biobambam2 (2.0.185+ds-2build1)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- none
- Architecture
- amd64v3
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 59 kB
- Size expected
- 10.5 MB
- Size actual
- 10.5 MB
- Size match
Dependencies
Required package dependencies
Suggested packages
Recommended additional packages
- None
Description
tools for early stage alignment file processing
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | c8220038…263895d2 | |
| SHA-1 | 2ef41ca8…569d35b0 | |
| SHA-256 | f7f6f008…18789a6d | |
| SHA-512 | 247f0ddf…8feecdcc |
Contents
Files and directories included
. usr usr/bin usr/bin/bam12auxmerge usr/bin/bam12split usr/bin/bam12strip usr/bin/bamadapterclip usr/bin/bamadapterfind usr/bin/bamalignfrac usr/bin/bamauxmerge usr/bin/bamauxmerge2 usr/bin/bamauxsort usr/bin/bamcat usr/bin/bamchecksort usr/bin/bamclipXT usr/bin/bamclipreinsert usr/bin/bamcollate2 usr/bin/bamdepth usr/bin/bamdepthintersect usr/bin/bamdifference usr/bin/bamdownsamplerandom usr/bin/bamexplode usr/bin/bamexploderef usr/bin/bamfastcat usr/bin/bamfastexploderef usr/bin/bamfastnumextract usr/bin/bamfastsplit usr/bin/bamfeaturecount usr/bin/bamfillquery usr/bin/bamfilteraux usr/bin/bamfiltereofblocks usr/bin/bamfilterflags usr/bin/bamfilterheader usr/bin/bamfilterheader2 usr/bin/bamfilterk usr/bin/bamfilterlength usr/bin/bamfiltermc usr/bin/bamfilternames usr/bin/bamfilterrefid usr/bin/bamfilterrg usr/bin/bamfixmateinformation usr/bin/bamfixpairinfo usr/bin/bamflagsplit usr/bin/bamindex usr/bin/bamintervalcomment usr/bin/bamintervalcommenthist usr/bin/bammapdist usr/bin/bammarkduplicates usr/bin/bammarkduplicates2 usr/bin/bammarkduplicatesopt usr/bin/bammaskflags usr/bin/bammdnm usr/bin/bammerge usr/bin/bamnumericalindex usr/bin/bamnumericalindexstats usr/bin/bamrank usr/bin/bamranksort usr/bin/bamrecalculatecigar usr/bin/bamrecompress usr/bin/bamrefextract usr/bin/bamrefinterval usr/bin/bamreheader usr/bin/bamreplacechecksums usr/bin/bamreset usr/bin/bamscrapcount usr/bin/bamseqchksum usr/bin/bamsormadup usr/bin/bamsort usr/bin/bamsplit usr/bin/bamsplitdiv usr/bin/bamstreamingmarkduplicates usr/bin/bamtofastq usr/bin/bamvalidate usr/bin/bamzztoname usr/bin/fastaexplod usr/bin/fastqtobam usr/bin/fastqtobam2 usr/bin/normalisefasta usr/bin/populaterefcache usr/share usr/share/doc usr/share/doc/biobambam2 usr/share/doc/biobambam2/README.md.gz usr/share/doc/biobambam2/README.test usr/share/doc/biobambam2/README.test-data usr/share/doc/biobambam2/changelog.Debian.gz usr/share/doc/biobambam2/copyright usr/share/doc/biobambam2/examples usr/share/doc/biobambam2/examples/README.test-data usr/share/doc/biobambam2/examples/SRR11728627.bam usr/share/doc/biobambam2/examples/SRR11728641.bam usr/share/doc/biobambam2/run-unit-test usr/share/man usr/share/man/man1 usr/share/man/man1/bam12auxmerge.1.gz usr/share/man/man1/bam12split.1.gz usr/share/man/man1/bam12strip.1.gz usr/share/man/man1/bamadapterclip.1.gz usr/share/man/man1/bamadapterfind.1.gz usr/share/man/man1/bamalignfrac.1.gz usr/share/man/man1/bamauxmerge.1.gz usr/share/man/man1/bamauxmerge2.1.gz usr/share/man/man1/bamauxsort.1.gz usr/share/man/man1/bambisect.1.gz usr/share/man/man1/bamcat.1.gz usr/share/man/man1/bamchecksort.1.gz usr/share/man/man1/bamclipXT.1.gz usr/share/man/man1/bamclipreinsert.1.gz usr/share/man/man1/bamcollate2.1.gz usr/share/man/man1/bamconsensus.1.gz usr/share/man/man1/bamdownsamplerandom.1.gz usr/share/man/man1/bamfeaturecount.1.gz usr/share/man/man1/bamfillquery.1.gz usr/share/man/man1/bamfilteraux.1.gz usr/share/man/man1/bamfilterflags.1.gz usr/share/man/man1/bamfilterheader.1.gz usr/share/man/man1/bamfilterheader2.1.gz usr/share/man/man1/bamfiltermc.1.gz usr/share/man/man1/bamfilterrg.1.gz usr/share/man/man1/bamfixmateinformation.1.gz usr/share/man/man1/bamflagsplit.1.gz usr/share/man/man1/bamindex.1.gz usr/share/man/man1/bamintervalcomment.1.gz usr/share/man/man1/bammarkduplicates.1.gz usr/share/man/man1/bammarkduplicates2.1.gz usr/share/man/man1/bammarkduplicatesopt.1.gz usr/share/man/man1/bammaskflags.1.gz usr/share/man/man1/bammdnm.1.gz usr/share/man/man1/bammerge.1.gz usr/share/man/man1/bamrank.1.gz usr/share/man/man1/bamranksort.1.gz usr/share/man/man1/bamrecalculatecigar.1.gz usr/share/man/man1/bamrecompress.1.gz usr/share/man/man1/bamreset.1.gz usr/share/man/man1/bamseqchksum.1.gz usr/share/man/man1/bamsormadup.1.gz usr/share/man/man1/bamsort.1.gz usr/share/man/man1/bamsplit.1.gz usr/share/man/man1/bamsplitdiv.1.gz usr/share/man/man1/bamstreamingmarkduplicates.1.gz usr/share/man/man1/bamtagconversion.1.gz usr/share/man/man1/bamtofastq.1.gz usr/share/man/man1/bamvalidate.1.gz usr/share/man/man1/bamzztoname.1.gz usr/share/man/man1/fastaexplod.1.gz usr/share/man/man1/fastqtobam.1.gz usr/share/man/man1/filtergtf.1.gz usr/share/man/man1/normalisefasta.1.gz usr/share/doc/biobambam2/README.gz