ivar (1.4.3+dfsg-2ubuntu2)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- none
- Architecture
- amd64v3
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 1.5 kB
- Size expected
- 242.7 kB
- Size actual
- 242.7 kB
- Size match
Dependencies
Required package dependencies
Suggested packages
Recommended additional packages
- None
Description
functions broadly useful for viral amplicon-based sequencing
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | ad3d21d2…35ba8f64 | |
| SHA-1 | 18162468…908a4b98 | |
| SHA-256 | 87f79e75…2e99e8bd | |
| SHA-512 | 41f3df5d…ac37dcb0 |
Contents
Files and directories included
. usr usr/bin usr/bin/ivar usr/share usr/share/doc usr/share/doc/ivar usr/share/doc/ivar/COOKBOOK.md usr/share/doc/ivar/MANUAL.md.gz usr/share/doc/ivar/README usr/share/doc/ivar/README.md.gz usr/share/doc/ivar/README.test usr/share/doc/ivar/README.test_data usr/share/doc/ivar/changelog.Debian.gz usr/share/doc/ivar/copyright usr/share/doc/ivar/examples usr/share/doc/ivar/examples/data usr/share/doc/ivar/examples/data/db usr/share/doc/ivar/examples/data/db/test_ref.fa usr/share/doc/ivar/examples/data/db/test_ref.fa.fai usr/share/doc/ivar/examples/data/pair_info_2.tsv usr/share/doc/ivar/examples/data/pair_information.tsv usr/share/doc/ivar/examples/data/primer_only usr/share/doc/ivar/examples/data/primer_only/primer_edge_cases.bam usr/share/doc/ivar/examples/data/primer_only/primer_edge_cases.bam.bai usr/share/doc/ivar/examples/data/primer_pair_test usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair_trim.tsv usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair_trim.untrimmed.bam usr/share/doc/ivar/examples/data/test.bed usr/share/doc/ivar/examples/data/test.filtered.tsv usr/share/doc/ivar/examples/data/test.gap.fa usr/share/doc/ivar/examples/data/test.gap.qual.txt usr/share/doc/ivar/examples/data/test.gap.sorted.bam usr/share/doc/ivar/examples/data/test.gap.sorted.bam.bai usr/share/doc/ivar/examples/data/test.gap.sorted.mpileup usr/share/doc/ivar/examples/data/test.gff usr/share/doc/ivar/examples/data/test.indel.mpileup usr/share/doc/ivar/examples/data/test.indel.tsv usr/share/doc/ivar/examples/data/test.indel2.tsv usr/share/doc/ivar/examples/data/test.indel3.tsv usr/share/doc/ivar/examples/data/test.indel4.tsv usr/share/doc/ivar/examples/data/test.masked_primer_indices.txt usr/share/doc/ivar/examples/data/test.sim.merged.sorted.bam usr/share/doc/ivar/examples/data/test.sim.merged.sorted.bam.bai usr/share/doc/ivar/examples/data/test.sorted.bam usr/share/doc/ivar/examples/data/test.sorted.bam.bai usr/share/doc/ivar/examples/data/test.strand.pileup usr/share/doc/ivar/examples/data/test.trimmed.masked.bam usr/share/doc/ivar/examples/data/test.trimmed.masked.bam.bai usr/share/doc/ivar/examples/data/test.trimmed.sorted.bam usr/share/doc/ivar/examples/data/test.trimmed.sorted.bam.bai usr/share/doc/ivar/examples/data/test.unmapped.sorted.bam usr/share/doc/ivar/examples/data/test.unmapped.sorted.bam.bai usr/share/doc/ivar/examples/data/test_amplicon.sorted.bam usr/share/doc/ivar/examples/data/test_isize.bed usr/share/doc/ivar/examples/data/test_isize.sorted.bam usr/share/doc/ivar/examples/data/test_merged.bed usr/share/doc/ivar/examples/data/test_strand.gff usr/share/doc/ivar/examples/data/test_strand.tsv usr/share/doc/ivar/examples/data/test_unpaired.sorted.bam usr/share/doc/ivar/examples/data/test_unpaired.sorted.bam.bai usr/share/doc/ivar/examples/data/trim_isize.bam usr/share/doc/ivar/examples/ref usr/share/doc/ivar/examples/ref/README.test_data usr/share/doc/ivar/examples/ref/out-consensus.fa usr/share/doc/ivar/examples/ref/out-consensus.qual.txt usr/share/doc/ivar/examples/ref/out-filtered.tsv usr/share/doc/ivar/examples/ref/out-getmasked.txt usr/share/doc/ivar/examples/ref/out-removereads.sam usr/share/doc/ivar/examples/ref/out-trim.sam usr/share/doc/ivar/examples/ref/out-trim2.sam usr/share/doc/ivar/examples/ref/out-variants.tsv usr/share/doc/ivar/run-unit-test usr/share/man usr/share/man/man1 usr/share/man/man1/ivar.1.gz