coot (1.1.18+dfsg-4ubuntu1)

Details

Core information at a glance

Distribution: ubuntu
Origin: ubuntu-stonking
Repository: https://nl.archive.ubuntu.com/ubuntu
Codename: stonking
Component: universe
Source: none
Architecture: amd64v3
Section: universe/science
Priority: optional
Maintainer: Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size: 29.7 kB
Size expected: 9.1 MB
Size actual: 9.1 MB
Size match

Dependencies

Required package dependencies

coot-data
gir1.2-gtk-4.0
python3-gi
python3-rdkit
refmac-dictionary
python3 (<< 3.15)
python3 (>= 3.14~)
python3:any
libasound2t64 (>= 1.0.16)
libblas3 | libblas.so.3
libboost-python1.90.0 (>= 1.90.0)
libboost-python1.90.0-py314
libc6 (>= 2.43)
libcairo2 (>= 1.6.0)
libclipper2 (>= 2.1.20201109)
libcootapi1.1 (>= 1.1.18+dfsg)
libcurl3t64-gnutls (>= 7.16.2)
libepoxy0 (>= 1.3)
libfreetype6 (>= 2.2.1)
libgcc-s1 (>= 4.0)
libgdk-pixbuf-2.0-0 (>= 2.31.1)
libglib2.0-0t64 (>= 2.80.0)
libgomp1 (>= 6)
libgraphene-1.0-0 (>= 1.5.4)
libgsl28 (>= 2.8+dfsg)
libgtk-4-1 (>= 4.13.8)
libmmdb2-0 (>= 2.0.22)
libpango-1.0-0 (>= 1.14.0)
libpangocairo-1.0-0 (>= 1.14.0)
libpng16-16t64 (>= 1.6.46)
libpython3.14 (>= 3.14.1)
librdkit1t64 (>= 202503.6)
libsqlite3-0 (>= 3.5.9)
libssm2 (>= 1.4.0)
libstdc++6 (>= 14)
libvorbisfile3 (>= 1.1.2)
sfftw2 (>= 2.1.5)
zlib1g (>= 1:1.2.6)

Suggested packages

Recommended additional packages

coot-doc

Description

model building program for macromolecular crystallography

Homepage Download .deb

Checksums

Hash values and integrity verification status

Type	Expected	Actual
MD5	697c3919…9b97ce62	697c3919…9b97ce62
SHA-1	eb03aadf…9f333d81	eb03aadf…9f333d81
SHA-256	28472e44…9a5576a2	28472e44…9a5576a2
SHA-512	5e7ee0f8…045feae7	5e7ee0f8…045feae7

Files and directories included

.
usr
usr/bin
usr/bin/coot
usr/bin/coot-bfactan
usr/bin/coot-density-score-by-residue
usr/bin/coot-findligand
usr/bin/coot-findwaters
usr/bin/coot-identify-protein
usr/bin/coot-ligand-validation
usr/bin/coot-mini-rsr
usr/bin/coot-mmrrcc
usr/bin/layla
usr/bin/pyrogen
usr/lib
usr/lib/python3
usr/lib/python3/dist-packages
usr/lib/python3/dist-packages/_coot.cpython-314-x86_64-linux-gnu.so
usr/lib/python3/dist-packages/_pyrogen_swig.cpython-314-x86_64-linux-gnu.so
usr/lib/python3/dist-packages/coot
usr/lib/python3/dist-packages/coot/add_linked_cho.py
usr/lib/python3/dist-packages/coot/americanisms.py
usr/lib/python3/dist-packages/coot/atom_types.py
usr/lib/python3/dist-packages/coot/background_demo.py
usr/lib/python3/dist-packages/coot/bones_reader.py
usr/lib/python3/dist-packages/coot/brute_lsqman.py
usr/lib/python3/dist-packages/coot/check_for_updates.py
usr/lib/python3/dist-packages/coot/cho_restraints_from_models.py
usr/lib/python3/dist-packages/coot/clear_backup.py
usr/lib/python3/dist-packages/coot/cns2coot.py
usr/lib/python3/dist-packages/coot/coot_acedrg_link.py
usr/lib/python3/dist-packages/coot/coot_chemical_feature_clusters.py
usr/lib/python3/dist-packages/coot/coot_contact_score_isolated_ligand.py
usr/lib/python3/dist-packages/coot/coot_find_baddies.py
usr/lib/python3/dist-packages/coot/coot_fitting.py
usr/lib/python3/dist-packages/coot/coot_generator_3d_import.py
usr/lib/python3/dist-packages/coot/coot_git.py
usr/lib/python3/dist-packages/coot/coot_gui.py
usr/lib/python3/dist-packages/coot/coot_hole.py
usr/lib/python3/dist-packages/coot/coot_ligand_check.py
usr/lib/python3/dist-packages/coot/coot_load_modules.py
usr/lib/python3/dist-packages/coot/coot_lsq.py
usr/lib/python3/dist-packages/coot/coot_ncs.py
usr/lib/python3/dist-packages/coot/coot_output_to_window.py
usr/lib/python3/dist-packages/coot/coot_redefine_functions.py
usr/lib/python3/dist-packages/coot/coot_res_spec_utils.py
usr/lib/python3/dist-packages/coot/coot_sharpen_blur.py
usr/lib/python3/dist-packages/coot/coot_testing_utils.py
usr/lib/python3/dist-packages/coot/coot_toolbuttons.py
usr/lib/python3/dist-packages/coot/coot_utils.py
usr/lib/python3/dist-packages/coot/create_server.py
usr/lib/python3/dist-packages/coot/dictionary_generators.py
usr/lib/python3/dist-packages/coot/enhanced_ligand.py
usr/lib/python3/dist-packages/coot/extensions.py
usr/lib/python3/dist-packages/coot/filter.py
usr/lib/python3/dist-packages/coot/gap.py
usr/lib/python3/dist-packages/coot/generic_objects.py
usr/lib/python3/dist-packages/coot/get_ebi.py
usr/lib/python3/dist-packages/coot/get_recent_pdbe.py
usr/lib/python3/dist-packages/coot/group_settings.py
usr/lib/python3/dist-packages/coot/gui_add_linked_cho.py
usr/lib/python3/dist-packages/coot/gui_contact_score_isolated_ligand.py
usr/lib/python3/dist-packages/coot/gui_hole.py
usr/lib/python3/dist-packages/coot/gui_ligand_sliders.py
usr/lib/python3/dist-packages/coot/gui_prosmart.py
usr/lib/python3/dist-packages/coot/hello.py
usr/lib/python3/dist-packages/coot/interactive_nudge_residues.py
usr/lib/python3/dist-packages/coot/jay_util.py
usr/lib/python3/dist-packages/coot/jligand.py
usr/lib/python3/dist-packages/coot/jligand_gui.py
usr/lib/python3/dist-packages/coot/libcheck.py
usr/lib/python3/dist-packages/coot/ligand_validation_sliders.py
usr/lib/python3/dist-packages/coot/local_code.py
usr/lib/python3/dist-packages/coot/mutate.py
usr/lib/python3/dist-packages/coot/parse_pisa_xml.py
usr/lib/python3/dist-packages/coot/pathology_plots.py
usr/lib/python3/dist-packages/coot/pdbe_validation_data.py
usr/lib/python3/dist-packages/coot/point_group_symmetry.py
usr/lib/python3/dist-packages/coot/populate_python_menus.py
usr/lib/python3/dist-packages/coot/povray.py
usr/lib/python3/dist-packages/coot/pyrogen.py
usr/lib/python3/dist-packages/coot/pyrogen_swig.py
usr/lib/python3/dist-packages/coot/python_coot_docs.py
usr/lib/python3/dist-packages/coot/raster3d.py
usr/lib/python3/dist-packages/coot/rcrane_loader.py
usr/lib/python3/dist-packages/coot/refine.py
usr/lib/python3/dist-packages/coot/refmac.py
usr/lib/python3/dist-packages/coot/remote_control.py
usr/lib/python3/dist-packages/coot/run_mogul.py
usr/lib/python3/dist-packages/coot/shelx.py
usr/lib/python3/dist-packages/coot/shelx_extensions.py
usr/lib/python3/dist-packages/coot/tautomer.py
usr/lib/python3/dist-packages/coot/template_key_bindings.py
usr/lib/python3/dist-packages/coot/tips.py
usr/lib/python3/dist-packages/coot/tips_gui.py
usr/lib/python3/dist-packages/coot/user_define_restraints.py
usr/lib/python3/dist-packages/coot/what_check.py
usr/lib/python3/dist-packages/coot.pth
usr/lib/python3/dist-packages/coot.py
usr/lib/python3/dist-packages/coot_headless_api.cpython-314-x86_64-linux-gnu.so
usr/lib/python3/dist-packages/pyrogen_boost.cpython-314-x86_64-linux-gnu.so
usr/lib/x86_64-linux-gnu
usr/lib/x86_64-linux-gnu/coot
usr/lib/x86_64-linux-gnu/coot/libMoleculesToTrianglesCXXClasses.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libMoleculesToTrianglesCXXSurface.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libccp4mg-utils.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-AngleInfo.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-analysis.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-api.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-cabuild.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-compat.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-coord-extras.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-coord-utils.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-coords.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-db-main.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-geometry.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-high-res.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-ideal.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-isosurface.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-layla.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-lidia-core.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-ligand.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-map-heavy.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-map-utils.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-mini-mol.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-pli.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-protein-db.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-res-tracer.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-skeleton.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-utils.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot-validation-graphs.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcoot_py_restraints.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcootaneer.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcootilus.so.0.0.0
usr/lib/x86_64-linux-gnu/coot/libcootsumo.so.0.0.0
usr/lib/x86_64-linux-gnu/pkgconfig
usr/lib/x86_64-linux-gnu/pkgconfig/MoleculesToTrianglesCXXClasses.pc
usr/libexec
usr/libexec/coot-1
usr/libexec/coot-density-score-by-residue-bin
usr/libexec/coot-findligand-bin
usr/libexec/coot-findwaters-bin
usr/libexec/coot-identify-protein-bin
usr/libexec/coot-ligand-validation-bin
usr/libexec/coot-make-ligands-db
usr/libexec/layla
usr/libexec/layla-bin
usr/libexec/mini-rsr-bin
usr/share
usr/share/applications
usr/share/applications/coot.desktop
usr/share/doc
usr/share/doc/coot
usr/share/doc/coot/RELEASE-NOTES.gz
usr/share/doc/coot/copyright
usr/share/icons
usr/share/icons/hicolor
usr/share/icons/hicolor/22x22
usr/share/icons/hicolor/22x22/apps
usr/share/icons/hicolor/22x22/apps/coot.png
usr/share/icons/hicolor/24x24
usr/share/icons/hicolor/24x24/apps
usr/share/icons/hicolor/24x24/apps/coot.png
usr/share/icons/hicolor/256x256
usr/share/icons/hicolor/256x256/apps
usr/share/icons/hicolor/256x256/apps/coot.png
usr/share/icons/hicolor/32x32
usr/share/icons/hicolor/32x32/apps
usr/share/icons/hicolor/32x32/apps/coot.png
usr/share/icons/hicolor/48x48
usr/share/icons/hicolor/48x48/apps
usr/share/icons/hicolor/48x48/apps/coot.png
usr/share/icons/hicolor/64x64
usr/share/icons/hicolor/64x64/apps
usr/share/icons/hicolor/64x64/apps/coot.png
usr/share/icons/hicolor/96x96
usr/share/icons/hicolor/96x96/apps
usr/share/icons/hicolor/96x96/apps/coot.png
usr/share/icons/hicolor/scalable
usr/share/icons/hicolor/scalable/actions
usr/share/icons/hicolor/scalable/actions/Stock-dialog-information.svg
usr/share/icons/hicolor/scalable/actions/Stock-dialog-warning.svg
usr/share/icons/hicolor/scalable/apps
usr/share/icons/hicolor/scalable/apps/coot-layla.svg
usr/share/icons/hicolor/scalable/apps/coot.svg
usr/share/man
usr/share/man/man1
usr/share/man/man1/coot-available-comp-id.1.gz
usr/share/man/man1/coot-bfactan.1.gz
usr/share/man/man1/coot-compare-dictionaries.1.gz
usr/share/man/man1/coot-density-score-by-residue.1.gz
usr/share/man/man1/coot-fix-nomenclature-errors.1.gz
usr/share/man/man1/coot-identify-protein.1.gz
usr/share/man/man1/coot-make-shelx-restraints.1.gz
usr/share/man/man1/coot-mini-rsr.1.gz
usr/share/man/man1/coot.1.gz
usr/share/man/man1/density-score-by-residue.1.gz
usr/share/man/man1/findligand.1.gz
usr/share/man/man1/findwaters.1.gz
usr/share/man/man1/fix-nomenclature-errors.1.gz
usr/share/man/man1/layla.1.gz
usr/share/man/man1/lidia.1.gz
usr/share/man/man1/pyrogen.1.gz
usr/share/metainfo
usr/share/metainfo/coot.appdata.xml
usr/lib/x86_64-linux-gnu/coot/libMoleculesToTrianglesCXXClasses.so
usr/lib/x86_64-linux-gnu/coot/libMoleculesToTrianglesCXXClasses.so.0
usr/lib/x86_64-linux-gnu/coot/libMoleculesToTrianglesCXXSurface.so
usr/lib/x86_64-linux-gnu/coot/libMoleculesToTrianglesCXXSurface.so.0
usr/lib/x86_64-linux-gnu/coot/libccp4mg-utils.so
usr/lib/x86_64-linux-gnu/coot/libccp4mg-utils.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-AngleInfo.so
usr/lib/x86_64-linux-gnu/coot/libcoot-AngleInfo.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-analysis.so
usr/lib/x86_64-linux-gnu/coot/libcoot-analysis.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-api.so
usr/lib/x86_64-linux-gnu/coot/libcoot-api.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-cabuild.so
usr/lib/x86_64-linux-gnu/coot/libcoot-cabuild.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-compat.so
usr/lib/x86_64-linux-gnu/coot/libcoot-compat.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-coord-extras.so
usr/lib/x86_64-linux-gnu/coot/libcoot-coord-extras.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-coord-utils.so
usr/lib/x86_64-linux-gnu/coot/libcoot-coord-utils.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-coords.so
usr/lib/x86_64-linux-gnu/coot/libcoot-coords.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-db-main.so
usr/lib/x86_64-linux-gnu/coot/libcoot-db-main.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-geometry.so
usr/lib/x86_64-linux-gnu/coot/libcoot-geometry.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-high-res.so
usr/lib/x86_64-linux-gnu/coot/libcoot-high-res.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-ideal.so
usr/lib/x86_64-linux-gnu/coot/libcoot-ideal.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-isosurface.so
usr/lib/x86_64-linux-gnu/coot/libcoot-isosurface.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-layla.so
usr/lib/x86_64-linux-gnu/coot/libcoot-layla.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-lidia-core.so
usr/lib/x86_64-linux-gnu/coot/libcoot-lidia-core.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-ligand.so
usr/lib/x86_64-linux-gnu/coot/libcoot-ligand.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-map-heavy.so
usr/lib/x86_64-linux-gnu/coot/libcoot-map-heavy.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-map-utils.so
usr/lib/x86_64-linux-gnu/coot/libcoot-map-utils.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-mini-mol.so
usr/lib/x86_64-linux-gnu/coot/libcoot-mini-mol.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-pli.so
usr/lib/x86_64-linux-gnu/coot/libcoot-pli.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-protein-db.so
usr/lib/x86_64-linux-gnu/coot/libcoot-protein-db.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-res-tracer.so
usr/lib/x86_64-linux-gnu/coot/libcoot-res-tracer.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-skeleton.so
usr/lib/x86_64-linux-gnu/coot/libcoot-skeleton.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-utils.so
usr/lib/x86_64-linux-gnu/coot/libcoot-utils.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot-validation-graphs.so
usr/lib/x86_64-linux-gnu/coot/libcoot-validation-graphs.so.0
usr/lib/x86_64-linux-gnu/coot/libcoot_py_restraints.so
usr/lib/x86_64-linux-gnu/coot/libcoot_py_restraints.so.0
usr/lib/x86_64-linux-gnu/coot/libcootaneer.so
usr/lib/x86_64-linux-gnu/coot/libcootaneer.so.0
usr/lib/x86_64-linux-gnu/coot/libcootilus.so
usr/lib/x86_64-linux-gnu/coot/libcootilus.so.0
usr/lib/x86_64-linux-gnu/coot/libcootsumo.so
usr/lib/x86_64-linux-gnu/coot/libcootsumo.so.0
usr/share/doc/coot/changelog.Debian.gz