lumpy-sv (0.3.1+dfsg-8.1)

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-stonking
Repository
https://ports.ubuntu.com
Codename
stonking
Component
universe
Source
none
Architecture
riscv64
Section
universe/science
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
552 B
Size expected
218.1 kB
Size actual
218.1 kB
Size match

Dependencies

Required package dependencies

  • libbamtools2.5.3 (>= 2.5.3+dfsg)
  • libc6 (>= 2.38)
  • libgcc-s1 (>= 3.0)
  • libgzstream0 (>= 1.5+git20171107.9a20658)
  • libhts3t64 (>= 1.17)
  • libstdc++6 (>= 13.1)
  • samblaster
  • samtools
  • python3
  • python3-pysam
  • python3-numpy
  • bamkit

Suggested packages

Recommended additional packages

  • None

Description

general probabilistic framework for structural variant discovery

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD5b6b8deed…8a9c3830
SHA-1244d354a…60e5ddb4
SHA-2566ea04647…deffe8a5
SHA-51264673d7c…953fb65e

Contents

Files and directories included

.
etc
etc/lumpy-sv
etc/lumpy-sv/lumpyexpress.config
usr
usr/bin
usr/bin/lumpy
usr/bin/lumpy_filter
usr/bin/lumpyexpress
usr/share
usr/share/doc
usr/share/doc/lumpy-sv
usr/share/doc/lumpy-sv/README.md.gz
usr/share/doc/lumpy-sv/changelog.Debian.gz
usr/share/doc/lumpy-sv/copyright
usr/share/lumpy-sv
usr/share/lumpy-sv/scripts
usr/share/lumpy-sv/scripts/bamkit
usr/share/lumpy-sv/scripts/bedpe_sort.py
usr/share/lumpy-sv/scripts/check_sorting.py
usr/share/lumpy-sv/scripts/cnvanator_to_bedpes.py
usr/share/lumpy-sv/scripts/extract-sites.py
usr/share/lumpy-sv/scripts/extractSplitReads_BwaMem
usr/share/lumpy-sv/scripts/get_coverages.py
usr/share/lumpy-sv/scripts/get_exclude_regions.py
usr/share/lumpy-sv/scripts/l_bp.py
usr/share/lumpy-sv/scripts/l_merge.py
usr/share/lumpy-sv/scripts/l_sort.py
usr/share/lumpy-sv/scripts/lumpy_smooth
usr/share/lumpy-sv/scripts/lumpyexpress
usr/share/lumpy-sv/scripts/pairend_distro.py
usr/share/lumpy-sv/scripts/par-svtyper.sh
usr/share/lumpy-sv/scripts/prob_bedpe_to_bedgraph.py
usr/share/lumpy-sv/scripts/run_histo.sh
usr/share/lumpy-sv/scripts/split_unmapped_to_fasta.pl
usr/share/lumpy-sv/scripts/vcfToBedpe
usr/share/man
usr/share/man/man1
usr/share/man/man1/lumpy.1.gz
usr/share/man/man1/lumpy_filter.1.gz
usr/share/man/man1/lumpyexpress.1.gz
usr/share/lumpy-sv/scripts/lumpyexpress.config