plasmidid (1.6.5+dfsg-2build1)

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-stonking
Repository
https://nl.archive.ubuntu.com/ubuntu
Codename
stonking
Component
universe
Source
none
Architecture
amd64v3
Section
universe/science
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
329 B
Size expected
46.9 kB
Size actual
46.9 kB
Size match

Dependencies

Required package dependencies

  • python3:any
  • ncbi-blast+
  • bedtools
  • bowtie2
  • samtools
  • prokka
  • cd-hit
  • mash
  • circos

Suggested packages

Recommended additional packages

  • None

Description

mapping-based, assembly-assisted plasmid identification tool

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD59de0c542…3cb9eba2
SHA-16430a5a9…17a3747c
SHA-2565c691871…09848695
SHA-5125ab6127f…0a31a3e8

Contents

Files and directories included

.
etc
etc/plasmidid
etc/plasmidid/OR.conf
etc/plasmidid/annotation_config_file.txt
etc/plasmidid/circos_individual_1_3_0.conf
etc/plasmidid/circos_individual_1_3_3.conf
etc/plasmidid/circos_summary_1_3_0.conf
etc/plasmidid/circos_summary_1_3_3.conf
etc/plasmidid/simple.conf
usr
usr/bin
usr/bin/plasmidID
usr/share
usr/share/doc
usr/share/doc/plasmidid
usr/share/doc/plasmidid/changelog.Debian.gz
usr/share/doc/plasmidid/copyright
usr/share/man
usr/share/man/man1
usr/share/man/man1/plasmidID.1.gz
usr/share/plasmidid
usr/share/plasmidid/bin
usr/share/plasmidid/bin/adapt_filter_coverage.sh
usr/share/plasmidid/bin/blast_align.sh
usr/share/plasmidid/bin/blast_to_bed.sh
usr/share/plasmidid/bin/blast_to_complete.sh
usr/share/plasmidid/bin/blast_to_link.sh
usr/share/plasmidid/bin/bowtie_mapper.sh
usr/share/plasmidid/bin/build_karyotype.sh
usr/share/plasmidid/bin/calculate_seqlen.sh
usr/share/plasmidid/bin/cdhit_cluster.sh
usr/share/plasmidid/bin/check_dependencies.sh
usr/share/plasmidid/bin/check_mandatory_files.sh
usr/share/plasmidid/bin/coordinate_adapter.sh
usr/share/plasmidid/bin/download_plasmid_database.py
usr/share/plasmidid/bin/draw_circos_images.sh
usr/share/plasmidid/bin/filter_fasta.sh
usr/share/plasmidid/bin/get_coverage.sh
usr/share/plasmidid/bin/gff_to_bed.sh
usr/share/plasmidid/bin/mash_screener.sh
usr/share/plasmidid/bin/mashclust.py
usr/share/plasmidid/bin/ncbi_database_fetcher.sh
usr/share/plasmidid/bin/process_cluster_output.sh
usr/share/plasmidid/bin/prokka_annotation.sh
usr/share/plasmidid/bin/quality_trim.sh
usr/share/plasmidid/bin/rename_from_fasta.sh
usr/share/plasmidid/bin/sam_to_bam.sh
usr/share/plasmidid/bin/spades_assembly.sh
usr/share/plasmidid/bin/summary_report_pid.py
usr/share/plasmidid/bin/summary_table.sh
usr/share/plasmidid/plasmidID
usr/share/python3
usr/share/python3/runtime.d
usr/share/python3/runtime.d/plasmidid.rtupdate