed usr/share/bedtools/test/intersect/j1.bed usr/share/bedtools/test/intersect/jim.bed usr/share/bedtools/test/intersect/jim.vcf usr/share/bedtools/test/intersect/large_a.bed usr/share/bedtools/test/intersect/large_b.bed usr/share/bedtools/test/intersect/mapped_and_unmapped.sam usr/share/bedtools/test/intersect/multi_intersect usr/share/bedtools/test/intersect/multi_intersect/d1.bed usr/share/bedtools/test/intersect/multi_intersect/d2.bed usr/share/bedtools/test/intersect/multi_intersect/d3.bed usr/share/bedtools/test/intersect/multi_intersect/d4.bed usr/share/bedtools/test/intersect/multi_intersect/d5.bed usr/share/bedtools/test/intersect/multi_intersect/d6.bed usr/share/bedtools/test/intersect/multi_intersect/d7.bed usr/share/bedtools/test/intersect/multi_intersect/d8.bed usr/share/bedtools/test/intersect/multi_intersect/d9.bed usr/share/bedtools/test/intersect/multi_intersect/g.bed usr/share/bedtools/test/intersect/multi_intersect/query.bed usr/share/bedtools/test/intersect/multi_intersect/query2.bed usr/share/bedtools/test/intersect/multi_intersect/query3.bed usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh usr/share/bedtools/test/intersect/new_test-intersect.sh usr/share/bedtools/test/intersect/nonamecheck_a.bed usr/share/bedtools/test/intersect/nonamecheck_b.bed usr/share/bedtools/test/intersect/notexthdr.bam usr/share/bedtools/test/intersect/null_a.bed usr/share/bedtools/test/intersect/null_b.bed usr/share/bedtools/test/intersect/null_c.bed usr/share/bedtools/test/intersect/oneRecordNoNewline.bed usr/share/bedtools/test/intersect/oneUnmapped.bam usr/share/bedtools/test/intersect/one_block.sam usr/share/bedtools/test/intersect/performanceTest.sh usr/share/bedtools/test/intersect/queryUnmappedMateMappedCoordsInvalid.bam usr/share/bedtools/test/intersect/recordsOutOfOrder.bed usr/share/bedtools/test/intersect/sortAndNaming usr/share/bedtools/test/intersect/sortAndNaming/alpha_all.bed usr/share/bedtools/test/intersect/sortAndNaming/alpha_missing.bed usr/share/bedtools/test/intersect/sortAndNaming/bigTests usr/share/bedtools/test/intersect/sortAndNaming/bigTests/2.21_500Kvs500K.txt usr/share/bedtools/test/intersect/sortAndNaming/bigTests/2.21_5v5.txt usr/share/bedtools/test/intersect/sortAndNaming/bigTests/2.21_chr1.txt usr/share/bedtools/test/intersect/sortAndNaming/bigTests/curr500Kvs500K.txt usr/share/bedtools/test/intersect/sortAndNaming/bigTests/curr5v5.txt usr/share/bedtools/test/intersect/sortAndNaming/bigTests/currChr1.txt usr/share/bedtools/test/intersect/sortAndNaming/bigTests/db500K.bed usr/share/bedtools/test/intersect/sortAndNaming/bigTests/dbchr1.bed usr/share/bedtools/test/intersect/sortAndNaming/bigTests/diffs.txt usr/share/bedtools/test/intersect/sortAndNaming/bigTests/q500K.bed usr/share/bedtools/test/intersect/sortAndNaming/bigTests/qchr1.bed usr/share/bedtools/test/intersect/sortAndNaming/db1_gls.bed usr/share/bedtools/test/intersect/sortAndNaming/db1_leadingZero.txt usr/share/bedtools/test/intersect/sortAndNaming/db1_noChr.bed usr/share/bedtools/test/intersect/sortAndNaming/db1_num.bed usr/share/bedtools/test/intersect/sortAndNaming/db2_num.bed usr/share/bedtools/test/intersect/sortAndNaming/db2_numBackwards.bed usr/share/bedtools/test/intersect/sortAndNaming/db3_numBackwards.bed usr/share/bedtools/test/intersect/sortAndNaming/diffs.txt usr/share/bedtools/test/intersect/sortAndNaming/exp1 usr/share/bedtools/test/intersect/sortAndNaming/num_all.bed usr/share/bedtools/test/intersect/sortAndNaming/num_missing.bed usr/share/bedtools/test/intersect/sortAndNaming/q1_gls.bed usr/share/bedtools/test/intersect/sortAndNaming/q1_num.bed usr/share/bedtools/test/intersect/sortAndNaming/q1a_num.bed usr/share/bedtools/test/intersect/sortAndNaming/sdb1.bed usr/share/bedtools/test/intersect/sortAndNaming/sq1.bed usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh usr/share/bedtools/test/intersect/split.issue750.bam usr/share/bedtools/test/intersect/split.issue750.sam usr/share/bedtools/test/intersect/splitBug155_a.bed usr/share/bedtools/test/intersect/splitBug155_b.bed usr/share/bedtools/test/intersect/strand_with_star.a.bed usr/share/bedtools/test/intersect/strand_with_star.b.bed usr/share/bedtools/test/intersect/svlen.vcf usr/share/bedtools/test/intersect/test-intersect.sh usr/share/bedtools/test/intersect/test_ref.fa usr/share/bedtools/test/intersect/test_ref.fa.fai usr/share/bedtools/test/intersect/three_blocks.sam usr/share/bedtools/test/intersect/three_blocks_match.bam usr/share/bedtools/test/intersect/three_blocks_match.bed usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed usr/share/bedtools/test/intersect/three_blocks_nomatch.bed usr/share/bedtools/test/intersect/two_blocks.sam usr/share/bedtools/test/intersect/two_blocks_partial.bam usr/share/bedtools/test/intersect/two_blocks_partial.bam.bai usr/share/bedtools/test/intersect/two_blocks_partial.bed usr/share/bedtools/test/intersect/ultra-long-bed4.bed usr/share/bedtools/test/intersect/x.bam usr/share/bedtools/test/intersect/x.bed usr/share/bedtools/test/intersect/y.bed usr/share/bedtools/test/jaccard usr/share/bedtools/test/jaccard/a.bam usr/share/bedtools/test/jaccard/a.bed usr/share/bedtools/test/jaccard/a645.bed usr/share/bedtools/test/jaccard/aMixedStrands.bed usr/share/bedtools/test/jaccard/b.bed usr/share/bedtools/test/jaccard/b645.bed usr/share/bedtools/test/jaccard/bMixedStrands.bed usr/share/bedtools/test/jaccard/c.bed usr/share/bedtools/test/jaccard/e.bed usr/share/bedtools/test/jaccard/long.bed usr/share/bedtools/test/jaccard/short.bed usr/share/bedtools/test/jaccard/test-jaccard.sh usr/share/bedtools/test/jaccard/three_blocks_match.bam usr/share/bedtools/test/jaccard/three_blocks_match.bed usr/share/bedtools/test/makewindows usr/share/bedtools/test/makewindows/a.19bp.bed usr/share/bedtools/test/makewindows/a.20bp.bed usr/share/bedtools/test/makewindows/a.33bp.bed usr/share/bedtools/test/makewindows/input.bed usr/share/bedtools/test/makewindows/test-makewindows.sh usr/share/bedtools/test/map usr/share/bedtools/test/map/.RData usr/share/bedtools/test/map/.Rhistory usr/share/bedtools/test/map/a.vsorted.bed usr/share/bedtools/test/map/b.vsorted.bed usr/share/bedtools/test/map/bug262_a.bed usr/share/bedtools/test/map/bug262_b.bed usr/share/bedtools/test/map/d.bed usr/share/bedtools/test/map/fullFields.bam usr/share/bedtools/test/map/genome usr/share/bedtools/test/map/ivls.bed usr/share/bedtools/test/map/ivls2.bed usr/share/bedtools/test/map/t.bed usr/share/bedtools/test/map/test-map.sh usr/share/bedtools/test/map/test.gff usr/share/bedtools/test/map/test.vcf usr/share/bedtools/test/map/three_blocks_match.bed usr/share/bedtools/test/map/three_blocks_nomatch.bed usr/share/bedtools/test/map/values.bam usr/share/bedtools/test/map/values.bed usr/share/bedtools/test/map/values2.bed usr/share/bedtools/test/map/values3.bed usr/share/bedtools/test/map/values4.bed usr/share/bedtools/test/map/values5.bed usr/share/bedtools/test/merge usr/share/bedtools/test/merge/a.bed usr/share/bedtools/test/merge/a.full.bam usr/share/bedtools/test/merge/a.full.bed usr/share/bedtools/test/merge/a.gff usr/share/bedtools/test/merge/a.names.bed usr/share/bedtools/test/merge/b.bed usr/share/bedtools/test/merge/bamCol10Collapse.txt usr/share/bedtools/test/merge/bamCol11Collapse.txt usr/share/bedtools/test/merge/bamCol1Collapse.txt usr/share/bedtools/test/merge/bamCol3Collapse.txt usr/share/bedtools/test/merge/bamCol4Mean.txt usr/share/bedtools/test/merge/bamCol5Mean.txt usr/share/bedtools/test/merge/bamCol6Collapse.txt usr/share/bedtools/test/merge/bamCol7Collapse.txt usr/share/bedtools/test/merge/bamCol8Mean.txt usr/share/bedtools/test/merge/bamCol9Mean.txt usr/share/bedtools/test/merge/bug254_c.bed usr/share/bedtools/test/merge/bug254_d.bed usr/share/bedtools/test/merge/bug254_e.bed usr/share/bedtools/test/merge/chained.bed.gz usr/share/bedtools/test/merge/expFormat.bed usr/share/bedtools/test/merge/fullFields.bam usr/share/bedtools/test/merge/mergeBugTest.bed usr/share/bedtools/test/merge/mixedStrands.bed usr/share/bedtools/test/merge/precisionTest.bed usr/share/bedtools/test/merge/precisionTest2.bed usr/share/bedtools/test/merge/test-merge.sh usr/share/bedtools/test/merge/testA.vcf usr/share/bedtools/test/merge/unsorted.bed usr/share/bedtools/test/merge/vcfSVtest.vcf usr/share/bedtools/test/multicov usr/share/bedtools/test/multicov/multicov.bed usr/share/bedtools/test/multicov/one_block.sam usr/share/bedtools/test/multicov/test-multi.2.sam usr/share/bedtools/test/multicov/test-multi.bed usr/share/bedtools/test/multicov/test-multi.sam usr/share/bedtools/test/multicov/test-multicov.sh usr/share/bedtools/test/multicov/two_blocks.sam usr/share/bedtools/test/negativecontrol usr/share/bedtools/test/negativecontrol/test-negativecontrol.sh usr/share/bedtools/test/reldist usr/share/bedtools/test/reldist/issue_711.a.bed usr/share/bedtools/test/reldist/issue_711.b.bed usr/share/bedtools/test/reldist/test-reldist.sh usr/share/bedtools/test/sample usr/share/bedtools/test/sample/human.hg19.genome usr/share/bedtools/test/sample/test-sample.sh usr/share/bedtools/test/shift usr/share/bedtools/test/shift/a.bed usr/share/bedtools/test/shift/b.bed usr/share/bedtools/test/shift/huge.genome usr/share/bedtools/test/shift/issue_807.bed usr/share/bedtools/test/shift/issue_807.genomesize usr/share/bedtools/test/shift/test-shift.sh usr/share/bedtools/test/shift/tiny.genome usr/share/bedtools/test/shuffle usr/share/bedtools/test/shuffle/excl.bed usr/share/bedtools/test/shuffle/incl.bed usr/share/bedtools/test/shuffle/incl.sizedif.bed usr/share/bedtools/test/shuffle/simrep.bed usr/share/bedtools/test/shuffle/test-shuffle.sh usr/share/bedtools/test/slop usr/share/bedtools/test/slop/a.bed usr/share/bedtools/test/slop/test-slop.sh usr/share/bedtools/test/slop/tiny.genome usr/share/bedtools/test/sort usr/share/bedtools/test/sort/a.bed usr/share/bedtools/test/sort/b.bed usr/share/bedtools/test/sort/names.txt usr/share/bedtools/test/sort/test-sort.sh usr/share/bedtools/test/spacing usr/share/bedtools/test/spacing/a.bed usr/share/bedtools/test/spacing/test-spacing.sh usr/share/bedtools/test/split usr/share/bedtools/test/split/randData.bed usr/share/bedtools/test/split/test-split.sh usr/share/bedtools/test/subtract usr/share/bedtools/test/subtract/a.bed usr/share/bedtools/test/subtract/b.bed usr/share/bedtools/test/subtract/b2.bed usr/share/bedtools/test/subtract/c.bed usr/share/bedtools/test/subtract/d.bed usr/share/bedtools/test/subtract/test-subtract.sh usr/share/bedtools/test/test.sh usr/share/doc usr/share/doc/bedtools-test usr/share/doc/bedtools-test/changelog.Debian.gz usr/share/doc/bedtools-test/copyright