flye (2.9.6+dfsg-2)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- none
- Architecture
- amd64v3
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 36.5 kB
- Size expected
- 23.3 MB
- Size actual
- 23.3 MB
- Size match
Dependencies
Required package dependencies
Suggested packages
Recommended additional packages
- None
Description
de novo assembler for single molecule sequencing reads using repeat graphs
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 26dca8f9…8c711ef4 | |
| SHA-1 | 2827b73d…cc2bd8ea | |
| SHA-256 | 97c57251…37f41065 | |
| SHA-512 | 3502dada…294f2509 |
Contents
Files and directories included
. usr usr/bin usr/bin/flye usr/bin/flye-modules usr/lib usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/flye usr/lib/python3/dist-packages/flye/__build__.py usr/lib/python3/dist-packages/flye/__init__.py usr/lib/python3/dist-packages/flye/__version__.py usr/lib/python3/dist-packages/flye/assembly usr/lib/python3/dist-packages/flye/assembly/__init__.py usr/lib/python3/dist-packages/flye/assembly/assemble.py usr/lib/python3/dist-packages/flye/assembly/repeat_graph.py usr/lib/python3/dist-packages/flye/assembly/scaffolder.py usr/lib/python3/dist-packages/flye/config usr/lib/python3/dist-packages/flye/config/__init__.py usr/lib/python3/dist-packages/flye/config/bin_cfg usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_corrected_reads.cfg usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_defaults.cfg usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_hifi.cfg usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_nano_hq.cfg usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_raw_reads.cfg usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_subasm.cfg usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_g36_homopolymers.mat usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_g36_substitutions.mat usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_homopolymers.mat usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_substitutions.mat usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_chm13_homopolymers.mat usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_chm13_substitutions.mat usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_homopolymers.mat usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_substitutions.mat usr/lib/python3/dist-packages/flye/config/configurator.py usr/lib/python3/dist-packages/flye/config/py_cfg.py usr/lib/python3/dist-packages/flye/main.py usr/lib/python3/dist-packages/flye/polishing usr/lib/python3/dist-packages/flye/polishing/__init__.py usr/lib/python3/dist-packages/flye/polishing/alignment.py usr/lib/python3/dist-packages/flye/polishing/bubbles.py usr/lib/python3/dist-packages/flye/polishing/consensus.py usr/lib/python3/dist-packages/flye/polishing/polish.py usr/lib/python3/dist-packages/flye/repeat_graph usr/lib/python3/dist-packages/flye/repeat_graph/__init__.py usr/lib/python3/dist-packages/flye/repeat_graph/graph_alignment.py usr/lib/python3/dist-packages/flye/repeat_graph/repeat_graph.py usr/lib/python3/dist-packages/flye/short_plasmids usr/lib/python3/dist-packages/flye/short_plasmids/__init__.py usr/lib/python3/dist-packages/flye/short_plasmids/circular_sequences.py usr/lib/python3/dist-packages/flye/short_plasmids/plasmids.py usr/lib/python3/dist-packages/flye/short_plasmids/unmapped_reads.py usr/lib/python3/dist-packages/flye/short_plasmids/utils.py usr/lib/python3/dist-packages/flye/tests usr/lib/python3/dist-packages/flye/tests/__init__.py usr/lib/python3/dist-packages/flye/tests/data usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb.fasta usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb_reads.fastq.gz usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz usr/lib/python3/dist-packages/flye/tests/test_toy.py usr/lib/python3/dist-packages/flye/trestle usr/lib/python3/dist-packages/flye/trestle/__init__.py usr/lib/python3/dist-packages/flye/trestle/divergence.py usr/lib/python3/dist-packages/flye/trestle/graph_resolver.py usr/lib/python3/dist-packages/flye/trestle/trestle.py usr/lib/python3/dist-packages/flye/trestle/trestle_config.py usr/lib/python3/dist-packages/flye/utils usr/lib/python3/dist-packages/flye/utils/__init__.py usr/lib/python3/dist-packages/flye/utils/bytes2human.py usr/lib/python3/dist-packages/flye/utils/fasta_parser.py usr/lib/python3/dist-packages/flye/utils/sam_parser.py usr/lib/python3/dist-packages/flye/utils/utils.py usr/lib/python3/dist-packages/flye-2.9.6.egg-info usr/lib/python3/dist-packages/flye-2.9.6.egg-info/PKG-INFO usr/lib/python3/dist-packages/flye-2.9.6.egg-info/dependency_links.txt usr/lib/python3/dist-packages/flye-2.9.6.egg-info/entry_points.txt usr/lib/python3/dist-packages/flye-2.9.6.egg-info/top_level.txt usr/share usr/share/doc usr/share/doc/flye usr/share/doc/flye/FAQ.md.gz usr/share/doc/flye/README.md.gz usr/share/doc/flye/USAGE.md.gz usr/share/doc/flye/changelog.Debian.gz usr/share/doc/flye/copyright usr/share/doc/flye/graph_example.png usr/share/man usr/share/man/man1 usr/share/man/man1/flye.1.gz usr/share/man/man1/flye-modules.1.gz