pbhoney (15.8.24+dfsg-8build1)

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-stonking
Repository
https://nl.archive.ubuntu.com/ubuntu
Codename
stonking
Component
universe
Source
pbsuite
Architecture
i386
Section
universe/science
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
3.8 kB
Size expected
1.1 MB
Size actual
1.1 MB
Size match

Dependencies

Required package dependencies

  • python3:any
  • python3-pbsuite-utils (= 15.8.24+dfsg-8build1)
  • python3-pbbanana (= 15.8.24+dfsg-8build1)
  • python3-pysam
  • python3-networkx
  • python3-h5py
  • python3-numpy
  • python3-intervaltree-bio
  • blasr
  • samtools

Suggested packages

Recommended additional packages

  • None

Description

genomic structural variation discovery

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD52b79b683…755723c0
SHA-19179b0a0…5c1b121f
SHA-25697c445ba…87c0a498
SHA-5122f66a62d…a94011e5

Contents

Files and directories included

.
usr
usr/bin
usr/lib
usr/lib/python3
usr/lib/python3/dist-packages
usr/lib/python3/dist-packages/pbsuite
usr/lib/python3/dist-packages/pbsuite/honey
usr/lib/python3/dist-packages/pbsuite/honey/ComplexResolver.py
usr/lib/python3/dist-packages/pbsuite/honey/Force.py
usr/lib/python3/dist-packages/pbsuite/honey/HSpots.py
usr/lib/python3/dist-packages/pbsuite/honey/HSpots.pyx
usr/lib/python3/dist-packages/pbsuite/honey/Honey.py
usr/lib/python3/dist-packages/pbsuite/honey/SVMachines.py
usr/lib/python3/dist-packages/pbsuite/honey/TGraf.py
usr/lib/python3/dist-packages/pbsuite/honey/Valid.py
usr/lib/python3/dist-packages/pbsuite/honey/__init__.py
usr/lib/python3/dist-packages/pbsuite/honey/bakH.py
usr/lib/python3/dist-packages/pbsuite/honey/bampie.py
usr/lib/python3/dist-packages/pbsuite/honey/massivePhrap.py
usr/lib/python3/dist-packages/pbsuite/honey/realign.py
usr/lib/python3/dist-packages/pbsuite/honey/recallSpots.py
usr/lib/python3/dist-packages/pbsuite/honey/spotH5Merge.py
usr/lib/python3/dist-packages/pbsuite/honey/spotH5dump.py
usr/lib/python3/dist-packages/pbsuite/honey/spotToBed.py
usr/lib/python3/dist-packages/pbsuite/honey/spotToVCF.py
usr/lib/python3/dist-packages/pbsuite/honey/svm
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul1.svm
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul1.svm/model
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul1.svm/notes
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul1.svm/range
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul1.svm/scale
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul1.svm/scale.out
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul1.svm/scale.png
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul1.svm/train
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul12.svm
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul12.svm/metrics
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul12.svm/model
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul12.svm/notes
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul12.svm/range
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul12.svm/scale
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul12.svm/scale.out
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul12.svm/scale.png
usr/lib/python3/dist-packages/pbsuite/honey/svm/ecoli_jul12.svm/train
usr/share
usr/share/doc
usr/share/doc/pbhoney
usr/share/doc/pbhoney/HoneyReadme.txt.gz
usr/share/doc/pbhoney/README.Debian
usr/share/doc/pbhoney/README.test
usr/share/doc/pbhoney/copyright
usr/share/doc/pbhoney/examples
usr/share/doc/pbhoney/examples/filtered_subreads.fastq
usr/share/doc/pbhoney/examples/lambda_modified.fasta
usr/share/doc/pbhoney/examples/lambda_reference.fasta
usr/share/doc/pbhoney/examples/modify.py
usr/share/doc/pbhoney/examples/workflow.sh
usr/share/doc/pbhoney/run-unit-test
usr/share/man
usr/share/man/man1
usr/share/man/man1/Honey.1.gz
usr/bin/Honey
usr/bin/Honey.py
usr/share/doc/pbhoney/changelog.Debian.gz
usr/share/man/man1/Honey.py.1.gz