spades (4.0.0+really3.15.5+dfsg-3)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-stonking
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- stonking
- Component
- universe
- Source
- none
- Architecture
- amd64v3
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 43 kB
- Size expected
- 10.1 MB
- Size actual
- 10.1 MB
- Size match
Dependencies
Required package dependencies
Suggested packages
Recommended additional packages
- None
Description
genome assembler for single-cell and isolates data sets
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | edbb7940…eeed7b6f | |
| SHA-1 | 604d0298…60f78c60 | |
| SHA-256 | df93a2c9…650ff753 | |
| SHA-512 | cba7f823…a06e8369 |
Contents
Files and directories included
. usr usr/bin usr/bin/spades usr/libexec usr/libexec/spades usr/libexec/spades/cds-mapping-stats usr/libexec/spades/cds-subgraphs usr/libexec/spades/mag-improve usr/libexec/spades/spades-convert-bin-to-fasta usr/libexec/spades/spades-core usr/libexec/spades/spades-corrector-core usr/libexec/spades/spades-gbuilder usr/libexec/spades/spades-gmapper usr/libexec/spades/spades-gsimplifier usr/libexec/spades/spades-hammer usr/libexec/spades/spades-ionhammer usr/libexec/spades/spades-kmer-estimating usr/libexec/spades/spades-kmercount usr/libexec/spades/spades-read-filter usr/libexec/spades/spades-truseq-scfcorrection usr/libexec/spades/spades.py usr/libexec/spades/spades_init.py usr/libexec/spades/spaligner usr/libexec/spades/truspades.py usr/share usr/share/doc usr/share/doc/spades usr/share/doc/spades/NEWS.Debian.gz usr/share/doc/spades/README.md.gz usr/share/doc/spades/README.test usr/share/doc/spades/changelog.Debian.gz usr/share/doc/spades/copyright usr/share/doc/spades/examples usr/share/doc/spades/examples/configs usr/share/doc/spades/examples/configs/README usr/share/doc/spades/examples/configs/careful_mda_mode.info usr/share/doc/spades/examples/configs/careful_mode.info usr/share/doc/spades/examples/configs/config.info usr/share/doc/spades/examples/configs/construction.info usr/share/doc/spades/examples/configs/detail_info_printer.info usr/share/doc/spades/examples/configs/distance_estimation.info usr/share/doc/spades/examples/configs/hmm_mode.info usr/share/doc/spades/examples/configs/isolate_mode.info usr/share/doc/spades/examples/configs/large_genome_mode.info usr/share/doc/spades/examples/configs/mda_mode.info usr/share/doc/spades/examples/configs/meta_mode.info usr/share/doc/spades/examples/configs/metaplasmid_mode.info usr/share/doc/spades/examples/configs/metaviral_mode.info usr/share/doc/spades/examples/configs/pe_params.info usr/share/doc/spades/examples/configs/plasmid_mode.info usr/share/doc/spades/examples/configs/rna_mode.info usr/share/doc/spades/examples/configs/rnaviral_mode.info usr/share/doc/spades/examples/configs/sewage_mode.info usr/share/doc/spades/examples/configs/simplification.info usr/share/doc/spades/examples/configs/toy.info usr/share/doc/spades/run-unit-test usr/share/lintian usr/share/lintian/overrides usr/share/lintian/overrides/spades usr/share/man usr/share/man/man1 usr/share/man/man1/coronaspades.1.gz usr/share/man/man1/metaspades.1.gz usr/share/man/man1/plasmidspades.1.gz usr/share/man/man1/rnaspades.1.gz usr/share/man/man1/spades.1.gz usr/share/man/man1/truspades.1.gz usr/share/python3 usr/share/python3/runtime.d usr/share/python3/runtime.d/spades.rtupdate usr/share/spades usr/share/spades/VERSION usr/share/spades/biosynthetic_spades_hmms usr/share/spades/biosynthetic_spades_hmms/AMP.hmm.gz usr/share/spades/biosynthetic_spades_hmms/AT.hmm.gz usr/share/spades/biosynthetic_spades_hmms/CStart.hmm.gz usr/share/spades/biosynthetic_spades_hmms/KR.hmm.gz usr/share/spades/biosynthetic_spades_hmms/KS.hmm.gz usr/share/spades/biosynthetic_spades_hmms/TE.hmm.gz usr/share/spades/configs usr/share/spades/configs/corrector usr/share/spades/configs/corrector/corrector.info usr/share/spades/configs/debruijn usr/share/spades/configs/debruijn/careful_mda_mode.info usr/share/spades/configs/debruijn/careful_mode.info usr/share/spades/configs/debruijn/config.info usr/share/spades/configs/debruijn/construction.info usr/share/spades/configs/debruijn/detail_info_printer.info usr/share/spades/configs/debruijn/distance_estimation.info usr/share/spades/configs/debruijn/hmm_mode.info usr/share/spades/configs/debruijn/isolate_mode.info usr/share/spades/configs/debruijn/large_genome_mode.info usr/share/spades/configs/debruijn/mda_mode.info usr/share/spades/configs/debruijn/meta_mode.info usr/share/spades/configs/debruijn/metaplasmid_mode.info usr/share/spades/configs/debruijn/metaviral_mode.info usr/share/spades/configs/debruijn/moleculo_mode.info usr/share/spades/configs/debruijn/pe_params.info usr/share/spades/configs/debruijn/plasmid_mode.info usr/share/spades/configs/debruijn/rna_mode.info usr/share/spades/configs/debruijn/rnaviral_mode.info usr/share/spades/configs/debruijn/simplification.info usr/share/spades/configs/debruijn/toy.info usr/share/spades/configs/debruijn/tsa.info usr/share/spades/configs/hammer usr/share/spades/configs/hammer/config.info usr/share/spades/configs/ionhammer usr/share/spades/configs/ionhammer/ionhammer.cfg usr/share/spades/coronaspades_hmms usr/share/spades/coronaspades_hmms/Pfam-A.SARS-CoV-2.hmm.gz usr/share/spades/coronaspades_hmms/Phan-CoV.hmm.gz usr/share/spades/spades_pipeline usr/share/spades/spades_pipeline/commands_parser.py usr/share/spades/spades_pipeline/common usr/share/spades/spades_pipeline/common/SeqIO.py usr/share/spades/spades_pipeline/common/__init__.py usr/share/spades/spades_pipeline/common/alignment.py usr/share/spades/spades_pipeline/common/parallel_launcher.py usr/share/spades/spades_pipeline/common/sam_parser.py usr/share/spades/spades_pipeline/executors usr/share/spades/spades_pipeline/executors/executor_local.py usr/share/spades/spades_pipeline/executors/executor_save_yaml.py usr/share/spades/spades_pipeline/executors/executors.py usr/share/spades/spades_pipeline/options_parser.py usr/share/spades/spades_pipeline/options_storage.py usr/share/spades/spades_pipeline/process_cfg.py usr/share/spades/spades_pipeline/run_contig_breaker.py usr/share/spades/spades_pipeline/scripts usr/share/spades/spades_pipeline/scripts/breaking_scaffolds_script.py usr/share/spades/spades_pipeline/scripts/check_test_script.py usr/share/spades/spades_pipeline/scripts/compress_all.py usr/share/spades/spades_pipeline/scripts/copy_files.py usr/share/spades/spades_pipeline/scripts/correction_iteration_script.py usr/share/spades/spades_pipeline/scripts/plasmid_glue.py usr/share/spades/spades_pipeline/scripts/postprocessing_script.py usr/share/spades/spades_pipeline/scripts/preprocess_contigs.py usr/share/spades/spades_pipeline/scripts/preprocess_interlaced_reads.py usr/share/spades/spades_pipeline/stages usr/share/spades/spades_pipeline/stages/__init__.py usr/share/spades/spades_pipeline/stages/before_start_stage.py usr/share/spades/spades_pipeline/stages/breaking_scaffolds_stage.py usr/share/spades/spades_pipeline/stages/check_test_stage.py usr/share/spades/spades_pipeline/stages/correction_stage.py usr/share/spades/spades_pipeline/stages/error_correction_stage.py usr/share/spades/spades_pipeline/stages/pipeline.py usr/share/spades/spades_pipeline/stages/postprocessing_stage.py usr/share/spades/spades_pipeline/stages/preprocess_reads_stage.py usr/share/spades/spades_pipeline/stages/spades_iteration_stage.py usr/share/spades/spades_pipeline/stages/spades_stage.py usr/share/spades/spades_pipeline/stages/stage.py usr/share/spades/spades_pipeline/stages/terminating_stage.py usr/share/spades/spades_pipeline/support.py usr/share/spades/spades_pipeline/truspades usr/share/spades/spades_pipeline/truspades/__init__.py usr/share/spades/spades_pipeline/truspades/barcode_extraction.py usr/share/spades/spades_pipeline/truspades/break_by_coverage.py usr/share/spades/spades_pipeline/truspades/generate_quality.py usr/share/spades/spades_pipeline/truspades/id_generation.py usr/share/spades/spades_pipeline/truspades/launch_options.py usr/share/spades/spades_pipeline/truspades/moleculo_filter_contigs.py usr/share/spades/spades_pipeline/truspades/moleculo_postprocessing.py usr/share/spades/spades_pipeline/truspades/reference_construction.py usr/share/spades/spades_pipeline/truspades/string_dist_utils.py usr/share/spades/test_dataset usr/share/spades/test_dataset/ecoli_1K_1.fq.gz usr/share/spades/test_dataset/ecoli_1K_2.fq.gz usr/share/spades/test_dataset/genes_1K.gff usr/share/spades/test_dataset/genes_1K.txt usr/share/spades/test_dataset/operons_1K.gff usr/share/spades/test_dataset/operons_1K.txt usr/share/spades/test_dataset/reference_1K.fa.gz usr/share/spades/test_dataset_plasmid usr/share/spades/test_dataset_plasmid/pl1.fq.gz usr/share/spades/test_dataset_plasmid/pl2.fq.gz usr/share/spades/test_dataset_truspades usr/share/spades/test_dataset_truspades/A_R1.fastq.gz usr/share/spades/test_dataset_truspades/A_R2.fastq.gz usr/share/spades/test_dataset_truspades/B_R1.fastq.gz usr/share/spades/test_dataset_truspades/B_R2.fastq.gz usr/share/spaligner usr/share/spaligner/spaligner_config.yaml usr/bin/coronaspades usr/bin/coronaspades.py usr/bin/metaspades usr/bin/metaspades.py usr/bin/plasmidspades usr/bin/plasmidspades.py usr/bin/rnaspades usr/bin/rnaspades.py usr/bin/spades.py usr/bin/truspades usr/bin/truspades.py usr/libexec/spades/VERSION usr/libexec/spades/coronaspades.py usr/libexec/spades/metaplasmidspades.py usr/libexec/spades/metaspades.py usr/libexec/spades/metaviralspades.py usr/libexec/spades/plasmidspades.py usr/libexec/spades/rnaspades.py usr/libexec/spades/rnaviralspades.py usr/libexec/spades/spades-bwa usr/share/man/man1/coronaspades.py.1.gz usr/share/man/man1/metaspades.py.1.gz usr/share/man/man1/plasmidspades.py.1.gz usr/share/man/man1/rnaspades.py.1.gz usr/share/man/man1/spades.py.1.gz usr/share/man/man1/truspades.py.1.gz