python3-cctbx (2026.4+ds2+~3.28.0+ds1-2)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- cctbx
- Architecture
- amd64v3
- Section
- universe/python
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 248.5 kB
- Size expected
- 109.1 MB
- Size actual
- 109.1 MB
- Size match
Dependencies
Required package dependencies
- ca-certificates
- libcctbx-dev (= 2026.4+ds2+~3.28.0+ds1-2)
- libcctbx0 (= 2026.4+ds2+~3.28.0+ds1-2)
- python3-legacy-cgi
- python3-pycbf (>= 0.9.7+dfsg1-2~)
- tcsh | csh | c-shell
- python3 (<< 3.15)
- python3 (>= 3.14~)
- python3-h5py (>= 3)
- python3-hdf5plugin
- python3-matplotlib
- python3-mrcfile
- python3-natsort
- python3-numpy
- python3-numpy2-abi0 | python3-numpy-abi9
- python3-nxmx
- python3-ordered-set
- python3-pil
- python3-pint
- python3-procrunner
- python3-pymol
- python3-requests
- python3-scipy
- python3-six
- python3-tqdm
- python3-wxgtk4.0
- python3:any
- libantlr3c-3.4-0 | libantlr3c-antlrdbg-3.4-0
- libboost-numpy1.90.0 (>= 1.90.0)
- libboost-numpy1.90.0-py314
- libboost-python1.90.0 (>= 1.90.0)
- libboost-python1.90.0-py314
- libboost-thread1.90.0 (>= 1.90.0)
- libboost-timer1.90.0 (>= 1.90.0)
- libc6 (>= 2.43)
- libcbf1t64 (>= 0.9.7+dfsg1-2~)
- libccp4c0t64 (>= 8.0.0)
- libgcc-s1 (>= 4.0)
- libgl1
- libglu1-mesa | libglu1
- libhdf5-310 (>= 1.14.3)
- libmmdb2-0 (>= 2.0.22)
- libssm2 (>= 1.4.0)
- libstdc++6 (>= 14)
Suggested packages
Recommended additional packages
- None
Description
Python Toolbox for crystallography
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 57782f3c…b4a92399 | |
| SHA-1 | e764d9d0…fd689672 | |
| SHA-256 | 578065d9…59336bb6 | |
| SHA-512 | 1f998dab…c569b9a0 |
Contents
Files and directories included
. usr usr/bin usr/bin/annlib.python usr/bin/annlib.show_build_path usr/bin/annlib.show_dist_paths usr/bin/boost.gcd usr/bin/boost.lcm usr/bin/boost.python usr/bin/boost.show_build_path usr/bin/boost.show_dist_paths usr/bin/boost_adaptbx.divide_by_zero usr/bin/boost_adaptbx.double_overflow usr/bin/boost_adaptbx.inexact usr/bin/boost_adaptbx.int_overflow usr/bin/boost_adaptbx.nested_cpp_loops_with_check_signals usr/bin/boost_adaptbx.segmentation_fault usr/bin/boost_adaptbx.show_environ_usage usr/bin/boost_adaptbx.show_platform_info usr/bin/cbf.dump usr/bin/cbflib.python usr/bin/cbflib.show_build_path usr/bin/cbflib.show_dist_paths usr/bin/cbflib.tst_memory usr/bin/ccp4io.python usr/bin/ccp4io.show_build_path usr/bin/ccp4io.show_dist_paths usr/bin/cctbx.HKLinfo usr/bin/cctbx.HKLviewer usr/bin/cctbx.brehm_diederichs usr/bin/cctbx.cod_select_and_pickle usr/bin/cctbx.convert_ccp4_symop_lib usr/bin/cctbx.data_viewer usr/bin/cctbx.eltbx.show_fp_fdp usr/bin/cctbx.euclidean_model_matching usr/bin/cctbx.find_distances usr/bin/cctbx.getting_started usr/bin/cctbx.image_viewer usr/bin/cctbx.lattice_symmetry usr/bin/cctbx.loggraph usr/bin/cctbx.make_install_HKLviewer_ChimeraX usr/bin/cctbx.multiplicity_viewer usr/bin/cctbx.patterson_map usr/bin/cctbx.plot_anomalous_scattering usr/bin/cctbx.precession_view usr/bin/cctbx.python usr/bin/cctbx.show_build_path usr/bin/cctbx.show_dist_paths usr/bin/cctbx.show_systematic_absences usr/bin/cctbx.space_group_info usr/bin/cctbx.structure_factor_timings usr/bin/cctbx.subgroups usr/bin/cctbx.suitename usr/bin/cctbx.suitename_old usr/bin/cctbx.sym_equiv_sites usr/bin/cctbx.sys_abs_equiv_space_groups usr/bin/cctbx.version usr/bin/cctbx.visualize_r_factors usr/bin/cctbx.wavelength_units usr/bin/cctbx.web.install usr/bin/cctbx.wxpython usr/bin/cctbx_blobs usr/bin/cctbx_regression.test_nightly usr/bin/cma_es.python usr/bin/cma_es.show_build_path usr/bin/cma_es.show_dist_paths usr/bin/crys3d.model_viewer usr/bin/crys3d.python usr/bin/crys3d.qttbx.view_structure usr/bin/crys3d.show_build_path usr/bin/crys3d.show_dist_paths usr/bin/cxi.image2pickle usr/bin/cxi.image_average usr/bin/dev.dxtbx.debug_memory usr/bin/dev.dxtbx.read_sequence usr/bin/distl.find_active_area usr/bin/distl.image_viewer usr/bin/distl.mp_spotfinder_server_read_file usr/bin/distl.signal_strength usr/bin/distl.sweep_strength usr/bin/distl.thin_client usr/bin/dxtbx.any2nexus usr/bin/dxtbx.depends_on usr/bin/dxtbx.detector_superpose usr/bin/dxtbx.display_parallax_correction usr/bin/dxtbx.dlsnxs2cbf usr/bin/dxtbx.image2pickle usr/bin/dxtbx.image_average usr/bin/dxtbx.install_format usr/bin/dxtbx.overload usr/bin/dxtbx.plot_detector_models usr/bin/dxtbx.print_header usr/bin/dxtbx.print_matching_images usr/bin/dxtbx.python usr/bin/dxtbx.radial_average usr/bin/dxtbx.saturation usr/bin/dxtbx.show_build_path usr/bin/dxtbx.show_dist_paths usr/bin/dxtbx.show_mask_info usr/bin/dxtbx.show_matching_formats usr/bin/dxtbx.show_registry usr/bin/fable.cout usr/bin/fable.fem_include_search_paths usr/bin/fable.insert_write_at_start_of_each_procedure usr/bin/fable.python usr/bin/fable.read usr/bin/fable.show_build_path usr/bin/fable.show_calls usr/bin/fable.show_dist_paths usr/bin/fable.split usr/bin/gltbx.python usr/bin/gltbx.show_build_path usr/bin/gltbx.show_dist_paths usr/bin/gltbx.try_imports usr/bin/iotbx.blast_pdb usr/bin/iotbx.build_phil_cache usr/bin/iotbx.cbf_read usr/bin/iotbx.cif.as_miller_arrays usr/bin/iotbx.cif.as_xray_structure usr/bin/iotbx.cif.validate usr/bin/iotbx.cif_as_mtz usr/bin/iotbx.cif_as_pdb usr/bin/iotbx.cns.reflection_reader usr/bin/iotbx.cns.sdb_reader usr/bin/iotbx.cns.transfer_crystal_symmetry usr/bin/iotbx.crystal_symmetry_from_any usr/bin/iotbx.dano_as_amplitudes usr/bin/iotbx.distance_least_squares usr/bin/iotbx.dtrek.to_cns usr/bin/iotbx.emma usr/bin/iotbx.export_scalepack_unmerged usr/bin/iotbx.fetch_pdb usr/bin/iotbx.file_reader usr/bin/iotbx.french_wilson usr/bin/iotbx.get_pubmed_citation usr/bin/iotbx.lattice_symmetry usr/bin/iotbx.merging_statistics usr/bin/iotbx.mtz.dump usr/bin/iotbx.pdb.add_conformations usr/bin/iotbx.pdb.as_xray_structure usr/bin/iotbx.pdb.box_around_molecule usr/bin/iotbx.pdb.flip_symmetric_amino_acids usr/bin/iotbx.pdb.get_citation usr/bin/iotbx.pdb.insert_scale_records usr/bin/iotbx.pdb.join_fragment_files usr/bin/iotbx.pdb.link_as_geometry_restraints_edits usr/bin/iotbx.pdb.print_sequence usr/bin/iotbx.pdb.show_connectivity usr/bin/iotbx.pdb.sort_atoms usr/bin/iotbx.pdb.split_models usr/bin/iotbx.pdb.superpose_atoms_by_name usr/bin/iotbx.pdb.superpose_centers_of_mass usr/bin/iotbx.pdb_as_fasta usr/bin/iotbx.pdb_labels_comparison usr/bin/iotbx.pdb_labels_diff usr/bin/iotbx.pdb_remediator usr/bin/iotbx.phil usr/bin/iotbx.poscar_as_xray_structure usr/bin/iotbx.python usr/bin/iotbx.r_free_flags_accumulation usr/bin/iotbx.r_free_flags_as_cns usr/bin/iotbx.r_free_flags_completion_simple usr/bin/iotbx.reflection_file_converter usr/bin/iotbx.reflection_file_editor usr/bin/iotbx.reflection_file_reader usr/bin/iotbx.shelx.as_cif usr/bin/iotbx.shelx.as_xray_structure usr/bin/iotbx.shelx.dump_as_python usr/bin/iotbx.show_build_path usr/bin/iotbx.show_dist_paths usr/bin/iotbx.show_distances usr/bin/iotbx.simple_map_coefficients usr/bin/iotbx.split_data_cif usr/bin/iotbx.symmetry_search usr/bin/iotbx.unique_with_biomt usr/bin/iotbx.xplor.map.show_summary usr/bin/labelit.png usr/bin/libtbx.add_docstrings_with_ai usr/bin/libtbx.analyse_code_comments usr/bin/libtbx.any2unix usr/bin/libtbx.assert_line_count usr/bin/libtbx.assert_not_show_diff usr/bin/libtbx.assert_stdin usr/bin/libtbx.assert_stdin_contains_strings usr/bin/libtbx.assert_stdin_does_not_contain_strings usr/bin/libtbx.assert_stdin_ends_with usr/bin/libtbx.bash usr/bin/libtbx.bibtex usr/bin/libtbx.bootstrap usr/bin/libtbx.bundle_as_exe usr/bin/libtbx.bundle_as_selfx usr/bin/libtbx.check_libcpp usr/bin/libtbx.chunk usr/bin/libtbx.clean_clutter usr/bin/libtbx.clear_paths usr/bin/libtbx.configure usr/bin/libtbx.create_cctbx_bundle_for_installer usr/bin/libtbx.create_install_script_bat usr/bin/libtbx.create_installer usr/bin/libtbx.create_mac_app usr/bin/libtbx.create_selfx usr/bin/libtbx.create_unzipsfx usr/bin/libtbx.create_windows_exe usr/bin/libtbx.csh usr/bin/libtbx.dtrace usr/bin/libtbx.easy_qsub usr/bin/libtbx.env_run usr/bin/libtbx.epydoc_run usr/bin/libtbx.exec usr/bin/libtbx.extract_code_from_txt usr/bin/libtbx.find_clutter usr/bin/libtbx.find_files usr/bin/libtbx.find_in_repositories usr/bin/libtbx.find_old_style_classes usr/bin/libtbx.find_pdb_mmcif_problems usr/bin/libtbx.find_reserved_names usr/bin/libtbx.find_under_build usr/bin/libtbx.find_untested usr/bin/libtbx.find_unused_imports usr/bin/libtbx.find_unused_imports_crude usr/bin/libtbx.gdb usr/bin/libtbx.git_avoid_merges usr/bin/libtbx.help usr/bin/libtbx.import_all_ext usr/bin/libtbx.import_all_python usr/bin/libtbx.install usr/bin/libtbx.install_conda usr/bin/libtbx.latex usr/bin/libtbx.line_count usr/bin/libtbx.list_files usr/bin/libtbx.list_modules usr/bin/libtbx.list_source_files_sorted_by_size usr/bin/libtbx.make_dist usr/bin/libtbx.make_sphinx_html usr/bin/libtbx.nequal usr/bin/libtbx.parallel_simple usr/bin/libtbx.path_utility usr/bin/libtbx.pdflatex usr/bin/libtbx.phil usr/bin/libtbx.prime_factors_of usr/bin/libtbx.printenv usr/bin/libtbx.py_compile_all usr/bin/libtbx.python usr/bin/libtbx.raise_exception_for_testing usr/bin/libtbx.refresh usr/bin/libtbx.reindent usr/bin/libtbx.remote_processing usr/bin/libtbx.remove_tree usr/bin/libtbx.remove_unused_imports usr/bin/libtbx.resource_monitor_plot usr/bin/libtbx.run_pickled_function usr/bin/libtbx.run_tests_parallel usr/bin/libtbx.scons usr/bin/libtbx.seconds_since_the_epoch usr/bin/libtbx.sge_available_slots usr/bin/libtbx.sge_qstat_counts usr/bin/libtbx.sh usr/bin/libtbx.show_all_on_path usr/bin/libtbx.show_bin_path usr/bin/libtbx.show_build_options usr/bin/libtbx.show_build_path usr/bin/libtbx.show_but_no_repr usr/bin/libtbx.show_commands usr/bin/libtbx.show_date_and_time usr/bin/libtbx.show_dist_paths usr/bin/libtbx.show_env usr/bin/libtbx.show_environ_usage usr/bin/libtbx.show_full_command_path usr/bin/libtbx.show_host_and_user usr/bin/libtbx.show_include_paths usr/bin/libtbx.show_lib_path usr/bin/libtbx.show_module_dependencies usr/bin/libtbx.show_number_of_processors usr/bin/libtbx.show_numeric_version usr/bin/libtbx.show_numpy_version usr/bin/libtbx.show_python_dependencies usr/bin/libtbx.show_python_sys_executable usr/bin/libtbx.show_pythonpath usr/bin/libtbx.show_repository_paths usr/bin/libtbx.show_tests usr/bin/libtbx.show_variable_names usr/bin/libtbx.start_binary_bundle usr/bin/libtbx.start_process usr/bin/libtbx.tcsh usr/bin/libtbx.unpack_in_sources usr/bin/libtbx.valgrind usr/bin/libtbx.wait_for_file usr/bin/mmtbx.TAAM_minus_IAM usr/bin/mmtbx.altloc_remediate usr/bin/mmtbx.apply_ncs_to_ligand usr/bin/mmtbx.arginine_geometry usr/bin/mmtbx.bfactor_plot usr/bin/mmtbx.clashscore2 usr/bin/mmtbx.debugging.hydrogenate usr/bin/mmtbx.debugging.riding usr/bin/mmtbx.density_modification usr/bin/mmtbx.development.aev usr/bin/mmtbx.development.electrons usr/bin/mmtbx.development.ligand_restraints_validation usr/bin/mmtbx.development.qscore usr/bin/mmtbx.development.validate_ligands usr/bin/mmtbx.development.water_b_factors usr/bin/mmtbx.distance_difference usr/bin/mmtbx.emringer_score usr/bin/mmtbx.estimate_bijvoet_ratio usr/bin/mmtbx.fft usr/bin/mmtbx.find_peaks_holes usr/bin/mmtbx.find_residue_in_pdb usr/bin/mmtbx.holton_geometry_validation usr/bin/mmtbx.massage_data usr/bin/mmtbx.matthews usr/bin/mmtbx.model_vs_data usr/bin/mmtbx.model_vs_sequence usr/bin/mmtbx.mon_lib_cif_triage usr/bin/mmtbx.mp_geo usr/bin/mmtbx.nonbonded_overlaps usr/bin/mmtbx.pdb_interpretation usr/bin/mmtbx.pdb_statistics usr/bin/mmtbx.plan_sad_experiment usr/bin/mmtbx.prepare_pdb_deposition usr/bin/mmtbx.probe2 usr/bin/mmtbx.process_predicted_model usr/bin/mmtbx.prune_model usr/bin/mmtbx.python usr/bin/mmtbx.quantum_interface usr/bin/mmtbx.rama_z usr/bin/mmtbx.rebuild_cablam_cache usr/bin/mmtbx.rebuild_rotarama_cache usr/bin/mmtbx.reduce2 usr/bin/mmtbx.reduce_cryoem_resolution usr/bin/mmtbx.refine_anomalous_substructure usr/bin/mmtbx.ribbons usr/bin/mmtbx.rigid_bond_test usr/bin/mmtbx.ringer usr/bin/mmtbx.search_pdb_symmetry usr/bin/mmtbx.select_best_starting_model usr/bin/mmtbx.show_build_path usr/bin/mmtbx.show_dist_paths usr/bin/mmtbx.show_r_factors_by_shell usr/bin/mmtbx.ss_idealization usr/bin/mmtbx.super usr/bin/mmtbx.superpose usr/bin/mmtbx.table_one usr/bin/mmtbx.undowser2_validation usr/bin/mmtbx.validation_summary usr/bin/mmtbx.verify_mon_lib_data usr/bin/mmtbx.where_is_that_cif_file usr/bin/mmtbx.xtriage usr/bin/mmtbx.xtriage_gui usr/bin/molprobity.barbed_wire_analysis usr/bin/molprobity.cablam usr/bin/molprobity.cbetadev usr/bin/molprobity.chiral_validation usr/bin/molprobity.clashscore usr/bin/molprobity.clashscore2 usr/bin/molprobity.kinemage usr/bin/molprobity.molprobity usr/bin/molprobity.mp_validate_bonds usr/bin/molprobity.omegalyze usr/bin/molprobity.probescore_ligand usr/bin/molprobity.ramalyze usr/bin/molprobity.rna_validate usr/bin/molprobity.rna_validate_bonds usr/bin/molprobity.rna_validate_puckers usr/bin/molprobity.rna_validate_suites usr/bin/molprobity.rotalyze usr/bin/molprobity.suitename usr/bin/molprobity.suitename_old usr/bin/molprobity.undowser2_validation usr/bin/molprobity.undowser_validation usr/bin/omptbx.python usr/bin/omptbx.show_build_path usr/bin/omptbx.show_dist_paths usr/bin/phasertng.HKLviewer usr/bin/phenix.HKLinfo usr/bin/phenix.HKLviewer usr/bin/phenix.TAAM_minus_IAM usr/bin/phenix.angle usr/bin/phenix.auto_sharpen usr/bin/phenix.barbed_wire_analysis usr/bin/phenix.cablam usr/bin/phenix.cablam_idealization usr/bin/phenix.cbetadev usr/bin/phenix.cc_star usr/bin/phenix.chiral_validation usr/bin/phenix.cif_as_mtz usr/bin/phenix.cif_as_pdb usr/bin/phenix.clashscore usr/bin/phenix.clashscore2 usr/bin/phenix.cns_as_mtz usr/bin/phenix.comparama usr/bin/phenix.compare_datasets usr/bin/phenix.csv_as_mtz usr/bin/phenix.data_viewer usr/bin/phenix.development.next_gen_atom_typing usr/bin/phenix.development.valence_simple usr/bin/phenix.development.xtrapol8 usr/bin/phenix.diffuse usr/bin/phenix.dynamics usr/bin/phenix.emma usr/bin/phenix.emringer usr/bin/phenix.example_viewer usr/bin/phenix.explore_metric_symmetry usr/bin/phenix.f000 usr/bin/phenix.fab_elbow_angle usr/bin/phenix.fake_f_obs usr/bin/phenix.feature_enhanced_map usr/bin/phenix.fem usr/bin/phenix.fetch_pdb usr/bin/phenix.fft usr/bin/phenix.find_peaks_holes usr/bin/phenix.find_reticular_twin_laws usr/bin/phenix.find_tls_groups usr/bin/phenix.fmodel usr/bin/phenix.fobs_minus_fobs_map usr/bin/phenix.form_factor_query usr/bin/phenix.french_wilson usr/bin/phenix.geometry_minimization usr/bin/phenix.grow_density usr/bin/phenix.hbond usr/bin/phenix.helix_sheet_recs_as_pdb_files usr/bin/phenix.holton_geometry_validation usr/bin/phenix.image_viewer usr/bin/phenix.kinemage usr/bin/phenix.map_box usr/bin/phenix.map_comparison usr/bin/phenix.map_to_model_histogram usr/bin/phenix.map_to_structure_factors usr/bin/phenix.maps usr/bin/phenix.mask usr/bin/phenix.maximum_entropy_map usr/bin/phenix.merging_statistics usr/bin/phenix.model_idealization usr/bin/phenix.model_map usr/bin/phenix.model_model_distances usr/bin/phenix.model_vs_map usr/bin/phenix.model_vs_sequence usr/bin/phenix.models_as_chains usr/bin/phenix.molprobity usr/bin/phenix.mp_validate_bonds usr/bin/phenix.mtz.dump usr/bin/phenix.mtz2map usr/bin/phenix.mtz_as_cif usr/bin/phenix.omegalyze usr/bin/phenix.pdb.b_factor_stats usr/bin/phenix.pdb.biomt_reconstruction usr/bin/phenix.pdb.hierarchy usr/bin/phenix.pdb.mtrix_reconstruction usr/bin/phenix.pdb_as_cif usr/bin/phenix.pdb_atom_selection usr/bin/phenix.pdb_cif_conversion 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usr/lib/python3/dist-packages/cctbx/eltbx/development/kissel_fits.py usr/lib/python3/dist-packages/cctbx/eltbx/development/kissel_io.py usr/lib/python3/dist-packages/cctbx/eltbx/development/rez_rez_grant.py usr/lib/python3/dist-packages/cctbx/eltbx/distance_based_connectivity.py usr/lib/python3/dist-packages/cctbx/eltbx/e_scattering.py usr/lib/python3/dist-packages/cctbx/eltbx/formula.py usr/lib/python3/dist-packages/cctbx/eltbx/fp_fdp.py usr/lib/python3/dist-packages/cctbx/eltbx/gaussian_fit.py usr/lib/python3/dist-packages/cctbx/eltbx/henke.py usr/lib/python3/dist-packages/cctbx/eltbx/icsd_radii.py usr/lib/python3/dist-packages/cctbx/eltbx/neutron.py usr/lib/python3/dist-packages/cctbx/eltbx/read_custom_scattering_dict.py usr/lib/python3/dist-packages/cctbx/eltbx/sasaki.py usr/lib/python3/dist-packages/cctbx/eltbx/tests usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_attenuation_coefficient.py usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_chemical_elements.py usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_covalent_radii.py usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_formula.py usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_henke.py usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_icsd_radii.py usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_neutron.py usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_sasaki.py usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_tiny_pse.py usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_wavelengths.py usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_xray_scattering.py usr/lib/python3/dist-packages/cctbx/eltbx/tiny_pse.py usr/lib/python3/dist-packages/cctbx/eltbx/van_der_waals_radii.py usr/lib/python3/dist-packages/cctbx/eltbx/wavelengths.py usr/lib/python3/dist-packages/cctbx/eltbx/xray_scattering usr/lib/python3/dist-packages/cctbx/eltbx/xray_scattering/__init__.py usr/lib/python3/dist-packages/cctbx/euclidean_model_matching.py usr/lib/python3/dist-packages/cctbx/examples usr/lib/python3/dist-packages/cctbx/examples/__init__.py usr/lib/python3/dist-packages/cctbx/examples/adp_symmetry_constraints.py usr/lib/python3/dist-packages/cctbx/examples/all_axes.py usr/lib/python3/dist-packages/cctbx/examples/analyze_adp.py usr/lib/python3/dist-packages/cctbx/examples/ccp4_map.py usr/lib/python3/dist-packages/cctbx/examples/change_hand_p31.py usr/lib/python3/dist-packages/cctbx/examples/convert_ccp4_symop_lib.py usr/lib/python3/dist-packages/cctbx/examples/cr2o3_consistency_checks.py usr/lib/python3/dist-packages/cctbx/examples/cr2o3_primitive_cell.py usr/lib/python3/dist-packages/cctbx/examples/exp_i_alpha_derivatives.py usr/lib/python3/dist-packages/cctbx/examples/f_model_example.py usr/lib/python3/dist-packages/cctbx/examples/fft_map_electron_density_around_atom.py usr/lib/python3/dist-packages/cctbx/examples/find_distances_using_cpp_objects.py usr/lib/python3/dist-packages/cctbx/examples/find_sys_abs_equiv_space_groups.py usr/lib/python3/dist-packages/cctbx/examples/g_exp_i_alpha_derivatives.py usr/lib/python3/dist-packages/cctbx/examples/g_exp_i_partial_derivatives.py usr/lib/python3/dist-packages/cctbx/examples/getting_started.py usr/lib/python3/dist-packages/cctbx/examples/hirshfeld_test.py usr/lib/python3/dist-packages/cctbx/examples/le_page_1982_vs_lebedev_2005.py usr/lib/python3/dist-packages/cctbx/examples/lebedev_2005_perturbation.py usr/lib/python3/dist-packages/cctbx/examples/list_non_principal_continuous_shifts.py usr/lib/python3/dist-packages/cctbx/examples/location_part.py usr/lib/python3/dist-packages/cctbx/examples/map_skewness.py usr/lib/python3/dist-packages/cctbx/examples/maximum_subgroups.py usr/lib/python3/dist-packages/cctbx/examples/merging usr/lib/python3/dist-packages/cctbx/examples/merging/__init__.py usr/lib/python3/dist-packages/cctbx/examples/merging/data_subset.py usr/lib/python3/dist-packages/cctbx/examples/merging/data_utilities.py usr/lib/python3/dist-packages/cctbx/examples/merging/samosa usr/lib/python3/dist-packages/cctbx/examples/merging/samosa/__init__.py usr/lib/python3/dist-packages/cctbx/examples/merging/samosa/join.py usr/lib/python3/dist-packages/cctbx/examples/merging/samosa/per_lattice_postrefinement.py usr/lib/python3/dist-packages/cctbx/examples/merging/samosa/scale.py usr/lib/python3/dist-packages/cctbx/examples/merging/show_results.py usr/lib/python3/dist-packages/cctbx/examples/merging/sigma_correction.py usr/lib/python3/dist-packages/cctbx/examples/merging/task4.py usr/lib/python3/dist-packages/cctbx/examples/merging/test1.py usr/lib/python3/dist-packages/cctbx/examples/merging/test_cc_half.py usr/lib/python3/dist-packages/cctbx/examples/merging/test_levenberg_sparse.py usr/lib/python3/dist-packages/cctbx/examples/merging/tst_permutations.py usr/lib/python3/dist-packages/cctbx/examples/miller_common_sets.py usr/lib/python3/dist-packages/cctbx/examples/miller_transform.py usr/lib/python3/dist-packages/cctbx/examples/neutron_structure_factors.py usr/lib/python3/dist-packages/cctbx/examples/phase_o_phrenia.py usr/lib/python3/dist-packages/cctbx/examples/quartz_structure.py usr/lib/python3/dist-packages/cctbx/examples/random_f_calc.py usr/lib/python3/dist-packages/cctbx/examples/random_puckers.py usr/lib/python3/dist-packages/cctbx/examples/reduced_cell_two_folds.py usr/lib/python3/dist-packages/cctbx/examples/site_symmetry_constraints.py usr/lib/python3/dist-packages/cctbx/examples/site_symmetry_table.py usr/lib/python3/dist-packages/cctbx/examples/space_group_matrices.py usr/lib/python3/dist-packages/cctbx/examples/space_subgroups.py usr/lib/python3/dist-packages/cctbx/examples/steve_collins.py usr/lib/python3/dist-packages/cctbx/examples/structure_factor_calculus usr/lib/python3/dist-packages/cctbx/examples/structure_factor_calculus/__init__.py usr/lib/python3/dist-packages/cctbx/examples/structure_factor_calculus/site_derivatives.py usr/lib/python3/dist-packages/cctbx/examples/structure_factor_calculus/sites_derivatives.py usr/lib/python3/dist-packages/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py usr/lib/python3/dist-packages/cctbx/examples/structure_factor_calculus/u_star_derivatives.py usr/lib/python3/dist-packages/cctbx/examples/structure_factor_derivatives.py usr/lib/python3/dist-packages/cctbx/examples/structure_factor_derivatives_2.py usr/lib/python3/dist-packages/cctbx/examples/structure_factor_derivatives_3.py usr/lib/python3/dist-packages/cctbx/examples/structure_factor_derivatives_4.py usr/lib/python3/dist-packages/cctbx/examples/sub_group_graph.py usr/lib/python3/dist-packages/cctbx/examples/symops_530.py usr/lib/python3/dist-packages/cctbx/examples/trigonal_r_vs_tetragonal_i.py usr/lib/python3/dist-packages/cctbx/examples/tst_exp_i_alpha_derivatives.py usr/lib/python3/dist-packages/cctbx/examples/tst_g_exp_i_alpha_derivatives.py usr/lib/python3/dist-packages/cctbx/examples/tst_phase_o_phrenia.py usr/lib/python3/dist-packages/cctbx/examples/tst_space_subgroups.py usr/lib/python3/dist-packages/cctbx/examples/tst_structure_factor_derivatives.py usr/lib/python3/dist-packages/cctbx/examples/tst_structure_factor_derivatives_2.py usr/lib/python3/dist-packages/cctbx/examples/tst_structure_factor_derivatives_3.py usr/lib/python3/dist-packages/cctbx/examples/tst_structure_factor_derivatives_4.py usr/lib/python3/dist-packages/cctbx/examples/unit_cell_minimizers.py usr/lib/python3/dist-packages/cctbx/examples/unit_cell_refinement.py usr/lib/python3/dist-packages/cctbx/examples/view_fft_map.py usr/lib/python3/dist-packages/cctbx/french_wilson.py usr/lib/python3/dist-packages/cctbx/geometry usr/lib/python3/dist-packages/cctbx/geometry/__init__.py usr/lib/python3/dist-packages/cctbx/geometry/tests usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py usr/lib/python3/dist-packages/cctbx/geometry_restraints usr/lib/python3/dist-packages/cctbx/geometry_restraints/__init__.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/auto_linking_types.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/base_geometry.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/distance_least_squares.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/energies.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/flags.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/lbfgs.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/linking_class.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/manager.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/process_nonbonded_proxies.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/standard_cif_links.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_ext.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_motif.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py usr/lib/python3/dist-packages/cctbx/libtbx_refresh.py usr/lib/python3/dist-packages/cctbx/macro_mol usr/lib/python3/dist-packages/cctbx/macro_mol/__init__.py usr/lib/python3/dist-packages/cctbx/macro_mol/rotation_parameters.py usr/lib/python3/dist-packages/cctbx/maptbx usr/lib/python3/dist-packages/cctbx/maptbx/__init__.py usr/lib/python3/dist-packages/cctbx/maptbx/auto_sharpen.py usr/lib/python3/dist-packages/cctbx/maptbx/bcr usr/lib/python3/dist-packages/cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab usr/lib/python3/dist-packages/cctbx/maptbx/bcr/__init__.py usr/lib/python3/dist-packages/cctbx/maptbx/bcr/bcr.py usr/lib/python3/dist-packages/cctbx/maptbx/bcr/compute_tables.py usr/lib/python3/dist-packages/cctbx/maptbx/bcr/qmap.py 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usr/lib/python3/dist-packages/dxtbx/array_family/flex_table.h usr/lib/python3/dist-packages/dxtbx/array_family/flex_table_suite.h usr/lib/python3/dist-packages/dxtbx/array_family/ref_pickle_double_buffered.h usr/lib/python3/dist-packages/dxtbx/boost_python usr/lib/python3/dist-packages/dxtbx/boost_python/compression.cc usr/lib/python3/dist-packages/dxtbx/boost_python/compression.h usr/lib/python3/dist-packages/dxtbx/boost_python/ext.cpp usr/lib/python3/dist-packages/dxtbx/boost_python/flumpy.cc usr/lib/python3/dist-packages/dxtbx/boost_python/imageset_ext.cc usr/lib/python3/dist-packages/dxtbx/command_line usr/lib/python3/dist-packages/dxtbx/command_line/__init__.py usr/lib/python3/dist-packages/dxtbx/command_line/any2nexus.py usr/lib/python3/dist-packages/dxtbx/command_line/debug_memory.py usr/lib/python3/dist-packages/dxtbx/command_line/depends_on.py usr/lib/python3/dist-packages/dxtbx/command_line/detector_superpose.py 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usr/lib/python3/dist-packages/iotbx/data_manager/phil.py usr/lib/python3/dist-packages/iotbx/data_manager/real_map.py usr/lib/python3/dist-packages/iotbx/data_manager/restraint.py usr/lib/python3/dist-packages/iotbx/data_manager/sequence.py usr/lib/python3/dist-packages/iotbx/data_plots.py usr/lib/python3/dist-packages/iotbx/detectors usr/lib/python3/dist-packages/iotbx/detectors/__init__.py usr/lib/python3/dist-packages/iotbx/detectors/active_area_filter.py usr/lib/python3/dist-packages/iotbx/detectors/adsc.py usr/lib/python3/dist-packages/iotbx/detectors/adsc_minicbf.py usr/lib/python3/dist-packages/iotbx/detectors/adsc_module.py usr/lib/python3/dist-packages/iotbx/detectors/beam_center_convention.py usr/lib/python3/dist-packages/iotbx/detectors/bruker.py usr/lib/python3/dist-packages/iotbx/detectors/cbf.py usr/lib/python3/dist-packages/iotbx/detectors/context usr/lib/python3/dist-packages/iotbx/detectors/context/__init__.py usr/lib/python3/dist-packages/iotbx/detectors/context/camera_convention.py usr/lib/python3/dist-packages/iotbx/detectors/context/config_detector.py usr/lib/python3/dist-packages/iotbx/detectors/context/endstation.py usr/lib/python3/dist-packages/iotbx/detectors/context/endstation_max_iv_trial.py usr/lib/python3/dist-packages/iotbx/detectors/context/spot_xy_convention.py usr/lib/python3/dist-packages/iotbx/detectors/cspad_detector_formats.py usr/lib/python3/dist-packages/iotbx/detectors/detectorbase.py usr/lib/python3/dist-packages/iotbx/detectors/dtrek.py usr/lib/python3/dist-packages/iotbx/detectors/edf.py usr/lib/python3/dist-packages/iotbx/detectors/eiger.py usr/lib/python3/dist-packages/iotbx/detectors/eiger_minicbf.py usr/lib/python3/dist-packages/iotbx/detectors/generic_detector.py usr/lib/python3/dist-packages/iotbx/detectors/hamamatsu.py usr/lib/python3/dist-packages/iotbx/detectors/image_from_http_request.py usr/lib/python3/dist-packages/iotbx/detectors/macscience.py 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usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py usr/lib/python3/dist-packages/iotbx/regression/secondary_structure usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation.py usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation_long.py usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_sheet.py usr/lib/python3/dist-packages/iotbx/regression/tst_add_conformations.py usr/lib/python3/dist-packages/iotbx/regression/tst_all_chain_ids.py usr/lib/python3/dist-packages/iotbx/regression/tst_atom_selections_10k.py usr/lib/python3/dist-packages/iotbx/regression/tst_bioinformatics.py usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py usr/lib/python3/dist-packages/iotbx/regression/tst_cif_1.py usr/lib/python3/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py usr/lib/python3/dist-packages/iotbx/regression/tst_cli_parser.py usr/lib/python3/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py usr/lib/python3/dist-packages/iotbx/regression/tst_csv_utils.py usr/lib/python3/dist-packages/iotbx/regression/tst_data_manager.py usr/lib/python3/dist-packages/iotbx/regression/tst_data_plots.py usr/lib/python3/dist-packages/iotbx/regression/tst_examples.py usr/lib/python3/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py usr/lib/python3/dist-packages/iotbx/regression/tst_extract_xtal_data.py usr/lib/python3/dist-packages/iotbx/regression/tst_fetch.py usr/lib/python3/dist-packages/iotbx/regression/tst_file_reader.py usr/lib/python3/dist-packages/iotbx/regression/tst_generate_n_char_string.py usr/lib/python3/dist-packages/iotbx/regression/tst_group_rounding.py usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_altlocs.py usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_id_str.py usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_pdb_v3.py usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_2.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_wrapping.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_2.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_3.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_4.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_cif.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py usr/lib/python3/dist-packages/iotbx/regression/tst_map_tools.py usr/lib/python3/dist-packages/iotbx/regression/tst_merging_statistics.py usr/lib/python3/dist-packages/iotbx/regression/tst_miller_sort_asu.py usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_input.py usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_multimodel.py usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_segids.py usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py usr/lib/python3/dist-packages/iotbx/regression/tst_mrc_io.py usr/lib/python3/dist-packages/iotbx/regression/tst_mtz_as_cif.py usr/lib/python3/dist-packages/iotbx/regression/tst_patterson.py usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_cif.py usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_fasta.py usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_cells.py usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_link_records.py usr/lib/python3/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py usr/lib/python3/dist-packages/iotbx/regression/tst_phases.py usr/lib/python3/dist-packages/iotbx/regression/tst_phil.py usr/lib/python3/dist-packages/iotbx/regression/tst_poscar.py usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_editor.py usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_reader.py usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_utils.py usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_statistics.py usr/lib/python3/dist-packages/iotbx/regression/tst_reindex.py usr/lib/python3/dist-packages/iotbx/regression/tst_restraints_merge.py usr/lib/python3/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py usr/lib/python3/dist-packages/iotbx/regression/tst_show_systematic_absences.py usr/lib/python3/dist-packages/iotbx/regression/tst_simple_map_coefficients.py usr/lib/python3/dist-packages/iotbx/regression/tst_simple_parser.py usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py usr/lib/python3/dist-packages/iotbx/regression/tst_symmetry.py usr/lib/python3/dist-packages/iotbx/regression/tst_wildcard.py usr/lib/python3/dist-packages/iotbx/regression/tst_xray_scale.py usr/lib/python3/dist-packages/iotbx/regression/utils.py usr/lib/python3/dist-packages/iotbx/run_tests.py usr/lib/python3/dist-packages/iotbx/scalepack usr/lib/python3/dist-packages/iotbx/scalepack/__init__.py usr/lib/python3/dist-packages/iotbx/scalepack/crystal_symmetry_from_hkl.py usr/lib/python3/dist-packages/iotbx/scalepack/merge.py usr/lib/python3/dist-packages/iotbx/scalepack/no_merge_original_index.py usr/lib/python3/dist-packages/iotbx/scalepack/space_group_dictionary.py usr/lib/python3/dist-packages/iotbx/scalepack/tst_merge.py usr/lib/python3/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py usr/lib/python3/dist-packages/iotbx/shelx usr/lib/python3/dist-packages/iotbx/shelx/__init__.py usr/lib/python3/dist-packages/iotbx/shelx/crystal_symmetry_from_ins.py usr/lib/python3/dist-packages/iotbx/shelx/errors.py usr/lib/python3/dist-packages/iotbx/shelx/fcf.py usr/lib/python3/dist-packages/iotbx/shelx/fvar_encoding.py usr/lib/python3/dist-packages/iotbx/shelx/hklf.py usr/lib/python3/dist-packages/iotbx/shelx/lexer.py usr/lib/python3/dist-packages/iotbx/shelx/parsers.py usr/lib/python3/dist-packages/iotbx/shelx/tokens.py usr/lib/python3/dist-packages/iotbx/shelx/tst_fvar_encoding.py usr/lib/python3/dist-packages/iotbx/shelx/tst_hklf.py usr/lib/python3/dist-packages/iotbx/shelx/tst_lex_parse_build.py usr/lib/python3/dist-packages/iotbx/shelx/tst_writer.py usr/lib/python3/dist-packages/iotbx/shelx/write_ins.py usr/lib/python3/dist-packages/iotbx/shelx/writer.py usr/lib/python3/dist-packages/iotbx/simple_parser.py usr/lib/python3/dist-packages/iotbx/solve usr/lib/python3/dist-packages/iotbx/solve/__init__.py usr/lib/python3/dist-packages/iotbx/solve/crystal_symmetry_from_inp.py usr/lib/python3/dist-packages/iotbx/solve/fpfm_reader.py usr/lib/python3/dist-packages/iotbx/symmetry.py usr/lib/python3/dist-packages/iotbx/table_one.py usr/lib/python3/dist-packages/iotbx/wildcard.py usr/lib/python3/dist-packages/iotbx/xds usr/lib/python3/dist-packages/iotbx/xds/__init__.py usr/lib/python3/dist-packages/iotbx/xds/blank_cbf.py usr/lib/python3/dist-packages/iotbx/xds/correction.py usr/lib/python3/dist-packages/iotbx/xds/crystal_symmetry_from_hkl.py usr/lib/python3/dist-packages/iotbx/xds/gain_cbf.py usr/lib/python3/dist-packages/iotbx/xds/geometry.py usr/lib/python3/dist-packages/iotbx/xds/integrate_hkl.py usr/lib/python3/dist-packages/iotbx/xds/read_ascii.py usr/lib/python3/dist-packages/iotbx/xds/spot_xds.py usr/lib/python3/dist-packages/iotbx/xds/tests usr/lib/python3/dist-packages/iotbx/xds/tests/INTEGRATE.HKL usr/lib/python3/dist-packages/iotbx/xds/tests/NEW_XPARM.XDS usr/lib/python3/dist-packages/iotbx/xds/tests/XDS.INP usr/lib/python3/dist-packages/iotbx/xds/tests/XDS_2.INP usr/lib/python3/dist-packages/iotbx/xds/tests/XPARM.XDS usr/lib/python3/dist-packages/iotbx/xds/tests/tst_integrate_hkl.py usr/lib/python3/dist-packages/iotbx/xds/tests/tst_spots_xds.py usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xds_inp.py usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xparm.py usr/lib/python3/dist-packages/iotbx/xds/xds_cbf.py usr/lib/python3/dist-packages/iotbx/xds/xds_inp.py usr/lib/python3/dist-packages/iotbx/xds/xparm.py usr/lib/python3/dist-packages/iotbx/xplor usr/lib/python3/dist-packages/iotbx/xplor/__init__.py usr/lib/python3/dist-packages/iotbx/xplor/crystal_symmetry_from_map.py usr/lib/python3/dist-packages/iotbx/xplor/ext.py usr/lib/python3/dist-packages/iotbx/xplor/map.py usr/lib/python3/dist-packages/iotbx/xplor/tst_xplormap.py usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/libtbx usr/lib/python3/dist-packages/libtbx/__init__.py usr/lib/python3/dist-packages/libtbx/assert_utils.py usr/lib/python3/dist-packages/libtbx/auto_build usr/lib/python3/dist-packages/libtbx/auto_build/__init__.py usr/lib/python3/dist-packages/libtbx/auto_build/bootstrap.py usr/lib/python3/dist-packages/libtbx/auto_build/create_cctbx_bundle_for_installer.py usr/lib/python3/dist-packages/libtbx/auto_build/create_installer.py usr/lib/python3/dist-packages/libtbx/auto_build/create_mac_app.py usr/lib/python3/dist-packages/libtbx/auto_build/create_mac_pkg.py usr/lib/python3/dist-packages/libtbx/auto_build/create_windows_exe.py usr/lib/python3/dist-packages/libtbx/auto_build/create_windows_installer.py usr/lib/python3/dist-packages/libtbx/auto_build/install_base_packages.py usr/lib/python3/dist-packages/libtbx/auto_build/install_conda.py usr/lib/python3/dist-packages/libtbx/auto_build/install_distribution.py usr/lib/python3/dist-packages/libtbx/auto_build/installer_utils.py usr/lib/python3/dist-packages/libtbx/auto_build/make_bundle.py usr/lib/python3/dist-packages/libtbx/auto_build/package_defs.py usr/lib/python3/dist-packages/libtbx/auto_build/plus_installer.py usr/lib/python3/dist-packages/libtbx/auto_build/regenerate_module_files.py usr/lib/python3/dist-packages/libtbx/auto_build/rpath.py usr/lib/python3/dist-packages/libtbx/auto_build/setup_installer.py usr/lib/python3/dist-packages/libtbx/auto_build/write_gui_dispatcher_include.py usr/lib/python3/dist-packages/libtbx/binary_search.py usr/lib/python3/dist-packages/libtbx/bundle usr/lib/python3/dist-packages/libtbx/bundle/__init__.py usr/lib/python3/dist-packages/libtbx/bundle/copy_all.py usr/lib/python3/dist-packages/libtbx/bundle/copy_build_libtbx.py usr/lib/python3/dist-packages/libtbx/bundle/copy_runtime_sources.py usr/lib/python3/dist-packages/libtbx/bundle/install_bat.py usr/lib/python3/dist-packages/libtbx/bundle/install_csh.py usr/lib/python3/dist-packages/libtbx/bundle/utils.py usr/lib/python3/dist-packages/libtbx/callbacks.py usr/lib/python3/dist-packages/libtbx/citations.params usr/lib/python3/dist-packages/libtbx/citations.py usr/lib/python3/dist-packages/libtbx/clear_paths.py usr/lib/python3/dist-packages/libtbx/cli.py usr/lib/python3/dist-packages/libtbx/cluster.py usr/lib/python3/dist-packages/libtbx/clusterTests.py usr/lib/python3/dist-packages/libtbx/code_analysis.py usr/lib/python3/dist-packages/libtbx/command_line usr/lib/python3/dist-packages/libtbx/command_line/__init__.py usr/lib/python3/dist-packages/libtbx/command_line/add_docstrings_with_ai.py usr/lib/python3/dist-packages/libtbx/command_line/analyse_code_comments.py usr/lib/python3/dist-packages/libtbx/command_line/any2unix.py usr/lib/python3/dist-packages/libtbx/command_line/assert_line_count.py usr/lib/python3/dist-packages/libtbx/command_line/assert_not_show_diff.py usr/lib/python3/dist-packages/libtbx/command_line/assert_stdin.py usr/lib/python3/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py usr/lib/python3/dist-packages/libtbx/command_line/assert_stdin_ends_with.py usr/lib/python3/dist-packages/libtbx/command_line/bash.sh usr/lib/python3/dist-packages/libtbx/command_line/bibtex.sh usr/lib/python3/dist-packages/libtbx/command_line/bootstrap.py usr/lib/python3/dist-packages/libtbx/command_line/bundle_as_exe.py usr/lib/python3/dist-packages/libtbx/command_line/bundle_as_selfx.csh usr/lib/python3/dist-packages/libtbx/command_line/cctbx_chunk.py usr/lib/python3/dist-packages/libtbx/command_line/check_libcpp.py usr/lib/python3/dist-packages/libtbx/command_line/clean_clutter.py usr/lib/python3/dist-packages/libtbx/command_line/clear_paths.py usr/lib/python3/dist-packages/libtbx/command_line/configure.bat usr/lib/python3/dist-packages/libtbx/command_line/configure.sh usr/lib/python3/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py usr/lib/python3/dist-packages/libtbx/command_line/create_install_script_bat.py usr/lib/python3/dist-packages/libtbx/command_line/create_installer.py usr/lib/python3/dist-packages/libtbx/command_line/create_mac_app.py usr/lib/python3/dist-packages/libtbx/command_line/create_selfx.py usr/lib/python3/dist-packages/libtbx/command_line/create_unzipsfx.py usr/lib/python3/dist-packages/libtbx/command_line/create_windows_exe.py usr/lib/python3/dist-packages/libtbx/command_line/csh.sh usr/lib/python3/dist-packages/libtbx/command_line/dtrace.py usr/lib/python3/dist-packages/libtbx/command_line/easy_qsub.py usr/lib/python3/dist-packages/libtbx/command_line/env_run.py usr/lib/python3/dist-packages/libtbx/command_line/epydoc_run.py usr/lib/python3/dist-packages/libtbx/command_line/exec.sh usr/lib/python3/dist-packages/libtbx/command_line/extract_code_from_txt.py usr/lib/python3/dist-packages/libtbx/command_line/find_clutter.py usr/lib/python3/dist-packages/libtbx/command_line/find_files.py usr/lib/python3/dist-packages/libtbx/command_line/find_in_repositories.py usr/lib/python3/dist-packages/libtbx/command_line/find_old_style_classes.py usr/lib/python3/dist-packages/libtbx/command_line/find_pdb_mmcif_problems.py usr/lib/python3/dist-packages/libtbx/command_line/find_reserved_names.py usr/lib/python3/dist-packages/libtbx/command_line/find_under_build.py usr/lib/python3/dist-packages/libtbx/command_line/find_untested.py usr/lib/python3/dist-packages/libtbx/command_line/find_unused_imports.py usr/lib/python3/dist-packages/libtbx/command_line/find_unused_imports_crude.py usr/lib/python3/dist-packages/libtbx/command_line/gdb.sh usr/lib/python3/dist-packages/libtbx/command_line/git_avoid_merges.py usr/lib/python3/dist-packages/libtbx/command_line/help.py usr/lib/python3/dist-packages/libtbx/command_line/import_all_ext.py usr/lib/python3/dist-packages/libtbx/command_line/import_all_python.py usr/lib/python3/dist-packages/libtbx/command_line/install.py usr/lib/python3/dist-packages/libtbx/command_line/install_conda.py usr/lib/python3/dist-packages/libtbx/command_line/ipython_shell_start.py usr/lib/python3/dist-packages/libtbx/command_line/latex.sh usr/lib/python3/dist-packages/libtbx/command_line/line_count.py usr/lib/python3/dist-packages/libtbx/command_line/list_files.py usr/lib/python3/dist-packages/libtbx/command_line/list_modules.py usr/lib/python3/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py usr/lib/python3/dist-packages/libtbx/command_line/make_dist.py usr/lib/python3/dist-packages/libtbx/command_line/make_sphinx_html.py usr/lib/python3/dist-packages/libtbx/command_line/nequal.py usr/lib/python3/dist-packages/libtbx/command_line/parallel_simple.py usr/lib/python3/dist-packages/libtbx/command_line/path_utility.py usr/lib/python3/dist-packages/libtbx/command_line/pdflatex.sh usr/lib/python3/dist-packages/libtbx/command_line/phil.py usr/lib/python3/dist-packages/libtbx/command_line/prime_factors_of.py usr/lib/python3/dist-packages/libtbx/command_line/printenv.py usr/lib/python3/dist-packages/libtbx/command_line/py_compile_all.py usr/lib/python3/dist-packages/libtbx/command_line/raise_exception_for_testing.py usr/lib/python3/dist-packages/libtbx/command_line/refresh.bat usr/lib/python3/dist-packages/libtbx/command_line/refresh.sh usr/lib/python3/dist-packages/libtbx/command_line/reindent.py usr/lib/python3/dist-packages/libtbx/command_line/remote_processing.py usr/lib/python3/dist-packages/libtbx/command_line/remove_tree.py usr/lib/python3/dist-packages/libtbx/command_line/remove_unused_imports.py usr/lib/python3/dist-packages/libtbx/command_line/resource_monitor_plot.py usr/lib/python3/dist-packages/libtbx/command_line/run_pickled_function.py usr/lib/python3/dist-packages/libtbx/command_line/run_tests_parallel.py usr/lib/python3/dist-packages/libtbx/command_line/scons.py usr/lib/python3/dist-packages/libtbx/command_line/seconds_since_the_epoch.py usr/lib/python3/dist-packages/libtbx/command_line/sge_available_slots.py usr/lib/python3/dist-packages/libtbx/command_line/sge_qstat_counts.py usr/lib/python3/dist-packages/libtbx/command_line/sh.sh usr/lib/python3/dist-packages/libtbx/command_line/show_all_on_path.py usr/lib/python3/dist-packages/libtbx/command_line/show_bin_path.py usr/lib/python3/dist-packages/libtbx/command_line/show_build_options.py usr/lib/python3/dist-packages/libtbx/command_line/show_build_path.py usr/lib/python3/dist-packages/libtbx/command_line/show_but_no_repr.py usr/lib/python3/dist-packages/libtbx/command_line/show_commands.py usr/lib/python3/dist-packages/libtbx/command_line/show_date_and_time.py usr/lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py usr/lib/python3/dist-packages/libtbx/command_line/show_env.py usr/lib/python3/dist-packages/libtbx/command_line/show_environ_usage.py usr/lib/python3/dist-packages/libtbx/command_line/show_full_command_path.py usr/lib/python3/dist-packages/libtbx/command_line/show_host_and_user.py usr/lib/python3/dist-packages/libtbx/command_line/show_include_paths.py usr/lib/python3/dist-packages/libtbx/command_line/show_lib_path.py usr/lib/python3/dist-packages/libtbx/command_line/show_module_dependencies.py usr/lib/python3/dist-packages/libtbx/command_line/show_number_of_processors.py usr/lib/python3/dist-packages/libtbx/command_line/show_numeric_version.py usr/lib/python3/dist-packages/libtbx/command_line/show_numpy_version.py usr/lib/python3/dist-packages/libtbx/command_line/show_python_dependencies.py usr/lib/python3/dist-packages/libtbx/command_line/show_python_sys_executable.py usr/lib/python3/dist-packages/libtbx/command_line/show_pythonpath.py usr/lib/python3/dist-packages/libtbx/command_line/show_repository_paths.py usr/lib/python3/dist-packages/libtbx/command_line/show_tests.py usr/lib/python3/dist-packages/libtbx/command_line/show_variable_names.py usr/lib/python3/dist-packages/libtbx/command_line/sphinx_build.py usr/lib/python3/dist-packages/libtbx/command_line/start_binary_bundle.py usr/lib/python3/dist-packages/libtbx/command_line/start_process.py usr/lib/python3/dist-packages/libtbx/command_line/tcsh.sh usr/lib/python3/dist-packages/libtbx/command_line/unpack_in_sources.csh usr/lib/python3/dist-packages/libtbx/command_line/valgrind.sh usr/lib/python3/dist-packages/libtbx/command_line/wait_for_file.py usr/lib/python3/dist-packages/libtbx/complex_math.py usr/lib/python3/dist-packages/libtbx/configure.py usr/lib/python3/dist-packages/libtbx/console_utils.py usr/lib/python3/dist-packages/libtbx/containers.py usr/lib/python3/dist-packages/libtbx/cpp_function_name.py usr/lib/python3/dist-packages/libtbx/crossmingw.py usr/lib/python3/dist-packages/libtbx/development usr/lib/python3/dist-packages/libtbx/development/__init__.py usr/lib/python3/dist-packages/libtbx/development/except_Exception.py usr/lib/python3/dist-packages/libtbx/development/timers.py usr/lib/python3/dist-packages/libtbx/development/xcode_build_phase.py usr/lib/python3/dist-packages/libtbx/dlite.py usr/lib/python3/dist-packages/libtbx/easy_mp.py usr/lib/python3/dist-packages/libtbx/easy_pickle.py usr/lib/python3/dist-packages/libtbx/easy_profile.py usr/lib/python3/dist-packages/libtbx/easy_run.py usr/lib/python3/dist-packages/libtbx/env_config.py usr/lib/python3/dist-packages/libtbx/file_clutter.py usr/lib/python3/dist-packages/libtbx/find_reference_cycles.py usr/lib/python3/dist-packages/libtbx/forward_compatibility.py usr/lib/python3/dist-packages/libtbx/introspection.py usr/lib/python3/dist-packages/libtbx/langchain usr/lib/python3/dist-packages/libtbx/langchain/__init__.py usr/lib/python3/dist-packages/libtbx/langchain/agent usr/lib/python3/dist-packages/libtbx/langchain/agent/__init__.py usr/lib/python3/dist-packages/libtbx/langchain/agent/advice_preprocessor.py usr/lib/python3/dist-packages/libtbx/langchain/agent/api_client.py usr/lib/python3/dist-packages/libtbx/langchain/agent/best_files_tracker.py usr/lib/python3/dist-packages/libtbx/langchain/agent/command_builder.py usr/lib/python3/dist-packages/libtbx/langchain/agent/command_postprocessor.py usr/lib/python3/dist-packages/libtbx/langchain/agent/config_loader.py usr/lib/python3/dist-packages/libtbx/langchain/agent/contract.py usr/lib/python3/dist-packages/libtbx/langchain/agent/directive_extractor.py usr/lib/python3/dist-packages/libtbx/langchain/agent/directive_validator.py usr/lib/python3/dist-packages/libtbx/langchain/agent/display_data_model.py usr/lib/python3/dist-packages/libtbx/langchain/agent/docs_tools.py usr/lib/python3/dist-packages/libtbx/langchain/agent/dry_run_manager.py usr/lib/python3/dist-packages/libtbx/langchain/agent/error_analyzer.py usr/lib/python3/dist-packages/libtbx/langchain/agent/error_classifier.py usr/lib/python3/dist-packages/libtbx/langchain/agent/event_formatter.py usr/lib/python3/dist-packages/libtbx/langchain/agent/event_log.py usr/lib/python3/dist-packages/libtbx/langchain/agent/failure_diagnoser.py usr/lib/python3/dist-packages/libtbx/langchain/agent/file_metadata.py usr/lib/python3/dist-packages/libtbx/langchain/agent/file_utils.py usr/lib/python3/dist-packages/libtbx/langchain/agent/format_validation.py usr/lib/python3/dist-packages/libtbx/langchain/agent/gate_evaluator.py usr/lib/python3/dist-packages/libtbx/langchain/agent/generate_logic_doc.py usr/lib/python3/dist-packages/libtbx/langchain/agent/generate_safety_docs.py usr/lib/python3/dist-packages/libtbx/langchain/agent/graph.py usr/lib/python3/dist-packages/libtbx/langchain/agent/graph_nodes.py usr/lib/python3/dist-packages/libtbx/langchain/agent/graph_state.py usr/lib/python3/dist-packages/libtbx/langchain/agent/hypothesis_evaluator.py usr/lib/python3/dist-packages/libtbx/langchain/agent/intent_classifier.py usr/lib/python3/dist-packages/libtbx/langchain/agent/kb_tags.py usr/lib/python3/dist-packages/libtbx/langchain/agent/log_section_extractor.py usr/lib/python3/dist-packages/libtbx/langchain/agent/memory.py usr/lib/python3/dist-packages/libtbx/langchain/agent/metric_evaluator.py usr/lib/python3/dist-packages/libtbx/langchain/agent/metrics_analyzer.py usr/lib/python3/dist-packages/libtbx/langchain/agent/nl_to_phil.py usr/lib/python3/dist-packages/libtbx/langchain/agent/pattern_manager.py usr/lib/python3/dist-packages/libtbx/langchain/agent/perceive_checks.py usr/lib/python3/dist-packages/libtbx/langchain/agent/phenix_utils.py usr/lib/python3/dist-packages/libtbx/langchain/agent/phil_validator.py usr/lib/python3/dist-packages/libtbx/langchain/agent/placement_checker.py usr/lib/python3/dist-packages/libtbx/langchain/agent/plan_generator.py usr/lib/python3/dist-packages/libtbx/langchain/agent/planner.py usr/lib/python3/dist-packages/libtbx/langchain/agent/program_registry.py usr/lib/python3/dist-packages/libtbx/langchain/agent/program_validator.py usr/lib/python3/dist-packages/libtbx/langchain/agent/rate_limit_handler.py usr/lib/python3/dist-packages/libtbx/langchain/agent/rules_selector.py usr/lib/python3/dist-packages/libtbx/langchain/agent/sanity_checker.py usr/lib/python3/dist-packages/libtbx/langchain/agent/session.py usr/lib/python3/dist-packages/libtbx/langchain/agent/session_tools.py usr/lib/python3/dist-packages/libtbx/langchain/agent/strategy_memory.py usr/lib/python3/dist-packages/libtbx/langchain/agent/structure_model.py usr/lib/python3/dist-packages/libtbx/langchain/agent/template_builder.py usr/lib/python3/dist-packages/libtbx/langchain/agent/thinking_agent.py usr/lib/python3/dist-packages/libtbx/langchain/agent/transport.py usr/lib/python3/dist-packages/libtbx/langchain/agent/tst_agent_enhancements.py usr/lib/python3/dist-packages/libtbx/langchain/agent/utils.py usr/lib/python3/dist-packages/libtbx/langchain/agent/validation_history.py usr/lib/python3/dist-packages/libtbx/langchain/agent/validation_inspector.py usr/lib/python3/dist-packages/libtbx/langchain/agent/workflow_engine.py usr/lib/python3/dist-packages/libtbx/langchain/agent/workflow_state.py usr/lib/python3/dist-packages/libtbx/langchain/agent/yaml_tools.py usr/lib/python3/dist-packages/libtbx/langchain/analysis usr/lib/python3/dist-packages/libtbx/langchain/analysis/__init__.py usr/lib/python3/dist-packages/libtbx/langchain/analysis/agent_session_analyzer.py usr/lib/python3/dist-packages/libtbx/langchain/analysis/analyzer.py usr/lib/python3/dist-packages/libtbx/langchain/analysis/log_info.py usr/lib/python3/dist-packages/libtbx/langchain/analysis/state_extractor.py usr/lib/python3/dist-packages/libtbx/langchain/analysis/summarizer.py usr/lib/python3/dist-packages/libtbx/langchain/commands usr/lib/python3/dist-packages/libtbx/langchain/commands/__init__.py usr/lib/python3/dist-packages/libtbx/langchain/commands/base.py usr/lib/python3/dist-packages/libtbx/langchain/core usr/lib/python3/dist-packages/libtbx/langchain/core/__init__.py usr/lib/python3/dist-packages/libtbx/langchain/core/llm.py usr/lib/python3/dist-packages/libtbx/langchain/core/types.py 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usr/lib/python3/dist-packages/libtbx/langchain/utils usr/lib/python3/dist-packages/libtbx/langchain/utils/__init__.py usr/lib/python3/dist-packages/libtbx/langchain/utils/query.py usr/lib/python3/dist-packages/libtbx/langchain/utils/run_utils.py usr/lib/python3/dist-packages/libtbx/langchain/utils/text_processing.py usr/lib/python3/dist-packages/libtbx/langchain/validation usr/lib/python3/dist-packages/libtbx/langchain/validation/__init__.py usr/lib/python3/dist-packages/libtbx/langchain/validation/base.py usr/lib/python3/dist-packages/libtbx/langchain/validation/core_validator.py usr/lib/python3/dist-packages/libtbx/langchain/validation/mtz_utils.py usr/lib/python3/dist-packages/libtbx/langchain/validation/phenix_refine.py usr/lib/python3/dist-packages/libtbx/langchain/validation/registry.py usr/lib/python3/dist-packages/libtbx/libtbx_refresh.py usr/lib/python3/dist-packages/libtbx/load_env.py usr/lib/python3/dist-packages/libtbx/log.py 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usr/lib/python3/dist-packages/libtbx/sphinx/python_string.py usr/lib/python3/dist-packages/libtbx/start_print_trace.py usr/lib/python3/dist-packages/libtbx/str_utils.py usr/lib/python3/dist-packages/libtbx/subprocess_with_fixes.py usr/lib/python3/dist-packages/libtbx/table_utils.py usr/lib/python3/dist-packages/libtbx/test_utils usr/lib/python3/dist-packages/libtbx/test_utils/__init__.py usr/lib/python3/dist-packages/libtbx/test_utils/parallel.py usr/lib/python3/dist-packages/libtbx/thread_utils.py usr/lib/python3/dist-packages/libtbx/topological_sort.py usr/lib/python3/dist-packages/libtbx/try_hello_world_c.py usr/lib/python3/dist-packages/libtbx/tst_add_docstrings_with_ai.py usr/lib/python3/dist-packages/libtbx/tst_binary_search.py usr/lib/python3/dist-packages/libtbx/tst_citations.py usr/lib/python3/dist-packages/libtbx/tst_containers.py usr/lib/python3/dist-packages/libtbx/tst_dlite.py usr/lib/python3/dist-packages/libtbx/tst_easy_mp.py 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usr/lib/python3/dist-packages/mmtbx/building/loop_closure/ccd.py usr/lib/python3/dist-packages/mmtbx/building/loop_closure/starting_conformations.py usr/lib/python3/dist-packages/mmtbx/building/loop_closure/utils.py usr/lib/python3/dist-packages/mmtbx/building/loop_idealization.py usr/lib/python3/dist-packages/mmtbx/building/merge_models.py usr/lib/python3/dist-packages/mmtbx/building/minimize_chain.py usr/lib/python3/dist-packages/mmtbx/building/tst_extend_sidechains.py usr/lib/python3/dist-packages/mmtbx/building/tst_extend_sidechains_2.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent usr/lib/python3/dist-packages/mmtbx/bulk_solvent/__init__.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/example.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/example2.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/f_model_all_scales.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/kbu_refinery.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/mosaic.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/scaler.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/tst_aniso_scaler.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/tst_flat_nonuniform.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/tst_mosaic.py usr/lib/python3/dist-packages/mmtbx/bulk_solvent/tst_scaler.py usr/lib/python3/dist-packages/mmtbx/chemical_components usr/lib/python3/dist-packages/mmtbx/chemical_components/__init__.py usr/lib/python3/dist-packages/mmtbx/chemical_components/cif_parser.py usr/lib/python3/dist-packages/mmtbx/chemical_components/tst.py usr/lib/python3/dist-packages/mmtbx/clashes.py 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usr/lib/python3/dist-packages/mmtbx/command_line/clashscore2.py usr/lib/python3/dist-packages/mmtbx/command_line/comparama.py usr/lib/python3/dist-packages/mmtbx/command_line/debug_riding.py usr/lib/python3/dist-packages/mmtbx/command_line/density_modification.py usr/lib/python3/dist-packages/mmtbx/command_line/development_aev.py usr/lib/python3/dist-packages/mmtbx/command_line/development_fem.py usr/lib/python3/dist-packages/mmtbx/command_line/distance_difference.py usr/lib/python3/dist-packages/mmtbx/command_line/dynamics.py usr/lib/python3/dist-packages/mmtbx/command_line/electrons.py usr/lib/python3/dist-packages/mmtbx/command_line/emringer.py usr/lib/python3/dist-packages/mmtbx/command_line/emringer_score.py usr/lib/python3/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py usr/lib/python3/dist-packages/mmtbx/command_line/f000.py usr/lib/python3/dist-packages/mmtbx/command_line/fab_elbow_angle.py usr/lib/python3/dist-packages/mmtbx/command_line/fake_f_obs.py usr/lib/python3/dist-packages/mmtbx/command_line/fetch_pdb.py usr/lib/python3/dist-packages/mmtbx/command_line/find_peaks_holes.py usr/lib/python3/dist-packages/mmtbx/command_line/find_residue_in_pdb.py usr/lib/python3/dist-packages/mmtbx/command_line/find_tls_groups.py usr/lib/python3/dist-packages/mmtbx/command_line/fmodel.py usr/lib/python3/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py usr/lib/python3/dist-packages/mmtbx/command_line/geometry_minimization.py usr/lib/python3/dist-packages/mmtbx/command_line/grow_density.py usr/lib/python3/dist-packages/mmtbx/command_line/hbond.py usr/lib/python3/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py usr/lib/python3/dist-packages/mmtbx/command_line/holton_geometry_validation.py usr/lib/python3/dist-packages/mmtbx/command_line/hydrogenate.py usr/lib/python3/dist-packages/mmtbx/command_line/kinemage.py usr/lib/python3/dist-packages/mmtbx/command_line/ligand_restraints_validation.py usr/lib/python3/dist-packages/mmtbx/command_line/map_box.py usr/lib/python3/dist-packages/mmtbx/command_line/map_comparison.py usr/lib/python3/dist-packages/mmtbx/command_line/map_to_model_histogram.py usr/lib/python3/dist-packages/mmtbx/command_line/map_to_structure_factors.py usr/lib/python3/dist-packages/mmtbx/command_line/maps.py usr/lib/python3/dist-packages/mmtbx/command_line/mask.py usr/lib/python3/dist-packages/mmtbx/command_line/massage_data.py usr/lib/python3/dist-packages/mmtbx/command_line/matthews.py usr/lib/python3/dist-packages/mmtbx/command_line/maximum_entropy_map.py usr/lib/python3/dist-packages/mmtbx/command_line/model_idealization.py usr/lib/python3/dist-packages/mmtbx/command_line/model_map.py usr/lib/python3/dist-packages/mmtbx/command_line/model_model_distances.py usr/lib/python3/dist-packages/mmtbx/command_line/model_vs_data.py usr/lib/python3/dist-packages/mmtbx/command_line/model_vs_map.py usr/lib/python3/dist-packages/mmtbx/command_line/model_vs_sequence.py usr/lib/python3/dist-packages/mmtbx/command_line/models_as_chains.py usr/lib/python3/dist-packages/mmtbx/command_line/molprobity.py usr/lib/python3/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py usr/lib/python3/dist-packages/mmtbx/command_line/mp_geo.py usr/lib/python3/dist-packages/mmtbx/command_line/mp_validate_bonds.py usr/lib/python3/dist-packages/mmtbx/command_line/mtz2map.py usr/lib/python3/dist-packages/mmtbx/command_line/next_gen_atom_typing.py usr/lib/python3/dist-packages/mmtbx/command_line/nonbonded_overlaps.py usr/lib/python3/dist-packages/mmtbx/command_line/omegalyze.py usr/lib/python3/dist-packages/mmtbx/command_line/pdb_atom_selection.py usr/lib/python3/dist-packages/mmtbx/command_line/pdb_interpretation.py usr/lib/python3/dist-packages/mmtbx/command_line/pdbtools.py usr/lib/python3/dist-packages/mmtbx/command_line/perigee.py usr/lib/python3/dist-packages/mmtbx/command_line/plan_sad_experiment.py usr/lib/python3/dist-packages/mmtbx/command_line/polder.py usr/lib/python3/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py usr/lib/python3/dist-packages/mmtbx/command_line/probe2.py usr/lib/python3/dist-packages/mmtbx/command_line/probescore_ligand.py usr/lib/python3/dist-packages/mmtbx/command_line/process_predicted_model.py usr/lib/python3/dist-packages/mmtbx/command_line/prune_model.py usr/lib/python3/dist-packages/mmtbx/command_line/quantum_interface.py usr/lib/python3/dist-packages/mmtbx/command_line/r_factor_statistics.py usr/lib/python3/dist-packages/mmtbx/command_line/rama_z.py usr/lib/python3/dist-packages/mmtbx/command_line/ramalyze.py usr/lib/python3/dist-packages/mmtbx/command_line/rank_scale_map.py usr/lib/python3/dist-packages/mmtbx/command_line/real_space_correlation.py usr/lib/python3/dist-packages/mmtbx/command_line/real_space_diff_map.py usr/lib/python3/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py usr/lib/python3/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py usr/lib/python3/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py usr/lib/python3/dist-packages/mmtbx/command_line/reduce2.py usr/lib/python3/dist-packages/mmtbx/command_line/reduce_cryoem_resolution.py usr/lib/python3/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py usr/lib/python3/dist-packages/mmtbx/command_line/remove_outliers.py usr/lib/python3/dist-packages/mmtbx/command_line/ribbons.py usr/lib/python3/dist-packages/mmtbx/command_line/rigid_bond_test.py usr/lib/python3/dist-packages/mmtbx/command_line/ringer.py usr/lib/python3/dist-packages/mmtbx/command_line/rna_validate.py usr/lib/python3/dist-packages/mmtbx/command_line/rna_validate_bonds.py usr/lib/python3/dist-packages/mmtbx/command_line/rna_validate_puckers.py usr/lib/python3/dist-packages/mmtbx/command_line/rna_validate_suites.py usr/lib/python3/dist-packages/mmtbx/command_line/rotalyze.py usr/lib/python3/dist-packages/mmtbx/command_line/search_pdb_symmetry.py usr/lib/python3/dist-packages/mmtbx/command_line/secondary_structure_restraints.py usr/lib/python3/dist-packages/mmtbx/command_line/secondary_structure_validation.py usr/lib/python3/dist-packages/mmtbx/command_line/select_best_starting_model.py usr/lib/python3/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py usr/lib/python3/dist-packages/mmtbx/command_line/sisa.py usr/lib/python3/dist-packages/mmtbx/command_line/sort_hetatms.py usr/lib/python3/dist-packages/mmtbx/command_line/ss_idealization.py usr/lib/python3/dist-packages/mmtbx/command_line/suitename.py usr/lib/python3/dist-packages/mmtbx/command_line/suitename_old.py usr/lib/python3/dist-packages/mmtbx/command_line/super.py usr/lib/python3/dist-packages/mmtbx/command_line/superpose.py usr/lib/python3/dist-packages/mmtbx/command_line/taam_minus_iam.py usr/lib/python3/dist-packages/mmtbx/command_line/table_one.py usr/lib/python3/dist-packages/mmtbx/command_line/tls.py usr/lib/python3/dist-packages/mmtbx/command_line/tls_analysis.py usr/lib/python3/dist-packages/mmtbx/command_line/tls_as_xyz.py usr/lib/python3/dist-packages/mmtbx/command_line/undowser.py usr/lib/python3/dist-packages/mmtbx/command_line/undowser2.py usr/lib/python3/dist-packages/mmtbx/command_line/validate_H_cl_app.py usr/lib/python3/dist-packages/mmtbx/command_line/validate_ligands.py usr/lib/python3/dist-packages/mmtbx/command_line/validation_summary.py usr/lib/python3/dist-packages/mmtbx/command_line/verify_mon_lib_data.py usr/lib/python3/dist-packages/mmtbx/command_line/water_b_factors.py usr/lib/python3/dist-packages/mmtbx/command_line/where_is_that_cif_file.py usr/lib/python3/dist-packages/mmtbx/command_line/xmanip.py usr/lib/python3/dist-packages/mmtbx/command_line/xtrapol8.py usr/lib/python3/dist-packages/mmtbx/command_line/xtriage.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/LinkedResidues.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/__init__.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/altloc_weighting.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/bond_angle_registry.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/cdl_database.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/cdl_setup.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/cdl_svl_database.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/cdl_utils.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/check_cdl_database.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/density_dependent_restraints.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/enol_peptide_restraints.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/histidines.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/hpdl_database.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/hydrogen_bonding.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/investigate_rotamer_space.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/mcl.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/metal_coordination_library.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/multi_base_class.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/multi_residue_class.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/nucleotides.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/omega.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/omega_database.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/pH_dependent_restraints.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/rdl_database.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/rotamers.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/sf4_restraints.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/testing_utils.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_cdl.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_esd.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_enol_peptide.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_hpdl.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_01.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_02.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_03.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_mutli_residue.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_omega_cdl.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_pH_mechanism.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_rdl.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py usr/lib/python3/dist-packages/mmtbx/conformation_dependent_library/utils.py usr/lib/python3/dist-packages/mmtbx/den usr/lib/python3/dist-packages/mmtbx/den/__init__.py usr/lib/python3/dist-packages/mmtbx/den/plot_weights.py usr/lib/python3/dist-packages/mmtbx/den/refinement.py usr/lib/python3/dist-packages/mmtbx/density_modification usr/lib/python3/dist-packages/mmtbx/density_modification/__init__.py usr/lib/python3/dist-packages/mmtbx/density_modification/tst_density_modification.py usr/lib/python3/dist-packages/mmtbx/disorder usr/lib/python3/dist-packages/mmtbx/disorder/__init__.py usr/lib/python3/dist-packages/mmtbx/disorder/analyze_model.py usr/lib/python3/dist-packages/mmtbx/disorder/backbone.py usr/lib/python3/dist-packages/mmtbx/disorder/tst.py usr/lib/python3/dist-packages/mmtbx/disorder/tst_analyze_model.py usr/lib/python3/dist-packages/mmtbx/disorder/tst_backbone.py usr/lib/python3/dist-packages/mmtbx/domains_from_pae.py usr/lib/python3/dist-packages/mmtbx/dynamics usr/lib/python3/dist-packages/mmtbx/dynamics/__init__.py usr/lib/python3/dist-packages/mmtbx/dynamics/cartesian_dynamics.py usr/lib/python3/dist-packages/mmtbx/dynamics/constants.py usr/lib/python3/dist-packages/mmtbx/dynamics/ensemble_cd.py usr/lib/python3/dist-packages/mmtbx/dynamics/simulated_annealing.py usr/lib/python3/dist-packages/mmtbx/dynamics/tst_cartesian_dynamics.py usr/lib/python3/dist-packages/mmtbx/dynamics/tst_sa.py usr/lib/python3/dist-packages/mmtbx/f_model usr/lib/python3/dist-packages/mmtbx/f_model/__init__.py usr/lib/python3/dist-packages/mmtbx/f_model/f_model.py usr/lib/python3/dist-packages/mmtbx/f_model/f_model_info.py usr/lib/python3/dist-packages/mmtbx/f_model_info.py usr/lib/python3/dist-packages/mmtbx/find_peaks.py usr/lib/python3/dist-packages/mmtbx/geometry usr/lib/python3/dist-packages/mmtbx/geometry/__init__.py usr/lib/python3/dist-packages/mmtbx/geometry/altloc.py usr/lib/python3/dist-packages/mmtbx/geometry/asa.py usr/lib/python3/dist-packages/mmtbx/geometry/clash.py usr/lib/python3/dist-packages/mmtbx/geometry/indexing.py usr/lib/python3/dist-packages/mmtbx/geometry/shared_types.py usr/lib/python3/dist-packages/mmtbx/geometry/sphere_surface_sampling.py usr/lib/python3/dist-packages/mmtbx/geometry/tests usr/lib/python3/dist-packages/mmtbx/geometry/tests/tst_altloc.py usr/lib/python3/dist-packages/mmtbx/geometry/tests/tst_asa.py usr/lib/python3/dist-packages/mmtbx/geometry/tests/tst_clash.py usr/lib/python3/dist-packages/mmtbx/geometry/tests/tst_indexing.py usr/lib/python3/dist-packages/mmtbx/geometry/tests/tst_shared_types.py usr/lib/python3/dist-packages/mmtbx/geometry/tests/tst_sphere_surface_sampling.py usr/lib/python3/dist-packages/mmtbx/geometry/tests/tst_topology.py usr/lib/python3/dist-packages/mmtbx/geometry/topology.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints usr/lib/python3/dist-packages/mmtbx/geometry_restraints/__init__.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/afitt.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/base_qm_manager.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/c_beta.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/external.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/geo_file_parsing.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/mopac_manager.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/orca_manager.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/qi_utils.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/qm_manager.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/quantum_interface.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/quantum_restraints_manager.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/ramachandran.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/reference.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/torsion_restraints usr/lib/python3/dist-packages/mmtbx/geometry_restraints/torsion_restraints/__init__.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/torsion_restraints/reference_model.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/torsion_restraints/utils.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/tst_c_beta_restraints.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/tst_geo_file_parsing.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/tst_manager.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/tst_ramachandran.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate.py usr/lib/python3/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate2.py usr/lib/python3/dist-packages/mmtbx/grow_density.py usr/lib/python3/dist-packages/mmtbx/hydrogens usr/lib/python3/dist-packages/mmtbx/hydrogens/__init__.py usr/lib/python3/dist-packages/mmtbx/hydrogens/build_hydrogens.py usr/lib/python3/dist-packages/mmtbx/hydrogens/connectivity.py usr/lib/python3/dist-packages/mmtbx/hydrogens/find.py usr/lib/python3/dist-packages/mmtbx/hydrogens/neutron_utils.py usr/lib/python3/dist-packages/mmtbx/hydrogens/parameterization.py usr/lib/python3/dist-packages/mmtbx/hydrogens/reduce_hydrogen.py usr/lib/python3/dist-packages/mmtbx/hydrogens/riding.py usr/lib/python3/dist-packages/mmtbx/hydrogens/specialised_hydrogen_atoms.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_add_hydrogen.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_0.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_1.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_2.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_3.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_4.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_5.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_6.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_7.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_8.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_9.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_time.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_connectivity.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_parameterization_1.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_parameterization_2.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_parameterization_3.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_parameterization_4.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_parameterization_5.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_parameterization_6.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_parameterization_7.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_parameterization_8.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_parameterization_9.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_riding_coefficients.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_riding_fd_1.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_riding_fd_2.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_riding_fd_3.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_riding_fd_4.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_riding_fd_5.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_riding_manager.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_riding_minimize.py usr/lib/python3/dist-packages/mmtbx/hydrogens/tst_validate_H.py usr/lib/python3/dist-packages/mmtbx/hydrogens/validate_H.py usr/lib/python3/dist-packages/mmtbx/ias usr/lib/python3/dist-packages/mmtbx/ias/__init__.py usr/lib/python3/dist-packages/mmtbx/ias/tst_ias.py usr/lib/python3/dist-packages/mmtbx/idealized_aa_residues usr/lib/python3/dist-packages/mmtbx/idealized_aa_residues/__init__.py usr/lib/python3/dist-packages/mmtbx/idealized_aa_residues/all_his.py usr/lib/python3/dist-packages/mmtbx/idealized_aa_residues/rotamer_manager.py usr/lib/python3/dist-packages/mmtbx/idealized_aa_residues/sample_rotamers.py usr/lib/python3/dist-packages/mmtbx/idealized_aa_residues/tst.py usr/lib/python3/dist-packages/mmtbx/invariant_domain.py usr/lib/python3/dist-packages/mmtbx/ions usr/lib/python3/dist-packages/mmtbx/ions/__init__.py usr/lib/python3/dist-packages/mmtbx/ions/build.py usr/lib/python3/dist-packages/mmtbx/ions/environment.py usr/lib/python3/dist-packages/mmtbx/ions/geometry.py usr/lib/python3/dist-packages/mmtbx/ions/halides.py usr/lib/python3/dist-packages/mmtbx/ions/identify.py usr/lib/python3/dist-packages/mmtbx/ions/svm usr/lib/python3/dist-packages/mmtbx/ions/svm/__init__.py usr/lib/python3/dist-packages/mmtbx/ions/svm/dump_sites.py usr/lib/python3/dist-packages/mmtbx/ions/svm/tst_classifier_01.py usr/lib/python3/dist-packages/mmtbx/ions/svm/tst_classifier_02.py usr/lib/python3/dist-packages/mmtbx/ions/svm/utils.py usr/lib/python3/dist-packages/mmtbx/ions/tst_environment.py usr/lib/python3/dist-packages/mmtbx/ions/tst_geometries.py usr/lib/python3/dist-packages/mmtbx/ions/tst_parameters.py usr/lib/python3/dist-packages/mmtbx/ions/tst_pick_approx_zn.py usr/lib/python3/dist-packages/mmtbx/ions/tst_pick_ca.py usr/lib/python3/dist-packages/mmtbx/ions/tst_pick_ca_svm.py usr/lib/python3/dist-packages/mmtbx/ions/tst_pick_k.py usr/lib/python3/dist-packages/mmtbx/ions/tst_pick_mg.py usr/lib/python3/dist-packages/mmtbx/ions/tst_pickle.py usr/lib/python3/dist-packages/mmtbx/ions/tst_symmetry_axis.py usr/lib/python3/dist-packages/mmtbx/ions/tst_utils.py usr/lib/python3/dist-packages/mmtbx/ions/tst_validate_ca.py usr/lib/python3/dist-packages/mmtbx/ions/tst_validate_mg.py usr/lib/python3/dist-packages/mmtbx/ions/utils.py usr/lib/python3/dist-packages/mmtbx/kinemage usr/lib/python3/dist-packages/mmtbx/kinemage/__init__.py usr/lib/python3/dist-packages/mmtbx/kinemage/nrubs.py usr/lib/python3/dist-packages/mmtbx/kinemage/ribbons.py usr/lib/python3/dist-packages/mmtbx/kinemage/validation.py usr/lib/python3/dist-packages/mmtbx/lattice.py usr/lib/python3/dist-packages/mmtbx/libtbx_refresh.py usr/lib/python3/dist-packages/mmtbx/ligands usr/lib/python3/dist-packages/mmtbx/ligands/__init__.py usr/lib/python3/dist-packages/mmtbx/ligands/chemistry.py usr/lib/python3/dist-packages/mmtbx/ligands/elbow_utils.py usr/lib/python3/dist-packages/mmtbx/ligands/electrons.py usr/lib/python3/dist-packages/mmtbx/ligands/hierarchy_utils.py usr/lib/python3/dist-packages/mmtbx/ligands/rdkit_utils.py usr/lib/python3/dist-packages/mmtbx/ligands/ready_set_basics.py usr/lib/python3/dist-packages/mmtbx/ligands/ready_set_utils.py usr/lib/python3/dist-packages/mmtbx/ligands/tst_electron_scripting.py usr/lib/python3/dist-packages/mmtbx/ligands/tst_ready_set_utils.py usr/lib/python3/dist-packages/mmtbx/ligands/tst_xtal_screens.py usr/lib/python3/dist-packages/mmtbx/ligands/xtal_screens.py usr/lib/python3/dist-packages/mmtbx/map_tools.py usr/lib/python3/dist-packages/mmtbx/maps usr/lib/python3/dist-packages/mmtbx/maps/__init__.py usr/lib/python3/dist-packages/mmtbx/maps/composite_omit_map.py usr/lib/python3/dist-packages/mmtbx/maps/correlation.py usr/lib/python3/dist-packages/mmtbx/maps/fem.py usr/lib/python3/dist-packages/mmtbx/maps/fobs_minus_fobs_map.py usr/lib/python3/dist-packages/mmtbx/maps/kick.py usr/lib/python3/dist-packages/mmtbx/maps/map_model_cc.py usr/lib/python3/dist-packages/mmtbx/maps/mtriage.py usr/lib/python3/dist-packages/mmtbx/maps/polder.py usr/lib/python3/dist-packages/mmtbx/maps/superpose.py usr/lib/python3/dist-packages/mmtbx/maps/tst_composite_omit_map.py usr/lib/python3/dist-packages/mmtbx/maps/tst_composite_omit_map_2.py usr/lib/python3/dist-packages/mmtbx/maps/tst_composite_omit_map_3.py usr/lib/python3/dist-packages/mmtbx/maps/tst_correlation.py usr/lib/python3/dist-packages/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py usr/lib/python3/dist-packages/mmtbx/maps/utils.py usr/lib/python3/dist-packages/mmtbx/maps/xtrapol8.py usr/lib/python3/dist-packages/mmtbx/masks usr/lib/python3/dist-packages/mmtbx/masks/__init__.py usr/lib/python3/dist-packages/mmtbx/masks/tst_asu_mask.py usr/lib/python3/dist-packages/mmtbx/masks/tst_mask.cpp usr/lib/python3/dist-packages/mmtbx/masks/tst_masks.py usr/lib/python3/dist-packages/mmtbx/max_lik usr/lib/python3/dist-packages/mmtbx/max_lik/__init__.py usr/lib/python3/dist-packages/mmtbx/max_lik/max_like_non_uniform.py usr/lib/python3/dist-packages/mmtbx/max_lik/maxlik.py usr/lib/python3/dist-packages/mmtbx/max_lik/tst_max_lik.py usr/lib/python3/dist-packages/mmtbx/max_lik/tst_maxlik.py usr/lib/python3/dist-packages/mmtbx/model usr/lib/python3/dist-packages/mmtbx/model/__init__.py usr/lib/python3/dist-packages/mmtbx/model/model.py usr/lib/python3/dist-packages/mmtbx/model/restraints.py usr/lib/python3/dist-packages/mmtbx/model/statistics.py usr/lib/python3/dist-packages/mmtbx/model/utils.py usr/lib/python3/dist-packages/mmtbx/model_vs_data.py usr/lib/python3/dist-packages/mmtbx/monomer_library usr/lib/python3/dist-packages/mmtbx/monomer_library/__init__.py usr/lib/python3/dist-packages/mmtbx/monomer_library/bondlength_defaults.py usr/lib/python3/dist-packages/mmtbx/monomer_library/cif_triage.py usr/lib/python3/dist-packages/mmtbx/monomer_library/cif_types.py usr/lib/python3/dist-packages/mmtbx/monomer_library/conformation_dependent_restraints.py usr/lib/python3/dist-packages/mmtbx/monomer_library/conv_v2_v3.py usr/lib/python3/dist-packages/mmtbx/monomer_library/correct_hydrogen_geometries.py usr/lib/python3/dist-packages/mmtbx/monomer_library/geostd_utils.py usr/lib/python3/dist-packages/mmtbx/monomer_library/glyco_chiral_values.py usr/lib/python3/dist-packages/mmtbx/monomer_library/glyco_utils.py usr/lib/python3/dist-packages/mmtbx/monomer_library/hydrogen_restrictions.py usr/lib/python3/dist-packages/mmtbx/monomer_library/idealized_aa.py usr/lib/python3/dist-packages/mmtbx/monomer_library/linking_mixins.py usr/lib/python3/dist-packages/mmtbx/monomer_library/linking_setup.py usr/lib/python3/dist-packages/mmtbx/monomer_library/linking_utils.py usr/lib/python3/dist-packages/mmtbx/monomer_library/mmtbx_utils.py usr/lib/python3/dist-packages/mmtbx/monomer_library/pdb_interpretation.py usr/lib/python3/dist-packages/mmtbx/monomer_library/populate_auto_linking_origin_ids.py usr/lib/python3/dist-packages/mmtbx/monomer_library/rna_sugar_pucker_analysis.py usr/lib/python3/dist-packages/mmtbx/monomer_library/rotamer_utils.py usr/lib/python3/dist-packages/mmtbx/monomer_library/server.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_all_cif_files.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_carbo_linking.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_chg.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_cif_triage.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_cif_types.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_correct_hydrogens.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_deuterium_terminii.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_glyco_coordination.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_glyco_hand.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_idealized_aa.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_iron_sulfur_clusters.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_linking.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_metal_coordination.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_motif.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_neutron_distance.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_paral_geo.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_2.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_3.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_4.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_5.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_protein_interpretation.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_rna_dna_interpretation.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_rotamer_utils.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_selection.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_server.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_superpose_ideal.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py usr/lib/python3/dist-packages/mmtbx/monomer_library/tst_user_supplied_library.py usr/lib/python3/dist-packages/mmtbx/msa.py usr/lib/python3/dist-packages/mmtbx/nci usr/lib/python3/dist-packages/mmtbx/nci/__init__.py usr/lib/python3/dist-packages/mmtbx/nci/data_filtering.py usr/lib/python3/dist-packages/mmtbx/nci/hbond.py usr/lib/python3/dist-packages/mmtbx/nci/skew_kurt_plot.py usr/lib/python3/dist-packages/mmtbx/nci/tst_hbond.py usr/lib/python3/dist-packages/mmtbx/ncs usr/lib/python3/dist-packages/mmtbx/ncs/__init__.py usr/lib/python3/dist-packages/mmtbx/ncs/cartesian_restraints.py usr/lib/python3/dist-packages/mmtbx/ncs/ligands.py usr/lib/python3/dist-packages/mmtbx/ncs/ncs.py usr/lib/python3/dist-packages/mmtbx/ncs/ncs_params.py usr/lib/python3/dist-packages/mmtbx/ncs/ncs_restraints_group_list.py usr/lib/python3/dist-packages/mmtbx/ncs/ncs_search.py usr/lib/python3/dist-packages/mmtbx/ncs/ncs_utils.py usr/lib/python3/dist-packages/mmtbx/ncs/tncs.py usr/lib/python3/dist-packages/mmtbx/pair_interaction usr/lib/python3/dist-packages/mmtbx/pair_interaction/__init__.py usr/lib/python3/dist-packages/mmtbx/pair_interaction/pair_interaction.py usr/lib/python3/dist-packages/mmtbx/pair_interaction/tst_00.py usr/lib/python3/dist-packages/mmtbx/pair_interaction/tst_01.py usr/lib/python3/dist-packages/mmtbx/pair_interaction/tst_02.py usr/lib/python3/dist-packages/mmtbx/pair_interaction/tst_03.py usr/lib/python3/dist-packages/mmtbx/pair_interaction/tst_04.py usr/lib/python3/dist-packages/mmtbx/pair_interaction/tst_05.py usr/lib/python3/dist-packages/mmtbx/pdb_distances.py usr/lib/python3/dist-packages/mmtbx/pdb_symmetry.py usr/lib/python3/dist-packages/mmtbx/pdbtools.py usr/lib/python3/dist-packages/mmtbx/polygon usr/lib/python3/dist-packages/mmtbx/polygon/__init__.py usr/lib/python3/dist-packages/mmtbx/polygon/output.py usr/lib/python3/dist-packages/mmtbx/polygon/tst.py usr/lib/python3/dist-packages/mmtbx/polygon/tst_gui.py usr/lib/python3/dist-packages/mmtbx/polygon/tst_polygon_data.py usr/lib/python3/dist-packages/mmtbx/probe usr/lib/python3/dist-packages/mmtbx/probe/AtomTypes.py usr/lib/python3/dist-packages/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py usr/lib/python3/dist-packages/mmtbx/probe/Helpers.py usr/lib/python3/dist-packages/mmtbx/probe/__init__.py usr/lib/python3/dist-packages/mmtbx/probe/tst_mmtbx_probe_ext.py usr/lib/python3/dist-packages/mmtbx/probe/tst_probe.cpp usr/lib/python3/dist-packages/mmtbx/process_predicted_model.py usr/lib/python3/dist-packages/mmtbx/programs usr/lib/python3/dist-packages/mmtbx/programs/__init__.py usr/lib/python3/dist-packages/mmtbx/programs/arginine_geometry.py usr/lib/python3/dist-packages/mmtbx/programs/atom_selection.py usr/lib/python3/dist-packages/mmtbx/programs/atom_valence_simple.py usr/lib/python3/dist-packages/mmtbx/programs/barbed_wire_analysis.py usr/lib/python3/dist-packages/mmtbx/programs/cablam.py usr/lib/python3/dist-packages/mmtbx/programs/cablam_idealization.py usr/lib/python3/dist-packages/mmtbx/programs/cbetadev.py usr/lib/python3/dist-packages/mmtbx/programs/chiral_validation.py usr/lib/python3/dist-packages/mmtbx/programs/clashscore.py usr/lib/python3/dist-packages/mmtbx/programs/clashscore2.py usr/lib/python3/dist-packages/mmtbx/programs/comparama.py usr/lib/python3/dist-packages/mmtbx/programs/debug_riding.py usr/lib/python3/dist-packages/mmtbx/programs/elbow_services.py usr/lib/python3/dist-packages/mmtbx/programs/emringer.py usr/lib/python3/dist-packages/mmtbx/programs/fetch.py usr/lib/python3/dist-packages/mmtbx/programs/fmodel.py usr/lib/python3/dist-packages/mmtbx/programs/hbond.py usr/lib/python3/dist-packages/mmtbx/programs/holton_geometry_validation.py usr/lib/python3/dist-packages/mmtbx/programs/hydrogenate.py usr/lib/python3/dist-packages/mmtbx/programs/ligand_restraints_validation.py usr/lib/python3/dist-packages/mmtbx/programs/mask.py usr/lib/python3/dist-packages/mmtbx/programs/matthews.py usr/lib/python3/dist-packages/mmtbx/programs/model_vs_sequence.py usr/lib/python3/dist-packages/mmtbx/programs/mp_validate_bonds.py usr/lib/python3/dist-packages/mmtbx/programs/next_gen_atom_typing.py usr/lib/python3/dist-packages/mmtbx/programs/nonbonded_overlaps.py usr/lib/python3/dist-packages/mmtbx/programs/omegalyze.py usr/lib/python3/dist-packages/mmtbx/programs/pdb_as_cif.py usr/lib/python3/dist-packages/mmtbx/programs/pdbtools.py usr/lib/python3/dist-packages/mmtbx/programs/polder.py usr/lib/python3/dist-packages/mmtbx/programs/prepare_pdb_deposition.py usr/lib/python3/dist-packages/mmtbx/programs/probe2.py usr/lib/python3/dist-packages/mmtbx/programs/probescore_ligand.py usr/lib/python3/dist-packages/mmtbx/programs/process_predicted_model.py usr/lib/python3/dist-packages/mmtbx/programs/quantum_interface.py usr/lib/python3/dist-packages/mmtbx/programs/rama_z.py usr/lib/python3/dist-packages/mmtbx/programs/ramalyze.py usr/lib/python3/dist-packages/mmtbx/programs/real_space_correlation.py usr/lib/python3/dist-packages/mmtbx/programs/reduce2.py usr/lib/python3/dist-packages/mmtbx/programs/reduce_cryoem_resolution.py usr/lib/python3/dist-packages/mmtbx/programs/ribbons.py usr/lib/python3/dist-packages/mmtbx/programs/rna_validate.py usr/lib/python3/dist-packages/mmtbx/programs/rna_validate_bonds.py usr/lib/python3/dist-packages/mmtbx/programs/rna_validate_puckers.py usr/lib/python3/dist-packages/mmtbx/programs/rna_validate_suites.py usr/lib/python3/dist-packages/mmtbx/programs/rotalyze.py usr/lib/python3/dist-packages/mmtbx/programs/ss_idealization.py usr/lib/python3/dist-packages/mmtbx/programs/ss_validation.py usr/lib/python3/dist-packages/mmtbx/programs/suitename.py usr/lib/python3/dist-packages/mmtbx/programs/suitename_old.py usr/lib/python3/dist-packages/mmtbx/programs/taam_minus_iam.py usr/lib/python3/dist-packages/mmtbx/programs/undowser.py usr/lib/python3/dist-packages/mmtbx/programs/undowser2.py usr/lib/python3/dist-packages/mmtbx/programs/validate_ligands.py usr/lib/python3/dist-packages/mmtbx/programs/water_b_factors.py usr/lib/python3/dist-packages/mmtbx/programs/xtrapol8.py usr/lib/python3/dist-packages/mmtbx/proq2.py usr/lib/python3/dist-packages/mmtbx/real_space usr/lib/python3/dist-packages/mmtbx/real_space/__init__.py usr/lib/python3/dist-packages/mmtbx/real_space/tst.py usr/lib/python3/dist-packages/mmtbx/real_space_correlation.py usr/lib/python3/dist-packages/mmtbx/reduce usr/lib/python3/dist-packages/mmtbx/reduce/InteractionGraph.py usr/lib/python3/dist-packages/mmtbx/reduce/Movers.py usr/lib/python3/dist-packages/mmtbx/reduce/Optimizers.py usr/lib/python3/dist-packages/mmtbx/reduce/__init__.py usr/lib/python3/dist-packages/mmtbx/reduce/tst_mmtbx_reduce_ext.py usr/lib/python3/dist-packages/mmtbx/refinement usr/lib/python3/dist-packages/mmtbx/refinement/__init__.py usr/lib/python3/dist-packages/mmtbx/refinement/adp_refinement.py usr/lib/python3/dist-packages/mmtbx/refinement/anomalous_scatterer_groups.py usr/lib/python3/dist-packages/mmtbx/refinement/calculators.py usr/lib/python3/dist-packages/mmtbx/refinement/data.py usr/lib/python3/dist-packages/mmtbx/refinement/energy_monitor.py usr/lib/python3/dist-packages/mmtbx/refinement/ensemble_refinement usr/lib/python3/dist-packages/mmtbx/refinement/ensemble_refinement/__init__.py usr/lib/python3/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_probability.py usr/lib/python3/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_utils.py usr/lib/python3/dist-packages/mmtbx/refinement/flip_peptide_side_chain.py usr/lib/python3/dist-packages/mmtbx/refinement/geometry_minimization.py usr/lib/python3/dist-packages/mmtbx/refinement/group.py usr/lib/python3/dist-packages/mmtbx/refinement/inspect_tardy_trajectory.py usr/lib/python3/dist-packages/mmtbx/refinement/minimization.py usr/lib/python3/dist-packages/mmtbx/refinement/minimization_monitor.py usr/lib/python3/dist-packages/mmtbx/refinement/minimization_ncs_constraints.py usr/lib/python3/dist-packages/mmtbx/refinement/occupancies.py usr/lib/python3/dist-packages/mmtbx/refinement/orca.py usr/lib/python3/dist-packages/mmtbx/refinement/print_statistics.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space usr/lib/python3/dist-packages/mmtbx/refinement/real_space/__init__.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/adp.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/explode_and_refine.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/fit_his.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/fit_residue.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/fit_residues.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/fit_small_molecule.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/fit_water.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/individual_sites.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/occupancy.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/rigid_body.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0H.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1H.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_2.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_3.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_4.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_5.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_6.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_7.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1H.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_2.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_3.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_4.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_5.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_6.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_selection.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_fit_water.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_1.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_2.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_3.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_monitor.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_rigid_body.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/tst_weight.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/utils.py usr/lib/python3/dist-packages/mmtbx/refinement/real_space/weight.py usr/lib/python3/dist-packages/mmtbx/refinement/refinement_flags.py usr/lib/python3/dist-packages/mmtbx/refinement/restraints.py usr/lib/python3/dist-packages/mmtbx/refinement/rigid_body.py usr/lib/python3/dist-packages/mmtbx/refinement/select_best_starting_model.py usr/lib/python3/dist-packages/mmtbx/refinement/tardy.py usr/lib/python3/dist-packages/mmtbx/refinement/targets.py usr/lib/python3/dist-packages/mmtbx/refinement/tst_anomalous_scatterer_groups.py usr/lib/python3/dist-packages/mmtbx/refinement/tst_fit_rotamers.py usr/lib/python3/dist-packages/mmtbx/refinement/tst_group.py usr/lib/python3/dist-packages/mmtbx/refinement/tst_group_2.py usr/lib/python3/dist-packages/mmtbx/refinement/tst_misc.py usr/lib/python3/dist-packages/mmtbx/refinement/tst_occupancy_selections.py usr/lib/python3/dist-packages/mmtbx/refinement/tst_real_space_simple.py usr/lib/python3/dist-packages/mmtbx/refinement/tst_refinement_flags.py usr/lib/python3/dist-packages/mmtbx/refinement/tst_rigid_body.py usr/lib/python3/dist-packages/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py usr/lib/python3/dist-packages/mmtbx/refinement/tst_select_best_starting_model.py usr/lib/python3/dist-packages/mmtbx/refinement/utils.py usr/lib/python3/dist-packages/mmtbx/refinement/weights.py usr/lib/python3/dist-packages/mmtbx/refinement/weights_params.py usr/lib/python3/dist-packages/mmtbx/refinement/wrappers.py usr/lib/python3/dist-packages/mmtbx/refinement/wx_tardy_pdb.py usr/lib/python3/dist-packages/mmtbx/regression usr/lib/python3/dist-packages/mmtbx/regression/__init__.py usr/lib/python3/dist-packages/mmtbx/regression/command_line usr/lib/python3/dist-packages/mmtbx/regression/command_line/tst_find_residue_in_pdb.py usr/lib/python3/dist-packages/mmtbx/regression/discamb usr/lib/python3/dist-packages/mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_1.py usr/lib/python3/dist-packages/mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_2.py usr/lib/python3/dist-packages/mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_3.py usr/lib/python3/dist-packages/mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_4.py usr/lib/python3/dist-packages/mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_5.py usr/lib/python3/dist-packages/mmtbx/regression/discamb/tst_IAM_gradients_1.py usr/lib/python3/dist-packages/mmtbx/regression/discamb/tst_fmodel_fd_discamb.py usr/lib/python3/dist-packages/mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam.py usr/lib/python3/dist-packages/mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam_tyr.py usr/lib/python3/dist-packages/mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_1.py usr/lib/python3/dist-packages/mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_2.py usr/lib/python3/dist-packages/mmtbx/regression/fix_cablam usr/lib/python3/dist-packages/mmtbx/regression/fix_cablam/tst_basic_cl_operations.py usr/lib/python3/dist-packages/mmtbx/regression/fix_cablam/tst_insertion_codes.py usr/lib/python3/dist-packages/mmtbx/regression/fix_cablam/tst_one_resid_rotation.py usr/lib/python3/dist-packages/mmtbx/regression/fix_cablam/tst_single_outliers_surroundings.py usr/lib/python3/dist-packages/mmtbx/regression/make_fake_anomalous_data.py usr/lib/python3/dist-packages/mmtbx/regression/model usr/lib/python3/dist-packages/mmtbx/regression/model/__init__.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_2.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix_2.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_cart_ref_restraints.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_dedeuterate.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_get_vdw_radii.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_merge.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_mtrix.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_ncs.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_neutralize_scatterers.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_pairs_within.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_ramachandran.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_remove_alternative_conformations.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_symmetry.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_tors_ref_restraints.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_model_utils_merge_models.py usr/lib/python3/dist-packages/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_ext_map_01.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_ligands.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_nomap_01.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_nomap_02.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_nomap_03.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_nomap_04.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_with_mtz.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_withmap_01.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_withmap_02.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_withmap_03.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_withmap_04.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_withmap_05.py usr/lib/python3/dist-packages/mmtbx/regression/model_idealization/tst_withmap_06.py usr/lib/python3/dist-packages/mmtbx/regression/mtz usr/lib/python3/dist-packages/mmtbx/regression/mtz/tst_xtriage_fmodel.mtz usr/lib/python3/dist-packages/mmtbx/regression/ncs usr/lib/python3/dist-packages/mmtbx/regression/ncs/__init__.py usr/lib/python3/dist-packages/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py usr/lib/python3/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py usr/lib/python3/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py usr/lib/python3/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py usr/lib/python3/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py usr/lib/python3/dist-packages/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py usr/lib/python3/dist-packages/mmtbx/regression/ncs/tst_ncs_search.py usr/lib/python3/dist-packages/mmtbx/regression/ncs/tst_ncs_search_flips.py usr/lib/python3/dist-packages/mmtbx/regression/ncs/tst_ncs_utils.py usr/lib/python3/dist-packages/mmtbx/regression/ncs/tst_restraints.py usr/lib/python3/dist-packages/mmtbx/regression/pdb_interpretation usr/lib/python3/dist-packages/mmtbx/regression/pdb_interpretation/tst_custom_nb_sym_excl.py usr/lib/python3/dist-packages/mmtbx/regression/pdb_interpretation/tst_edits.py usr/lib/python3/dist-packages/mmtbx/regression/pdb_interpretation/tst_edits_actions.py usr/lib/python3/dist-packages/mmtbx/regression/pdb_interpretation/tst_tardy_geo.py usr/lib/python3/dist-packages/mmtbx/regression/pdb_interpretation/tst_using_ncs_1.py usr/lib/python3/dist-packages/mmtbx/regression/pdb_interpretation/tst_using_ncs_2.py usr/lib/python3/dist-packages/mmtbx/regression/pdbs usr/lib/python3/dist-packages/mmtbx/regression/pdbs/1ucs_cutted_xyz_rounded.pdb usr/lib/python3/dist-packages/mmtbx/regression/pdbs/1yjp_h.pdb usr/lib/python3/dist-packages/mmtbx/regression/pdbs/7n2l.pdb usr/lib/python3/dist-packages/mmtbx/regression/pdbs/AF_json_v3.cif usr/lib/python3/dist-packages/mmtbx/regression/pdbs/AF_json_v3.pdb usr/lib/python3/dist-packages/mmtbx/regression/pdbs/Fe_1brf_snip_reduced.pdb usr/lib/python3/dist-packages/mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.cif usr/lib/python3/dist-packages/mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.pdb usr/lib/python3/dist-packages/mmtbx/regression/pdbs/ligand_before_prot.pdb usr/lib/python3/dist-packages/mmtbx/regression/pdbs/one_chain_ligand_water.pdb usr/lib/python3/dist-packages/mmtbx/regression/pdbs/p9.pdb usr/lib/python3/dist-packages/mmtbx/regression/pdbs/pae.pdb usr/lib/python3/dist-packages/mmtbx/regression/pdbs/pae_model.cif usr/lib/python3/dist-packages/mmtbx/regression/pdbs/pae_model.pdb usr/lib/python3/dist-packages/mmtbx/regression/pdbs/test1.cif usr/lib/python3/dist-packages/mmtbx/regression/pdbs/two_chains.pdb usr/lib/python3/dist-packages/mmtbx/regression/pdbs/two_chains_ligand_water.pdb usr/lib/python3/dist-packages/mmtbx/regression/real_space_refine_chain usr/lib/python3/dist-packages/mmtbx/regression/real_space_refine_chain/tst_00.py usr/lib/python3/dist-packages/mmtbx/regression/real_space_refine_chain/tst_01.py usr/lib/python3/dist-packages/mmtbx/regression/tls usr/lib/python3/dist-packages/mmtbx/regression/tls/__init__.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_get_t_scheme.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_tls.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_tls_analysis.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_tls_as_xyz.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_tls_refinement_fft.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_tls_utils.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py usr/lib/python3/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py usr/lib/python3/dist-packages/mmtbx/regression/tncs usr/lib/python3/dist-packages/mmtbx/regression/tncs/tst_epsfac_and_radius.py usr/lib/python3/dist-packages/mmtbx/regression/tncs/tst_fd.py usr/lib/python3/dist-packages/mmtbx/regression/tncs/tst_moments.py usr/lib/python3/dist-packages/mmtbx/regression/tncs/tst_pair.py usr/lib/python3/dist-packages/mmtbx/regression/tst_add_arrows_on_plot.py usr/lib/python3/dist-packages/mmtbx/regression/tst_add_h_to_water.py usr/lib/python3/dist-packages/mmtbx/regression/tst_adp_restraints.py usr/lib/python3/dist-packages/mmtbx/regression/tst_alignment.py usr/lib/python3/dist-packages/mmtbx/regression/tst_altloc_chain_break.py usr/lib/python3/dist-packages/mmtbx/regression/tst_altloc_remediate.py usr/lib/python3/dist-packages/mmtbx/regression/tst_angle.py usr/lib/python3/dist-packages/mmtbx/regression/tst_anomalous_substructure.py usr/lib/python3/dist-packages/mmtbx/regression/tst_apply_cif_restraints.py usr/lib/python3/dist-packages/mmtbx/regression/tst_arginine_geometry.py usr/lib/python3/dist-packages/mmtbx/regression/tst_cc_star.py usr/lib/python3/dist-packages/mmtbx/regression/tst_chain_comparison.py usr/lib/python3/dist-packages/mmtbx/regression/tst_chain_comparison_cif.py usr/lib/python3/dist-packages/mmtbx/regression/tst_cif_as_mtz_wavelengths.py usr/lib/python3/dist-packages/mmtbx/regression/tst_cis_trans_peptide_link.py usr/lib/python3/dist-packages/mmtbx/regression/tst_clashes.py usr/lib/python3/dist-packages/mmtbx/regression/tst_command_line_input.py usr/lib/python3/dist-packages/mmtbx/regression/tst_domains_from_pae.py usr/lib/python3/dist-packages/mmtbx/regression/tst_domains_from_pae_cif.py usr/lib/python3/dist-packages/mmtbx/regression/tst_dynamics_cli.py usr/lib/python3/dist-packages/mmtbx/regression/tst_examples.py usr/lib/python3/dist-packages/mmtbx/regression/tst_find_ncs.py usr/lib/python3/dist-packages/mmtbx/regression/tst_find_ss_structure.py usr/lib/python3/dist-packages/mmtbx/regression/tst_find_ss_structure_cif.py usr/lib/python3/dist-packages/mmtbx/regression/tst_flipping_his.py usr/lib/python3/dist-packages/mmtbx/regression/tst_fmodel.py usr/lib/python3/dist-packages/mmtbx/regression/tst_fmodel_2.py usr/lib/python3/dist-packages/mmtbx/regression/tst_fmodel_and_dm.py usr/lib/python3/dist-packages/mmtbx/regression/tst_fmodel_fd.py usr/lib/python3/dist-packages/mmtbx/regression/tst_fmodel_misc.py usr/lib/python3/dist-packages/mmtbx/regression/tst_fmodel_no_cryst1.py usr/lib/python3/dist-packages/mmtbx/regression/tst_geo_min_restraints_phil.py usr/lib/python3/dist-packages/mmtbx/regression/tst_geometry_minimization.py usr/lib/python3/dist-packages/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py usr/lib/python3/dist-packages/mmtbx/regression/tst_holton_geometry_validation.py usr/lib/python3/dist-packages/mmtbx/regression/tst_isomorphous_difference_misc.py usr/lib/python3/dist-packages/mmtbx/regression/tst_ligand_ncs.py usr/lib/python3/dist-packages/mmtbx/regression/tst_loop_closure.py usr/lib/python3/dist-packages/mmtbx/regression/tst_lrv.py usr/lib/python3/dist-packages/mmtbx/regression/tst_map_model_cc.py usr/lib/python3/dist-packages/mmtbx/regression/tst_map_type_parser.py usr/lib/python3/dist-packages/mmtbx/regression/tst_maps_misc.py usr/lib/python3/dist-packages/mmtbx/regression/tst_metal_link_1.py usr/lib/python3/dist-packages/mmtbx/regression/tst_minimize_chain.py usr/lib/python3/dist-packages/mmtbx/regression/tst_ml_estimate.py usr/lib/python3/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers.py usr/lib/python3/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py usr/lib/python3/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py usr/lib/python3/dist-packages/mmtbx/regression/tst_model_map.py usr/lib/python3/dist-packages/mmtbx/regression/tst_model_vs_map.py usr/lib/python3/dist-packages/mmtbx/regression/tst_model_vs_sequence.py usr/lib/python3/dist-packages/mmtbx/regression/tst_models_to_from_chains.py usr/lib/python3/dist-packages/mmtbx/regression/tst_msa.py usr/lib/python3/dist-packages/mmtbx/regression/tst_mtz2map.py usr/lib/python3/dist-packages/mmtbx/regression/tst_multi_residue_class.py usr/lib/python3/dist-packages/mmtbx/regression/tst_origin_ids.py usr/lib/python3/dist-packages/mmtbx/regression/tst_pdbtools.py usr/lib/python3/dist-packages/mmtbx/regression/tst_polder.py usr/lib/python3/dist-packages/mmtbx/regression/tst_polder_1.py usr/lib/python3/dist-packages/mmtbx/regression/tst_polder_2.py usr/lib/python3/dist-packages/mmtbx/regression/tst_polder_3.py usr/lib/python3/dist-packages/mmtbx/regression/tst_polder_4.py usr/lib/python3/dist-packages/mmtbx/regression/tst_polder_box.py usr/lib/python3/dist-packages/mmtbx/regression/tst_polder_ccs.py usr/lib/python3/dist-packages/mmtbx/regression/tst_probe.py usr/lib/python3/dist-packages/mmtbx/regression/tst_process_predicted_model.py usr/lib/python3/dist-packages/mmtbx/regression/tst_process_predicted_model_cif.py usr/lib/python3/dist-packages/mmtbx/regression/tst_prune_model.py usr/lib/python3/dist-packages/mmtbx/regression/tst_psi_phi_extraction.py usr/lib/python3/dist-packages/mmtbx/regression/tst_rank_scale_map.py usr/lib/python3/dist-packages/mmtbx/regression/tst_rdkit_utils_fragmentation.py usr/lib/python3/dist-packages/mmtbx/regression/tst_real_space_correlation.py usr/lib/python3/dist-packages/mmtbx/regression/tst_reduce.py usr/lib/python3/dist-packages/mmtbx/regression/tst_reduce_cryoem_resolution.py usr/lib/python3/dist-packages/mmtbx/regression/tst_reduce_timeout.py usr/lib/python3/dist-packages/mmtbx/regression/tst_refine_anomalous_substructure.py usr/lib/python3/dist-packages/mmtbx/regression/tst_regularize_from_pdb.py usr/lib/python3/dist-packages/mmtbx/regression/tst_regularize_from_pdb_cif.py usr/lib/python3/dist-packages/mmtbx/regression/tst_ribbons.py usr/lib/python3/dist-packages/mmtbx/regression/tst_rigid_bond_test.py usr/lib/python3/dist-packages/mmtbx/regression/tst_ringer.py usr/lib/python3/dist-packages/mmtbx/regression/tst_sampled_model_density.py usr/lib/python3/dist-packages/mmtbx/regression/tst_scattering_table.py usr/lib/python3/dist-packages/mmtbx/regression/tst_scattering_type_registry.py usr/lib/python3/dist-packages/mmtbx/regression/tst_schrodinger_interface.py usr/lib/python3/dist-packages/mmtbx/regression/tst_sequence_validation.py usr/lib/python3/dist-packages/mmtbx/regression/tst_sort_hetatms.py usr/lib/python3/dist-packages/mmtbx/regression/tst_special_term_at_end.py usr/lib/python3/dist-packages/mmtbx/regression/tst_statistics_output.py usr/lib/python3/dist-packages/mmtbx/regression/tst_superpose.py usr/lib/python3/dist-packages/mmtbx/regression/tst_table_one.py usr/lib/python3/dist-packages/mmtbx/regression/tst_utils.py usr/lib/python3/dist-packages/mmtbx/regression/tst_validate_ligands.py usr/lib/python3/dist-packages/mmtbx/regression/tst_validate_ligands_2.py usr/lib/python3/dist-packages/mmtbx/regression/tst_validation_summary.py usr/lib/python3/dist-packages/mmtbx/resolve_resources.py usr/lib/python3/dist-packages/mmtbx/restraints.py usr/lib/python3/dist-packages/mmtbx/ringer usr/lib/python3/dist-packages/mmtbx/ringer/__init__.py usr/lib/python3/dist-packages/mmtbx/ringer/em_rolling.py usr/lib/python3/dist-packages/mmtbx/ringer/em_rscc.py usr/lib/python3/dist-packages/mmtbx/ringer/em_scoring.py usr/lib/python3/dist-packages/mmtbx/ringer/emringer.py usr/lib/python3/dist-packages/mmtbx/ringer/tst_em_rscc.py usr/lib/python3/dist-packages/mmtbx/ringer/tst_emringer.py usr/lib/python3/dist-packages/mmtbx/rotamer usr/lib/python3/dist-packages/mmtbx/rotamer/__init__.py usr/lib/python3/dist-packages/mmtbx/rotamer/graphics.py usr/lib/python3/dist-packages/mmtbx/rotamer/n_dim_table.py usr/lib/python3/dist-packages/mmtbx/rotamer/nqh.py usr/lib/python3/dist-packages/mmtbx/rotamer/ramachandran_eval.py usr/lib/python3/dist-packages/mmtbx/rotamer/ramachandran_eval_deprecated.py usr/lib/python3/dist-packages/mmtbx/rotamer/rotamer_eval.py usr/lib/python3/dist-packages/mmtbx/rotamer/sidechain_angles.py usr/lib/python3/dist-packages/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py usr/lib/python3/dist-packages/mmtbx/rotamer/tst_rotamer_eval.py usr/lib/python3/dist-packages/mmtbx/rsr usr/lib/python3/dist-packages/mmtbx/rsr/__init__.py usr/lib/python3/dist-packages/mmtbx/rsr/tst.py usr/lib/python3/dist-packages/mmtbx/run_tests.py usr/lib/python3/dist-packages/mmtbx/scaling usr/lib/python3/dist-packages/mmtbx/scaling/__init__.py usr/lib/python3/dist-packages/mmtbx/scaling/absence_likelihood.py usr/lib/python3/dist-packages/mmtbx/scaling/absences.py usr/lib/python3/dist-packages/mmtbx/scaling/absolute_scaling.py usr/lib/python3/dist-packages/mmtbx/scaling/basic_analyses.py usr/lib/python3/dist-packages/mmtbx/scaling/bayesian_estimator.py usr/lib/python3/dist-packages/mmtbx/scaling/data_statistics.py usr/lib/python3/dist-packages/mmtbx/scaling/fa_estimation.py usr/lib/python3/dist-packages/mmtbx/scaling/make_param.py usr/lib/python3/dist-packages/mmtbx/scaling/massage_twin_detwin_data.py usr/lib/python3/dist-packages/mmtbx/scaling/matthews.py usr/lib/python3/dist-packages/mmtbx/scaling/mean_f_rms_f.py usr/lib/python3/dist-packages/mmtbx/scaling/outlier_plots.py usr/lib/python3/dist-packages/mmtbx/scaling/outlier_rejection.py usr/lib/python3/dist-packages/mmtbx/scaling/pair_analyses.py 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usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/serialtbx usr/lib/python3/dist-packages/serialtbx/__init__.py usr/lib/python3/dist-packages/serialtbx/detector usr/lib/python3/dist-packages/serialtbx/detector/__init__.py usr/lib/python3/dist-packages/serialtbx/detector/cspad.py usr/lib/python3/dist-packages/serialtbx/detector/jungfrau.py usr/lib/python3/dist-packages/serialtbx/detector/legacy_metrology usr/lib/python3/dist-packages/serialtbx/detector/legacy_metrology/__init__.py usr/lib/python3/dist-packages/serialtbx/detector/legacy_metrology/cspad_detector.py usr/lib/python3/dist-packages/serialtbx/detector/legacy_metrology/generic_detector.py usr/lib/python3/dist-packages/serialtbx/detector/legacy_metrology/metrology.py usr/lib/python3/dist-packages/serialtbx/detector/rayonix.py usr/lib/python3/dist-packages/serialtbx/detector/xtc.py usr/lib/python3/dist-packages/serialtbx/mono_simulation usr/lib/python3/dist-packages/serialtbx/mono_simulation/__init__.py usr/lib/python3/dist-packages/serialtbx/mono_simulation/max_like.py usr/lib/python3/dist-packages/serialtbx/mono_simulation/util.py usr/lib/python3/dist-packages/serialtbx/util usr/lib/python3/dist-packages/serialtbx/util/__init__.py usr/lib/python3/dist-packages/serialtbx/util/construct_frame.py usr/lib/python3/dist-packages/serialtbx/util/energy_scan_notch_finder.py usr/lib/python3/dist-packages/serialtbx/util/time.py usr/lib/python3/dist-packages/simtbx usr/lib/python3/dist-packages/simtbx/__init__.py usr/lib/python3/dist-packages/simtbx/diffBragg usr/lib/python3/dist-packages/simtbx/diffBragg/__init__.py usr/lib/python3/dist-packages/simtbx/diffBragg/attr_list.py usr/lib/python3/dist-packages/simtbx/diffBragg/device.py usr/lib/python3/dist-packages/simtbx/diffBragg/ensemble_refine_launcher.py usr/lib/python3/dist-packages/simtbx/diffBragg/hopper_ensemble_utils.py usr/lib/python3/dist-packages/simtbx/diffBragg/hopper_io.py usr/lib/python3/dist-packages/simtbx/diffBragg/hopper_utils.py usr/lib/python3/dist-packages/simtbx/diffBragg/mpi_logger.py usr/lib/python3/dist-packages/simtbx/diffBragg/parameter_errors.py usr/lib/python3/dist-packages/simtbx/diffBragg/phil.py usr/lib/python3/dist-packages/simtbx/diffBragg/prep_stage2_input.py usr/lib/python3/dist-packages/simtbx/diffBragg/psf.py usr/lib/python3/dist-packages/simtbx/diffBragg/refiners usr/lib/python3/dist-packages/simtbx/diffBragg/refiners/__init__.py usr/lib/python3/dist-packages/simtbx/diffBragg/refiners/base_refiner.py usr/lib/python3/dist-packages/simtbx/diffBragg/refiners/crystal_systems usr/lib/python3/dist-packages/simtbx/diffBragg/refiners/crystal_systems/__init__.py usr/lib/python3/dist-packages/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py usr/lib/python3/dist-packages/simtbx/diffBragg/refiners/crystal_systems/manager.py usr/lib/python3/dist-packages/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py usr/lib/python3/dist-packages/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py usr/lib/python3/dist-packages/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py usr/lib/python3/dist-packages/simtbx/diffBragg/refiners/geometry.py usr/lib/python3/dist-packages/simtbx/diffBragg/refiners/parameters.py usr/lib/python3/dist-packages/simtbx/diffBragg/refiners/stage_two_refiner.py usr/lib/python3/dist-packages/simtbx/diffBragg/stage_two_utils.py usr/lib/python3/dist-packages/simtbx/diffBragg/utils.py usr/lib/python3/dist-packages/simtbx/gpu usr/lib/python3/dist-packages/simtbx/gpu/__init__.py usr/lib/python3/dist-packages/simtbx/gpu/tst_exafel_api.py usr/lib/python3/dist-packages/simtbx/gpu/tst_gpu_multisource_background.py usr/lib/python3/dist-packages/simtbx/gpu/tst_shoeboxes.py usr/lib/python3/dist-packages/simtbx/kokkos usr/lib/python3/dist-packages/simtbx/kokkos/__init__.py usr/lib/python3/dist-packages/simtbx/kokkos/tst_kokkos_lib.py usr/lib/python3/dist-packages/simtbx/modeling usr/lib/python3/dist-packages/simtbx/modeling/FormatHDF5AttributeGeometry.py usr/lib/python3/dist-packages/simtbx/modeling/__init__.py usr/lib/python3/dist-packages/simtbx/modeling/forward_models.py usr/lib/python3/dist-packages/simtbx/modeling/predictions.py usr/lib/python3/dist-packages/simtbx/nanoBragg usr/lib/python3/dist-packages/simtbx/nanoBragg/__init__.py usr/lib/python3/dist-packages/simtbx/nanoBragg/anisotropic_mosaicity.py usr/lib/python3/dist-packages/simtbx/nanoBragg/nanoBragg_beam.py usr/lib/python3/dist-packages/simtbx/nanoBragg/nanoBragg_crystal.py usr/lib/python3/dist-packages/simtbx/nanoBragg/nanoBragg_gui_dialogs.py usr/lib/python3/dist-packages/simtbx/nanoBragg/nanoBragg_gui_frames.py usr/lib/python3/dist-packages/simtbx/nanoBragg/nanoBragg_gui_init.py usr/lib/python3/dist-packages/simtbx/nanoBragg/nanoBragg_input.py usr/lib/python3/dist-packages/simtbx/nanoBragg/nanoBragg_threads.py usr/lib/python3/dist-packages/simtbx/nanoBragg/sim_data.py usr/lib/python3/dist-packages/simtbx/nanoBragg/tst_anisotropic_mosaicity.py usr/lib/python3/dist-packages/simtbx/nanoBragg/tst_gauss_argchk.py usr/lib/python3/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity.py usr/lib/python3/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity2.py usr/lib/python3/dist-packages/simtbx/nanoBragg/tst_multisource_background.py usr/lib/python3/dist-packages/simtbx/nanoBragg/tst_nanoBragg_basic.py usr/lib/python3/dist-packages/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py usr/lib/python3/dist-packages/simtbx/nanoBragg/tst_nanoBragg_minimal.py usr/lib/python3/dist-packages/simtbx/nanoBragg/tst_nanoBragg_mosaic.py usr/lib/python3/dist-packages/simtbx/nanoBragg/tst_nanoBragg_multipanel.py usr/lib/python3/dist-packages/simtbx/nanoBragg/tst_nanoBragg_pilatus.py usr/lib/python3/dist-packages/simtbx/nanoBragg/utils.py usr/lib/python3/dist-packages/simtbx/pixel usr/lib/python3/dist-packages/simtbx/pixel/__init__.py usr/lib/python3/dist-packages/simtbx/run_tests.py usr/lib/python3/dist-packages/smtbx usr/lib/python3/dist-packages/smtbx/__init__.py usr/lib/python3/dist-packages/smtbx/ab_initio usr/lib/python3/dist-packages/smtbx/ab_initio/__init__.py usr/lib/python3/dist-packages/smtbx/ab_initio/charge_flipping.py usr/lib/python3/dist-packages/smtbx/ab_initio/tests usr/lib/python3/dist-packages/smtbx/ab_initio/tests/__init__.py usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py usr/lib/python3/dist-packages/smtbx/absolute_structure usr/lib/python3/dist-packages/smtbx/absolute_structure/__init__.py usr/lib/python3/dist-packages/smtbx/absolute_structure/tests usr/lib/python3/dist-packages/smtbx/absolute_structure/tests/tst_absolute_structure.py usr/lib/python3/dist-packages/smtbx/array_family usr/lib/python3/dist-packages/smtbx/array_family/__init__.py usr/lib/python3/dist-packages/smtbx/command_line usr/lib/python3/dist-packages/smtbx/command_line/__init__.py usr/lib/python3/dist-packages/smtbx/command_line/absolute_structure.py usr/lib/python3/dist-packages/smtbx/command_line/anom_refine.py usr/lib/python3/dist-packages/smtbx/command_line/benchmark_refinement.py usr/lib/python3/dist-packages/smtbx/command_line/masks.py usr/lib/python3/dist-packages/smtbx/command_line/refine.py usr/lib/python3/dist-packages/smtbx/development.py usr/lib/python3/dist-packages/smtbx/libtbx_refresh.py usr/lib/python3/dist-packages/smtbx/masks usr/lib/python3/dist-packages/smtbx/masks/__init__.py usr/lib/python3/dist-packages/smtbx/masks/tests usr/lib/python3/dist-packages/smtbx/masks/tests/tst_masks.py usr/lib/python3/dist-packages/smtbx/refinement usr/lib/python3/dist-packages/smtbx/refinement/__init__.py usr/lib/python3/dist-packages/smtbx/refinement/constraints usr/lib/python3/dist-packages/smtbx/refinement/constraints/__init__.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/adp.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/all.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/fpfdp.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/geometrical usr/lib/python3/dist-packages/smtbx/refinement/constraints/geometrical/__init__.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/geometrical/all.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/geometrical/hydrogens.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/occupancy.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/rigid.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/site.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/__init__.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_special_position.cpp usr/lib/python3/dist-packages/smtbx/refinement/least_squares.py usr/lib/python3/dist-packages/smtbx/refinement/restraints usr/lib/python3/dist-packages/smtbx/refinement/restraints/__init__.py usr/lib/python3/dist-packages/smtbx/refinement/restraints/adp_restraints.py usr/lib/python3/dist-packages/smtbx/refinement/restraints/origin_fixing_restraints.py usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_adp_restraints.py usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_manager.py usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_restraints.py usr/lib/python3/dist-packages/smtbx/refinement/tests usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_least_squares.py usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_weighting_schemes.py usr/lib/python3/dist-packages/smtbx/refinement/weighting_schemes.py usr/lib/python3/dist-packages/smtbx/regression usr/lib/python3/dist-packages/smtbx/regression/__init__.py usr/lib/python3/dist-packages/smtbx/regression/test_data usr/lib/python3/dist-packages/smtbx/regression/test_data/__init__.py usr/lib/python3/dist-packages/smtbx/regression/test_data/sucrose_p1.res usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.cif usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.hkl usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.ins usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_refine.py usr/lib/python3/dist-packages/smtbx/run_tests.py usr/lib/python3/dist-packages/smtbx/source_generators usr/lib/python3/dist-packages/smtbx/source_generators/__init__.py usr/lib/python3/dist-packages/smtbx/source_generators/flex_fwd_h.py usr/lib/python3/dist-packages/smtbx/stl usr/lib/python3/dist-packages/smtbx/stl/__init__.py usr/lib/python3/dist-packages/smtbx/stl/map.py usr/lib/python3/dist-packages/smtbx/structure_factors usr/lib/python3/dist-packages/smtbx/structure_factors/__init__.py usr/lib/python3/dist-packages/smtbx/structure_factors/direct usr/lib/python3/dist-packages/smtbx/structure_factors/direct/__init__.py usr/lib/python3/dist-packages/smtbx/structure_factors/direct/tests usr/lib/python3/dist-packages/smtbx/structure_factors/direct/tests/tst_standard_xray.py usr/lib/python3/dist-packages/smtbx/tests usr/lib/python3/dist-packages/smtbx/tests/tst_utils.py usr/lib/python3/dist-packages/smtbx/utils.py usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/spotfinder usr/lib/python3/dist-packages/spotfinder/__init__.py usr/lib/python3/dist-packages/spotfinder/applications usr/lib/python3/dist-packages/spotfinder/applications/__init__.py usr/lib/python3/dist-packages/spotfinder/applications/heuristic_tbx usr/lib/python3/dist-packages/spotfinder/applications/heuristic_tbx/__init__.py usr/lib/python3/dist-packages/spotfinder/applications/heuristic_tbx/ice2.py usr/lib/python3/dist-packages/spotfinder/applications/heuristic_tbx/ice_nztt.py usr/lib/python3/dist-packages/spotfinder/applications/heuristic_tbx/method2_resolution.py usr/lib/python3/dist-packages/spotfinder/applications/heuristic_tbx/spotreporter.py usr/lib/python3/dist-packages/spotfinder/applications/image_viewer.py usr/lib/python3/dist-packages/spotfinder/applications/practical_heuristics.py usr/lib/python3/dist-packages/spotfinder/applications/signal_strength.py usr/lib/python3/dist-packages/spotfinder/applications/stats_distl.py usr/lib/python3/dist-packages/spotfinder/applications/wrappers.py usr/lib/python3/dist-packages/spotfinder/applications/xfel usr/lib/python3/dist-packages/spotfinder/applications/xfel/__init__.py usr/lib/python3/dist-packages/spotfinder/applications/xfel/correction_vector_plot.py usr/lib/python3/dist-packages/spotfinder/applications/xfel/cxi_phil.py usr/lib/python3/dist-packages/spotfinder/applications/xfel/cxi_run3.py usr/lib/python3/dist-packages/spotfinder/array_family usr/lib/python3/dist-packages/spotfinder/array_family/__init__.py usr/lib/python3/dist-packages/spotfinder/array_family/flex.py usr/lib/python3/dist-packages/spotfinder/command_line usr/lib/python3/dist-packages/spotfinder/command_line/__init__.py usr/lib/python3/dist-packages/spotfinder/command_line/find_active_area.py usr/lib/python3/dist-packages/spotfinder/command_line/image_viewer.py usr/lib/python3/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py usr/lib/python3/dist-packages/spotfinder/command_line/signal_strength.py usr/lib/python3/dist-packages/spotfinder/command_line/sweep_strength.py usr/lib/python3/dist-packages/spotfinder/command_line/thin_client.py usr/lib/python3/dist-packages/spotfinder/core_toolbox usr/lib/python3/dist-packages/spotfinder/core_toolbox/__init__.py usr/lib/python3/dist-packages/spotfinder/core_toolbox/boost_python usr/lib/python3/dist-packages/spotfinder/core_toolbox/boost_python/tst_small_image.py usr/lib/python3/dist-packages/spotfinder/core_toolbox/close_spots_detail.py usr/lib/python3/dist-packages/spotfinder/diffraction usr/lib/python3/dist-packages/spotfinder/diffraction/__init__.py usr/lib/python3/dist-packages/spotfinder/diffraction/geometry.py usr/lib/python3/dist-packages/spotfinder/diffraction/imagefiles.py usr/lib/python3/dist-packages/spotfinder/dxtbx_toolbox usr/lib/python3/dist-packages/spotfinder/dxtbx_toolbox/__init__.py usr/lib/python3/dist-packages/spotfinder/dxtbx_toolbox/practical_heuristics.py usr/lib/python3/dist-packages/spotfinder/exception.py usr/lib/python3/dist-packages/spotfinder/math_support usr/lib/python3/dist-packages/spotfinder/math_support/__init__.py usr/lib/python3/dist-packages/spotfinder/math_support/sphere_formulae.py usr/lib/python3/dist-packages/spotfinder/run_tests.py usr/lib/python3/dist-packages/spotfinder/servers usr/lib/python3/dist-packages/spotfinder/servers/__init__.py usr/lib/python3/dist-packages/spotfinder/servers/adsc_client.py usr/lib/python3/dist-packages/spotfinder/servers/apache.py usr/lib/python3/dist-packages/spotfinder/servers/apache_bcsb.py usr/lib/python3/dist-packages/spotfinder/servers/apache_dials.py usr/lib/python3/dist-packages/spotfinder/servers/apache_utils.py usr/lib/python3/dist-packages/spotfinder/servers/bcsb_client_example.py usr/lib/python3/dist-packages/spotfinder/servers/general_client_example.py usr/lib/python3/dist-packages/spotfinder/servers/mp_spotfinder_server_is_alive.py usr/lib/python3/dist-packages/spotfinder/servers/mp_spotfinder_server_read_file.py usr/lib/python3/dist-packages/spotfinder/servers/multipart_encoder.py usr/lib/python3/dist-packages/spotfinder/servers/pilatus_client.py usr/lib/python3/dist-packages/spotfinder/servers/specific_client_example.py usr/lib/python3/dist-packages/spotfinder/servers/spotfinder_server_client_push.py usr/lib/python3/dist-packages/spotfinder/servers/spotfinder_server_read_file.py usr/lib/python3/dist-packages/spotfinder/servers/thin_client.py usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/std_pair_ext.cpython-314-x86_64-linux-gnu.so usr/lib/python3/dist-packages/tbxx usr/lib/python3/dist-packages/tbxx/tests usr/lib/python3/dist-packages/tbxx/tests/tst_pretty_type_name.cpp usr/lib/python3/dist-packages/wxtbx usr/lib/python3/dist-packages/wxtbx/__init__.py usr/lib/python3/dist-packages/wxtbx/adp_statistics.py usr/lib/python3/dist-packages/wxtbx/anomalous_scattering.py usr/lib/python3/dist-packages/wxtbx/app.py usr/lib/python3/dist-packages/wxtbx/b_plot.py usr/lib/python3/dist-packages/wxtbx/bitmaps.py usr/lib/python3/dist-packages/wxtbx/browser.py usr/lib/python3/dist-packages/wxtbx/checklistctrl.py usr/lib/python3/dist-packages/wxtbx/command_line usr/lib/python3/dist-packages/wxtbx/command_line/__init__.py usr/lib/python3/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py usr/lib/python3/dist-packages/wxtbx/command_line/b_plot.py usr/lib/python3/dist-packages/wxtbx/command_line/inspect_r_free_flags.py usr/lib/python3/dist-packages/wxtbx/command_line/loggraph.py usr/lib/python3/dist-packages/wxtbx/command_line/pdb_editor.py usr/lib/python3/dist-packages/wxtbx/command_line/pdb_statistics.py usr/lib/python3/dist-packages/wxtbx/command_line/plan_sad_experiment.py usr/lib/python3/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py usr/lib/python3/dist-packages/wxtbx/command_line/show_file_info.py usr/lib/python3/dist-packages/wxtbx/command_line/wxpython.py usr/lib/python3/dist-packages/wxtbx/command_line/xtriage.py usr/lib/python3/dist-packages/wxtbx/custom_restraints.py usr/lib/python3/dist-packages/wxtbx/ensemble_validation.py usr/lib/python3/dist-packages/wxtbx/errors.py usr/lib/python3/dist-packages/wxtbx/heavy_atoms.py usr/lib/python3/dist-packages/wxtbx/icons.py usr/lib/python3/dist-packages/wxtbx/info_panels.py usr/lib/python3/dist-packages/wxtbx/layout.py usr/lib/python3/dist-packages/wxtbx/listeditor.py usr/lib/python3/dist-packages/wxtbx/metallicbutton.py usr/lib/python3/dist-packages/wxtbx/misc_dialogs.py usr/lib/python3/dist-packages/wxtbx/monitor.py usr/lib/python3/dist-packages/wxtbx/mtz_dump.py usr/lib/python3/dist-packages/wxtbx/path_dialogs.py usr/lib/python3/dist-packages/wxtbx/pdb_editor.py usr/lib/python3/dist-packages/wxtbx/phil_controls usr/lib/python3/dist-packages/wxtbx/phil_controls/__init__.py usr/lib/python3/dist-packages/wxtbx/phil_controls/array_label.py usr/lib/python3/dist-packages/wxtbx/phil_controls/boolctrl.py usr/lib/python3/dist-packages/wxtbx/phil_controls/choice.py usr/lib/python3/dist-packages/wxtbx/phil_controls/choice_multi.py usr/lib/python3/dist-packages/wxtbx/phil_controls/floatctrl.py usr/lib/python3/dist-packages/wxtbx/phil_controls/floats.py usr/lib/python3/dist-packages/wxtbx/phil_controls/intctrl.py usr/lib/python3/dist-packages/wxtbx/phil_controls/ints.py usr/lib/python3/dist-packages/wxtbx/phil_controls/misc_ctrls.py usr/lib/python3/dist-packages/wxtbx/phil_controls/numbers.py usr/lib/python3/dist-packages/wxtbx/phil_controls/path.py usr/lib/python3/dist-packages/wxtbx/phil_controls/simple_dialogs.py usr/lib/python3/dist-packages/wxtbx/phil_controls/space_group.py usr/lib/python3/dist-packages/wxtbx/phil_controls/strctrl.py usr/lib/python3/dist-packages/wxtbx/phil_controls/strings.py usr/lib/python3/dist-packages/wxtbx/phil_controls/symop.py usr/lib/python3/dist-packages/wxtbx/phil_controls/text_base.py usr/lib/python3/dist-packages/wxtbx/phil_controls/tree.py usr/lib/python3/dist-packages/wxtbx/phil_controls/tribool.py usr/lib/python3/dist-packages/wxtbx/phil_controls/unit_cell.py usr/lib/python3/dist-packages/wxtbx/plots usr/lib/python3/dist-packages/wxtbx/plots/__init__.py usr/lib/python3/dist-packages/wxtbx/plots/emringer.py usr/lib/python3/dist-packages/wxtbx/plots/molprobity.py usr/lib/python3/dist-packages/wxtbx/polygon.py usr/lib/python3/dist-packages/wxtbx/polygon_db_viewer.py usr/lib/python3/dist-packages/wxtbx/process_control.py usr/lib/python3/dist-packages/wxtbx/qstat_view.py usr/lib/python3/dist-packages/wxtbx/regression usr/lib/python3/dist-packages/wxtbx/regression/tst_process_control.py usr/lib/python3/dist-packages/wxtbx/reports usr/lib/python3/dist-packages/wxtbx/reports/__init__.py usr/lib/python3/dist-packages/wxtbx/reports/blast.py usr/lib/python3/dist-packages/wxtbx/reports/pdb_symmetry.py usr/lib/python3/dist-packages/wxtbx/segmentedctrl.py usr/lib/python3/dist-packages/wxtbx/sequence_view.py usr/lib/python3/dist-packages/wxtbx/symmetry_dialog.py usr/lib/python3/dist-packages/wxtbx/tables.py usr/lib/python3/dist-packages/wxtbx/utils.py usr/lib/python3/dist-packages/wxtbx/windows.py usr/lib/python3/dist-packages/wxtbx/wx4_compatibility.py usr/lib/python3/dist-packages/wxtbx/xtriage.py usr/lib/python3/dist-packages/xcif usr/lib/python3/dist-packages/xcif/__init__.py usr/lib/python3/dist-packages/xcif/benchmarks usr/lib/python3/dist-packages/xcif/benchmarks/__init__.py usr/lib/python3/dist-packages/xcif/benchmarks/run_benchmarks.py usr/lib/python3/dist-packages/xcif/regression usr/lib/python3/dist-packages/xcif/regression/__init__.py usr/lib/python3/dist-packages/xcif/regression/tst_api_compat.py usr/lib/python3/dist-packages/xcif/regression/tst_bindings.py usr/lib/python3/dist-packages/xcif/regression/tst_example_parse.py usr/lib/python3/dist-packages/xcif/regression/tst_example_tokenize.py usr/lib/python3/dist-packages/xcif/regression/tst_gil_release.py usr/lib/python3/dist-packages/xcif/regression/tst_iotbx_cif_reader_engine.py usr/lib/python3/dist-packages/xcif/regression/tst_iotbx_cif_reader_parity.py usr/lib/python3/dist-packages/xcif/regression/tst_memory.py usr/lib/python3/dist-packages/xcif/regression/tst_non_strict_mode.py usr/lib/python3/dist-packages/xcif/regression/tst_parse_verify.py usr/lib/python3/dist-packages/xcif/regression/tst_pdb_coordinates.py usr/lib/python3/dist-packages/xcif/regression/tst_pdb_sf.py usr/lib/python3/dist-packages/xcif/regression/tst_quoted_string_delimiter.py usr/lib/python3/dist-packages/xcif/regression/tst_roundtrip.py usr/lib/python3/dist-packages/xcif/regression/tst_semicolon_field_strict.py usr/lib/python3/dist-packages/xcif/regression/tst_string_interning.py usr/lib/python3/dist-packages/xcif/regression/tst_utf8.py usr/lib/python3/dist-packages/xcif/run_tests.py usr/share usr/share/doc usr/share/doc/python3-cctbx usr/share/doc/python3-cctbx/copyright usr/share/lintian usr/share/lintian/overrides usr/share/lintian/overrides/python3-cctbx usr/share/doc/python3-cctbx/changelog.Debian.gz