cnvkit (0.9.12-1build1)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- none
- Architecture
- amd64v3
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 94.7 kB
- Size expected
- 20.6 MB
- Size actual
- 20.6 MB
- Size match
Dependencies
Required package dependencies
Suggested packages
Recommended additional packages
- None
Description
Copy number variant detection from targeted DNA sequencing
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 19a9ad38…785a9ed0 | |
| SHA-1 | 44ea0986…120c032c | |
| SHA-256 | f5d49184…b7fb984c | |
| SHA-512 | 42604b94…fb2e44b1 |
Contents
Files and directories included
. usr usr/bin usr/bin/cnv_annotate.py usr/bin/cnv_expression_correlate.py usr/bin/cnv_updater.py usr/bin/cnvkit.py usr/bin/genome_instability_index.py usr/bin/guess_baits.py usr/bin/reference2targets.py usr/bin/skg_convert.py usr/bin/snpfilter.sh usr/lib usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/cnvkit-0.9.12.dist-info usr/lib/python3/dist-packages/cnvkit-0.9.12.dist-info/INSTALLER usr/lib/python3/dist-packages/cnvkit-0.9.12.dist-info/METADATA usr/lib/python3/dist-packages/cnvkit-0.9.12.dist-info/WHEEL usr/lib/python3/dist-packages/cnvkit-0.9.12.dist-info/entry_points.txt usr/lib/python3/dist-packages/cnvkit-0.9.12.dist-info/top_level.txt usr/lib/python3/dist-packages/cnvlib usr/lib/python3/dist-packages/cnvlib/__init__.py usr/lib/python3/dist-packages/cnvlib/_version.py usr/lib/python3/dist-packages/cnvlib/access.py usr/lib/python3/dist-packages/cnvlib/antitarget.py usr/lib/python3/dist-packages/cnvlib/autobin.py usr/lib/python3/dist-packages/cnvlib/batch.py usr/lib/python3/dist-packages/cnvlib/bintest.py usr/lib/python3/dist-packages/cnvlib/call.py usr/lib/python3/dist-packages/cnvlib/cluster.py usr/lib/python3/dist-packages/cnvlib/cmdutil.py usr/lib/python3/dist-packages/cnvlib/cnary.py usr/lib/python3/dist-packages/cnvlib/cnvkit.py usr/lib/python3/dist-packages/cnvlib/commands.py usr/lib/python3/dist-packages/cnvlib/core.py usr/lib/python3/dist-packages/cnvlib/coverage.py usr/lib/python3/dist-packages/cnvlib/descriptives.py usr/lib/python3/dist-packages/cnvlib/diagram.py usr/lib/python3/dist-packages/cnvlib/export.py usr/lib/python3/dist-packages/cnvlib/fix.py usr/lib/python3/dist-packages/cnvlib/heatmap.py usr/lib/python3/dist-packages/cnvlib/import_rna.py usr/lib/python3/dist-packages/cnvlib/importers.py usr/lib/python3/dist-packages/cnvlib/metrics.py usr/lib/python3/dist-packages/cnvlib/parallel.py usr/lib/python3/dist-packages/cnvlib/params.py usr/lib/python3/dist-packages/cnvlib/plots.py usr/lib/python3/dist-packages/cnvlib/reference.py usr/lib/python3/dist-packages/cnvlib/reports.py usr/lib/python3/dist-packages/cnvlib/rna.py usr/lib/python3/dist-packages/cnvlib/samutil.py usr/lib/python3/dist-packages/cnvlib/scatter.py usr/lib/python3/dist-packages/cnvlib/segfilters.py usr/lib/python3/dist-packages/cnvlib/segmentation usr/lib/python3/dist-packages/cnvlib/segmentation/__init__.py usr/lib/python3/dist-packages/cnvlib/segmentation/cbs.py usr/lib/python3/dist-packages/cnvlib/segmentation/flasso.py usr/lib/python3/dist-packages/cnvlib/segmentation/haar.py usr/lib/python3/dist-packages/cnvlib/segmentation/hmm.py usr/lib/python3/dist-packages/cnvlib/segmentation/none.py usr/lib/python3/dist-packages/cnvlib/segmetrics.py usr/lib/python3/dist-packages/cnvlib/smoothing.py usr/lib/python3/dist-packages/cnvlib/target.py usr/lib/python3/dist-packages/cnvlib/vary.py usr/lib/python3/dist-packages/skgenome usr/lib/python3/dist-packages/skgenome/__init__.py usr/lib/python3/dist-packages/skgenome/chromsort.py usr/lib/python3/dist-packages/skgenome/combiners.py usr/lib/python3/dist-packages/skgenome/gary.py usr/lib/python3/dist-packages/skgenome/intersect.py usr/lib/python3/dist-packages/skgenome/merge.py usr/lib/python3/dist-packages/skgenome/rangelabel.py usr/lib/python3/dist-packages/skgenome/subdivide.py usr/lib/python3/dist-packages/skgenome/subtract.py usr/lib/python3/dist-packages/skgenome/tabio usr/lib/python3/dist-packages/skgenome/tabio/__init__.py usr/lib/python3/dist-packages/skgenome/tabio/bedio.py usr/lib/python3/dist-packages/skgenome/tabio/genepred.py usr/lib/python3/dist-packages/skgenome/tabio/gff.py usr/lib/python3/dist-packages/skgenome/tabio/picard.py usr/lib/python3/dist-packages/skgenome/tabio/seg.py usr/lib/python3/dist-packages/skgenome/tabio/seqdict.py usr/lib/python3/dist-packages/skgenome/tabio/tab.py usr/lib/python3/dist-packages/skgenome/tabio/textcoord.py usr/lib/python3/dist-packages/skgenome/tabio/util.py usr/lib/python3/dist-packages/skgenome/tabio/vcfio.py usr/lib/python3/dist-packages/skgenome/tabio/vcfsimple.py usr/share usr/share/doc usr/share/doc/cnvkit usr/share/doc/cnvkit/NEWS.Debian.gz usr/share/doc/cnvkit/changelog.Debian.gz usr/share/doc/cnvkit/copyright usr/share/doc/cnvkit/examples usr/share/doc/cnvkit/examples/data usr/share/doc/cnvkit/examples/data/access-10kb.hg19.bed usr/share/doc/cnvkit/examples/data/access-10kb.hg38.bed usr/share/doc/cnvkit/examples/data/access-5k-mappable.grch37.bed usr/share/doc/cnvkit/examples/data/access-5k-mappable.hg19.bed usr/share/doc/cnvkit/examples/data/ensembl-gene-info.hg38.tsv usr/share/doc/cnvkit/examples/data/interval-exome.antitarget-9-90kb.bed usr/share/doc/cnvkit/examples/data/interval-exome.target-267.bed usr/share/doc/cnvkit/examples/data/interval-nv2.antitarget-15-150kb.bed usr/share/doc/cnvkit/examples/data/interval-nv2.target-267.bed usr/share/doc/cnvkit/examples/data/refFlat_hg38.txt usr/share/doc/cnvkit/examples/data/tcga-skcm.cnv-expr-corr.tsv usr/share/doc/cnvkit/examples/test usr/share/doc/cnvkit/examples/test/.coveragerc usr/share/doc/cnvkit/examples/test/Makefile usr/share/doc/cnvkit/examples/test/bintest.makefile usr/share/doc/cnvkit/examples/test/clustering.makefile usr/share/doc/cnvkit/examples/test/conftest.py usr/share/doc/cnvkit/examples/test/formats usr/share/doc/cnvkit/examples/test/formats/GRCh37_BRAF.gff.gz usr/share/doc/cnvkit/examples/test/formats/acgh-log10.seg usr/share/doc/cnvkit/examples/test/formats/agilent.bed usr/share/doc/cnvkit/examples/test/formats/amplicon.bed usr/share/doc/cnvkit/examples/test/formats/amplicon.cnr usr/share/doc/cnvkit/examples/test/formats/amplicon.cns usr/share/doc/cnvkit/examples/test/formats/amplicon.text usr/share/doc/cnvkit/examples/test/formats/baits-funky.bed usr/share/doc/cnvkit/examples/test/formats/blank.vcf usr/share/doc/cnvkit/examples/test/formats/chrM-Y-trunc.hg19.fa usr/share/doc/cnvkit/examples/test/formats/cl_seq.cns usr/share/doc/cnvkit/examples/test/formats/cw-tr-log2.seg usr/share/doc/cnvkit/examples/test/formats/dac-my.bed usr/share/doc/cnvkit/examples/test/formats/empty usr/share/doc/cnvkit/examples/test/formats/example.gff usr/share/doc/cnvkit/examples/test/formats/f-on-f.cns usr/share/doc/cnvkit/examples/test/formats/f-on-m.cns usr/share/doc/cnvkit/examples/test/formats/female01.antitargetcoverage.cnn usr/share/doc/cnvkit/examples/test/formats/female01.targetcoverage.cnn usr/share/doc/cnvkit/examples/test/formats/female02.antitargetcoverage.cnn usr/share/doc/cnvkit/examples/test/formats/female02.targetcoverage.cnn usr/share/doc/cnvkit/examples/test/formats/gatk-emptyalt.vcf usr/share/doc/cnvkit/examples/test/formats/m-on-f.cns usr/share/doc/cnvkit/examples/test/formats/m-on-m.cns usr/share/doc/cnvkit/examples/test/formats/male01.antitargetcoverage.cnn usr/share/doc/cnvkit/examples/test/formats/male01.targetcoverage.cnn usr/share/doc/cnvkit/examples/test/formats/male02.antitargetcoverage.cnn usr/share/doc/cnvkit/examples/test/formats/male02.targetcoverage.cnn usr/share/doc/cnvkit/examples/test/formats/my-refflat.bed usr/share/doc/cnvkit/examples/test/formats/my-targets.bed usr/share/doc/cnvkit/examples/test/formats/na12878-chrM-Y-trunc.bam usr/share/doc/cnvkit/examples/test/formats/na12878_na12882_mix.vcf usr/share/doc/cnvkit/examples/test/formats/nosample.vcf usr/share/doc/cnvkit/examples/test/formats/nv2_baits.interval_list usr/share/doc/cnvkit/examples/test/formats/nv3.cns usr/share/doc/cnvkit/examples/test/formats/nv3.n3.results usr/share/doc/cnvkit/examples/test/formats/p2-20_1.cnr usr/share/doc/cnvkit/examples/test/formats/p2-20_2.cnr usr/share/doc/cnvkit/examples/test/formats/par-reference.grch38.cnn usr/share/doc/cnvkit/examples/test/formats/ref_test_female.cnn usr/share/doc/cnvkit/examples/test/formats/ref_test_male.cnn usr/share/doc/cnvkit/examples/test/formats/reference-tr.cnn usr/share/doc/cnvkit/examples/test/formats/refflat-mini.txt usr/share/doc/cnvkit/examples/test/formats/tr95t.cns usr/share/doc/cnvkit/examples/test/formats/tr95t.segmetrics.cns usr/share/doc/cnvkit/examples/test/formats/warning.seg usr/share/doc/cnvkit/examples/test/formats/wgs-chr17.cnr usr/share/doc/cnvkit/examples/test/picard usr/share/doc/cnvkit/examples/test/picard/p1-21_1.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p1-21_1.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p1-21_2.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p1-21_2.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p1-21_3.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p1-21_3.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p1-21_4.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p1-21_4.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p1-21_5.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p1-21_5.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-20_1.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-20_1.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-20_2.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-20_2.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-20_3.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-20_3.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-20_4.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-20_4.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-20_5.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-20_5.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-5_1.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-5_1.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-5_2.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-5_2.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-5_5.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-5_5.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-9_1.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-9_1.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-9_2.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-9_2.targetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-9_5.antitargetcoverage.csv usr/share/doc/cnvkit/examples/test/picard/p2-9_5.targetcoverage.csv usr/share/doc/cnvkit/examples/test/regions.bed usr/share/doc/cnvkit/examples/test/test_cnvlib.py usr/share/doc/cnvkit/examples/test/test_commands.py usr/share/doc/cnvkit/examples/test/test_genome.py usr/share/doc/cnvkit/examples/test/test_io.py usr/share/doc/cnvkit/examples/test/test_r.py usr/share/lintian usr/share/lintian/overrides usr/share/lintian/overrides/cnvkit usr/share/man usr/share/man/man1 usr/share/man/man1/cnvkit-access.1.gz usr/share/man/man1/cnvkit-antitarget.1.gz usr/share/man/man1/cnvkit-autobin.1.gz usr/share/man/man1/cnvkit-batch.1.gz usr/share/man/man1/cnvkit-bintest.1.gz usr/share/man/man1/cnvkit-breaks.1.gz usr/share/man/man1/cnvkit-call.1.gz usr/share/man/man1/cnvkit-coverage.1.gz usr/share/man/man1/cnvkit-diagram.1.gz usr/share/man/man1/cnvkit-export.1.gz usr/share/man/man1/cnvkit-fix.1.gz usr/share/man/man1/cnvkit-genemetrics.1.gz usr/share/man/man1/cnvkit-heatmap.1.gz usr/share/man/man1/cnvkit-import-picard.1.gz usr/share/man/man1/cnvkit-import-rna.1.gz usr/share/man/man1/cnvkit-import-seg.1.gz usr/share/man/man1/cnvkit-import-theta.1.gz usr/share/man/man1/cnvkit-metrics.1.gz usr/share/man/man1/cnvkit-reference.1.gz usr/share/man/man1/cnvkit-scatter.1.gz usr/share/man/man1/cnvkit-segment.1.gz usr/share/man/man1/cnvkit-segmetrics.1.gz usr/share/man/man1/cnvkit-sex.1.gz usr/share/man/man1/cnvkit-target.1.gz usr/share/man/py usr/share/man/py/man1 usr/share/man/py/man1/cnv_annotate.1.gz usr/share/man/py/man1/cnv_expression_correlate.1.gz usr/share/man/py/man1/cnvkit.1.gz