srst2 (0.2.0-14)

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-stonking
Repository
https://nl.archive.ubuntu.com/ubuntu
Codename
stonking
Component
universe
Source
none
Architecture
amd64v3
Section
universe/science
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
264 B
Size expected
62.1 kB
Size actual
62.1 kB
Size match

Dependencies

Required package dependencies

  • python3:any
  • bowtie2
  • cd-hit
  • samtools
  • python3-scipy
  • python3-biopython

Suggested packages

Recommended additional packages

  • None

Description

Short Read Sequence Typing for Bacterial Pathogens

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD508168644…476313dc
SHA-1abdb47b5…67a5aad3
SHA-25676a7602c…ef8235d9
SHA-512c86e45ef…c712db71

Contents

Files and directories included

.
usr
usr/bin
usr/share
usr/share/doc
usr/share/doc/srst2
usr/share/doc/srst2/README.html
usr/share/doc/srst2/changelog.Debian.gz
usr/share/doc/srst2/copyright
usr/share/doc/srst2/example.txt.gz
usr/share/doc/srst2/tests
usr/share/doc/srst2/tests/test_slurm_srst2.py.gz
usr/share/doc/srst2/tests/test_srst2.py.gz
usr/share/doc-base
usr/share/doc-base/srst2.srst2
usr/share/man
usr/share/man/man1
usr/share/man/man1/VFDB_cdhit_to_csv.1.gz
usr/share/man/man1/VFDBgenus.1.gz
usr/share/man/man1/csv_to_gene_db.1.gz
usr/share/man/man1/get_all_vfdb.1.gz
usr/share/man/man1/get_genus_vfdb.1.gz
usr/share/man/man1/getmlst.1.gz
usr/share/man/man1/slurm_srst2.1.gz
usr/share/man/man1/srst2.1.gz
usr/share/python3
usr/share/python3/runtime.d
usr/share/python3/runtime.d/srst2.rtupdate
usr/share/srst2
usr/share/srst2/__init__.py
usr/share/srst2/analyseSRST2.py
usr/share/srst2/consensus_alignment.py
usr/share/srst2/database_clustering
usr/share/srst2/database_clustering/VFDB_cdhit_to_csv.py
usr/share/srst2/database_clustering/VFDBgenus.py
usr/share/srst2/database_clustering/align_plot_tree_min3.py
usr/share/srst2/database_clustering/cdhit_to_csv.py
usr/share/srst2/database_clustering/csv_to_gene_db.py
usr/share/srst2/database_clustering/get_all_vfdb.sh
usr/share/srst2/database_clustering/get_genus_vfdb.sh
usr/share/srst2/getmlst.py
usr/share/srst2/qsub_srst2.py
usr/share/srst2/slurm_srst2.py
usr/share/srst2/srst2.py
usr/share/srst2/version.py
usr/bin/VFDB_cdhit_to_csv
usr/bin/VFDBgenus
usr/bin/csv_to_gene_db
usr/bin/get_all_vfdb
usr/bin/get_genus_vfdb
usr/bin/getmlst
usr/bin/slurm_srst2
usr/bin/srst2