seqsero (1.0.1+dfsg-6build1)

Details

Core information at a glance

Distribution: ubuntu
Origin: ubuntu-stonking
Repository: https://nl.archive.ubuntu.com/ubuntu
Codename: stonking
Component: universe
Source: none
Architecture: amd64v3
Section: universe/science
Priority: optional
Maintainer: Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size: 3.5 kB
Size expected: 368.8 kB
Size actual: 368.8 kB
Size match

Dependencies

Required package dependencies

python3:any
python3-biopython
bwa
samtools
sra-toolkit

Suggested packages

Recommended additional packages

ispcr

Description

Salmonella serotyping from genome sequencing data

Homepage Download .deb

Checksums

Hash values and integrity verification status

Type	Expected	Actual
MD5	d7950538…70ea980f	d7950538…70ea980f
SHA-1	b75dada0…b88d1aba	b75dada0…b88d1aba
SHA-256	a216d928…be5bd8d2	a216d928…be5bd8d2
SHA-512	f0572fa7…978ffd9a	f0572fa7…978ffd9a

Files and directories included

.
usr
usr/bin
usr/bin/seqsero_batch_pair-end
usr/share
usr/share/doc
usr/share/doc/seqsero
usr/share/doc/seqsero/README.Debian
usr/share/doc/seqsero/README.md
usr/share/doc/seqsero/README.test
usr/share/doc/seqsero/User_manual.pdf
usr/share/doc/seqsero/changelog.Debian.gz
usr/share/doc/seqsero/copyright
usr/share/doc/seqsero/examples
usr/share/doc/seqsero/examples/single_read.fasta
usr/share/doc/seqsero/examples/sra_data.fastq
usr/share/doc/seqsero/run-unit-test
usr/share/doc-base
usr/share/doc-base/seqsero.seqsero
usr/share/man
usr/share/man/man1
usr/share/man/man1/seqsero.1.gz
usr/share/man/man1/seqsero_batch_pair-end.1.gz
usr/share/python3
usr/share/python3/runtime.d
usr/share/python3/runtime.d/seqsero.rtupdate
usr/share/seqsero
usr/share/seqsero/SeqSero.py
usr/share/seqsero/database
usr/share/seqsero/database/FliC_Family_b,d,j_special_genes.fasta
usr/share/seqsero/database/FliC_Family_fg_special.fasta
usr/share/seqsero/database/FliC_Family_g_special_genes.fasta
usr/share/seqsero/database/FliC_Family_k,z_special_genes.fasta
usr/share/seqsero/database/FliC_Family_k_z58_special_genes.fasta
usr/share/seqsero/database/FliC_Family_l,v_special_genes.fasta
usr/share/seqsero/database/FliC_Family_r,i_special_genes_short.fasta
usr/share/seqsero/database/FliC_Family_z36z38_special_genes.fasta
usr/share/seqsero/database/FliC_Family_z44_k_special_genes.fasta
usr/share/seqsero/database/FliC_Family_z4z23_special_genes.fasta
usr/share/seqsero/database/FliC_f_g_s_whole.fasta
usr/share/seqsero/database/FljB_1_2_7_whole.fasta
usr/share/seqsero/database/FljB_1_2_7_whole.fasta.amb
usr/share/seqsero/database/FljB_1_2_7_whole.fasta.ann
usr/share/seqsero/database/FljB_1_2_7_whole.fasta.bwt
usr/share/seqsero/database/FljB_1_2_7_whole.fasta.pac
usr/share/seqsero/database/FljB_1_2_7_whole.fasta.sa
usr/share/seqsero/database/FljB_Family_1_special_genes_all.fasta
usr/share/seqsero/database/FljB_Family_e_special_genes.fasta
usr/share/seqsero/database/FljB_Family_k,z_special_genes.fasta
usr/share/seqsero/database/FljB_Family_l,v_special_genes.fasta
usr/share/seqsero/database/FljB_Family_l,w_special_genes.fasta
usr/share/seqsero/database/FljB_Family_z_special_genes.fasta
usr/share/seqsero/database/FljB_l,z13,z28_whole.fasta
usr/share/seqsero/database/FljB_z6_whole.fasta
usr/share/seqsero/database/H_combine_update_9_03_2014_new.fasta
usr/share/seqsero/database/H_new_fliC_protein_database.fasta
usr/share/seqsero/database/H_new_fljB_protein_database.fasta
usr/share/seqsero/database/H_newest_database.fasta
usr/share/seqsero/database/O_3,10_and_1,3,19_spe.fasta
usr/share/seqsero/database/O_4_wzy_but_not_in_rfb.fasta
usr/share/seqsero/database/ParaA_rfb.fasta
usr/share/seqsero/database/ParaA_rfb.fasta.amb
usr/share/seqsero/database/ParaA_rfb.fasta.ann
usr/share/seqsero/database/ParaA_rfb.fasta.bwt
usr/share/seqsero/database/ParaA_rfb.fasta.pac
usr/share/seqsero/database/ParaA_rfb.fasta.sa
usr/share/seqsero/database/Typhimurium_LT2_gnd_galF.fasta
usr/share/seqsero/database/complete_oafA.fasta
usr/share/seqsero/database/fliC_b_whole.fasta
usr/share/seqsero/database/fliC_k,z_whole.fasta
usr/share/seqsero/database/fliC_l_z13_whole.fasta
usr/share/seqsero/database/fliC_r_whole.fasta
usr/share/seqsero/database/fliC_r_whole.fasta.amb
usr/share/seqsero/database/fliC_r_whole.fasta.ann
usr/share/seqsero/database/fliC_r_whole.fasta.bwt
usr/share/seqsero/database/fliC_r_whole.fasta.pac
usr/share/seqsero/database/fliC_r_whole.fasta.sa
usr/share/seqsero/database/fliC_z36,z38_whole.fasta
usr/share/seqsero/database/fliC_z4,z23_family.fasta
usr/share/seqsero/database/fliC_z4z23_whole.fasta
usr/share/seqsero/database/fliC_z58_k_special_sequences.fasta
usr/share/seqsero/database/fljB_e,n,z15_whole.fasta
usr/share/seqsero/database/new_Oserotype.fasta
usr/share/seqsero/database/oafA_of_O4_O5.fasta
usr/share/seqsero/database/special_O_genes.fasta
usr/share/seqsero/database/special_new_O_genes.fasta
usr/share/seqsero/database/specific_genes.fasta
usr/share/seqsero/database/tyr_of_O2_O9.fasta
usr/share/seqsero/libs
usr/share/seqsero/libs/BWA_analysis_H_update_new_family_dependent.py
usr/share/seqsero/libs/BWA_analysis_O_new_dependent.py
usr/share/seqsero/libs/H_combination_output_analysis.py
usr/share/seqsero/libs/Initial_Conditions.py
usr/share/seqsero/libs/Initial_functions.py
usr/share/seqsero/libs/Otype_determine_analysis.py
usr/share/seqsero/libs/compare_and_change_two_fastq_id.py
usr/share/seqsero/libs/deletion_compare.py
usr/share/seqsero/libs/run_auto_All_for_assemblies.py
usr/share/seqsero/libs/run_auto_All_for_web_multi_revise.py
usr/share/seqsero/libs/special_gene_test_assemblies.py
usr/share/seqsero/libs/splitPairedEndReads.pl
usr/share/seqsero/libs/split_interleaved_fastq.pl
usr/share/seqsero/primers
usr/share/seqsero/primers/seq_primer_fliC.txt
usr/share/seqsero/primers/seq_primer_fljB.txt
usr/bin/seqsero