r-bioc-cner (1.42.0+dfsg-4)

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-stonking
Repository
https://nl.archive.ubuntu.com/ubuntu
Codename
stonking
Component
universe
Source
none
Architecture
amd64v3
Section
universe/gnu-r
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
18 kB
Size expected
9 MB
Size actual
9 MB
Size match

Dependencies

Required package dependencies

  • r-api-4.0
  • r-api-bioc-3.20
  • r-bioc-biostrings (>= 2.33.4)
  • r-bioc-pwalign
  • r-cran-dbi (>= 0.7)
  • r-cran-rsqlite (>= 0.11.4)
  • r-bioc-genomeinfodb (>= 1.1.3)
  • r-bioc-genomicranges (>= 1.23.16)
  • r-bioc-rtracklayer (>= 1.25.5)
  • r-bioc-xvector (>= 0.5.4)
  • r-bioc-genomicalignments (>= 1.1.9)
  • r-bioc-s4vectors (>= 0.13.13)
  • r-bioc-iranges (>= 2.5.27)
  • r-cran-readr (>= 0.2.2)
  • r-bioc-biocgenerics
  • r-cran-reshape2 (>= 1.4.1)
  • r-cran-ggplot2 (>= 2.1.0)
  • r-cran-powerlaw (>= 0.60.3)
  • r-bioc-annotate (>= 1.50.0)
  • r-bioc-go.db (>= 3.3.0)
  • r-cran-r.utils (>= 2.3.0)
  • r-bioc-keggrest (>= 1.14.0)
  • libc6 (>= 2.38)

Suggested packages

Recommended additional packages

  • r-bioc-gviz (>= 1.7.4)
  • r-bioc-biocstyle
  • r-cran-knitr
  • r-cran-rmarkdown
  • r-cran-testthat

Description

CNE Detection and Visualization

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD54f85d2db…d04487e6
SHA-1b83c860e…39967d3a
SHA-2568b4fd678…44c035d0
SHA-5122349a8cb…125374ac

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/CNEr
usr/lib/R/site-library/CNEr/CITATION
usr/lib/R/site-library/CNEr/DESCRIPTION
usr/lib/R/site-library/CNEr/INDEX
usr/lib/R/site-library/CNEr/Meta
usr/lib/R/site-library/CNEr/Meta/Rd.rds
usr/lib/R/site-library/CNEr/Meta/data.rds
usr/lib/R/site-library/CNEr/Meta/features.rds
usr/lib/R/site-library/CNEr/Meta/hsearch.rds
usr/lib/R/site-library/CNEr/Meta/links.rds
usr/lib/R/site-library/CNEr/Meta/nsInfo.rds
usr/lib/R/site-library/CNEr/Meta/package.rds
usr/lib/R/site-library/CNEr/Meta/vignette.rds
usr/lib/R/site-library/CNEr/NAMESPACE
usr/lib/R/site-library/CNEr/NEWS
usr/lib/R/site-library/CNEr/R
usr/lib/R/site-library/CNEr/R/CNEr
usr/lib/R/site-library/CNEr/R/CNEr.rdb
usr/lib/R/site-library/CNEr/R/CNEr.rdx
usr/lib/R/site-library/CNEr/data
usr/lib/R/site-library/CNEr/data/CNEDanRer10Hg38.rda
usr/lib/R/site-library/CNEr/data/CNEHg38DanRer10.rda
usr/lib/R/site-library/CNEr/data/axisTrack.rda
usr/lib/R/site-library/CNEr/data/cneFinalListDanRer10Hg38.rda
usr/lib/R/site-library/CNEr/data/cpgIslands.rda
usr/lib/R/site-library/CNEr/data/grangesPairsForDotplot.rda
usr/lib/R/site-library/CNEr/data/refGenes.rda
usr/lib/R/site-library/CNEr/doc
usr/lib/R/site-library/CNEr/doc/CNEr.R
usr/lib/R/site-library/CNEr/doc/CNEr.Rmd
usr/lib/R/site-library/CNEr/doc/PairwiseWholeGenomeAlignment.R
usr/lib/R/site-library/CNEr/doc/PairwiseWholeGenomeAlignment.Rmd
usr/lib/R/site-library/CNEr/doc/index.html
usr/lib/R/site-library/CNEr/extdata
usr/lib/R/site-library/CNEr/extdata/chr4.hg19.galGal3.net.axt.gz
usr/lib/R/site-library/CNEr/extdata/cne2wBf_AstMex102_danRer10_48_50
usr/lib/R/site-library/CNEr/extdata/cne2wBf_cteIde1_danRer10_100_100
usr/lib/R/site-library/CNEr/extdata/cne2wBf_cypCar1_danRer10_100_100
usr/lib/R/site-library/CNEr/extdata/cne2wBf_danRer10_hg38_45_50
usr/lib/R/site-library/CNEr/extdata/danRer10.hg38.net.axt
usr/lib/R/site-library/CNEr/extdata/danRer10CNE.sqlite
usr/lib/R/site-library/CNEr/extdata/filter_regions.danRer10.bed
usr/lib/R/site-library/CNEr/extdata/filter_regions.hg38.bed
usr/lib/R/site-library/CNEr/extdata/hg38.danRer10.net.axt
usr/lib/R/site-library/CNEr/extdata/rmsk.fa
usr/lib/R/site-library/CNEr/help
usr/lib/R/site-library/CNEr/help/AnIndex
usr/lib/R/site-library/CNEr/help/CNEr.rdb
usr/lib/R/site-library/CNEr/help/CNEr.rdx
usr/lib/R/site-library/CNEr/help/aliases.rds
usr/lib/R/site-library/CNEr/help/paths.rds
usr/lib/R/site-library/CNEr/html
usr/lib/R/site-library/CNEr/html/00Index.html
usr/lib/R/site-library/CNEr/html/R.css
usr/lib/R/site-library/CNEr/libs
usr/lib/R/site-library/CNEr/libs/CNEr.so
usr/lib/R/site-library/CNEr/obsolete
usr/lib/R/site-library/CNEr/obsolete/CNEr.Rnw
usr/lib/R/site-library/CNEr/obsolete/alignment.c
usr/lib/R/site-library/CNEr/obsolete/ceScan.r
usr/lib/R/site-library/CNEr/obsolete/ceScanR.r
usr/lib/R/site-library/CNEr/obsolete/class.r
usr/lib/R/site-library/CNEr/obsolete/src
usr/lib/R/site-library/CNEr/obsolete/src/ceScan.c
usr/lib/R/site-library/CNEr/obsolete/src/ceScanBranch1.c
usr/lib/R/site-library/CNEr/obsolete/src/ceScanBranch2.c
usr/lib/R/site-library/CNEr/obsolete/src/compile
usr/lib/R/site-library/CNEr/scripts
usr/lib/R/site-library/CNEr/scripts/danRer10Pipeline.R
usr/lib/R/site-library/CNEr/scripts/prepareData.R
usr/share
usr/share/doc
usr/share/doc/r-bioc-cner
usr/share/doc/r-bioc-cner/changelog.Debian.gz
usr/share/doc/r-bioc-cner/copyright