python3-seqcluster (1.2.9+ds-7)
2 versions available in ubuntu/resolute/multiverse/armhf
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute-ports
- Repository
- https://ports.ubuntu.com
- Codename
- resolute
- Component
- multiverse
- Source
- python-seqcluster
- Architecture
- armhf
- Section
- multiverse/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 110.6 MB
- Size expected
- 1.7 MB
- Size actual
- 1.7 MB
- Size match
- match
Dependencies
Required package dependencies
Recommends
Recommended package dependencies
- bedtools
- bowtie2|bowtie
- fastqc
- libjs-bootstrap
- libjs-jquery
- libjs-jquery-datatables
- libjs-jquery-tablesorter
- libjs-jquery-ui
- mirtop
- python3-cutadapt
- r-bioc-degreport
- r-bioc-deseq2
- r-bioc-edger
- r-bioc-htsfilter
- r-cran-devtools
- r-cran-dplyr
- r-cran-ggplot2
- r-cran-gplots
- r-cran-gridextra
- r-cran-gtools
- r-cran-knitr
- r-cran-pheatmap
- r-cran-reshape
- rna-star
- samtools
- vienna-rna
Suggested packages
Recommended additional packages
Provides
Virtual packages provided
- None
Description
analysis of small RNA in NGS data
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 2eb03a56…f0af2a11 | not available |
| SHA-1 | 6b6e83ab…b0bbbef4 | not available |
| SHA-256 | 74057859…f9bfb769 | not available |
| SHA-512 | 8a21366d…df906f8e | match |
Contents
Files and directories included
. usr usr/lib usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/data usr/lib/python3/dist-packages/data/bwt usr/lib/python3/dist-packages/data/bwt/ref.1.bt2 usr/lib/python3/dist-packages/data/bwt/ref.2.bt2 usr/lib/python3/dist-packages/data/bwt/ref.3.bt2 usr/lib/python3/dist-packages/data/bwt/ref.4.bt2 usr/lib/python3/dist-packages/data/bwt/ref.fa usr/lib/python3/dist-packages/data/bwt/ref.fa.fai usr/lib/python3/dist-packages/data/bwt/ref.rev.1.bt2 usr/lib/python3/dist-packages/data/bwt/ref.rev.2.bt2 usr/lib/python3/dist-packages/data/examples usr/lib/python3/dist-packages/data/examples/2_clusters_2_seqs_shared usr/lib/python3/dist-packages/data/examples/2_clusters_differents usr/lib/python3/dist-packages/data/examples/5_clusters_1_sequences usr/lib/python3/dist-packages/data/examples/cluster usr/lib/python3/dist-packages/data/examples/cluster/ann_reduced.gtf usr/lib/python3/dist-packages/data/examples/cluster/run.sh usr/lib/python3/dist-packages/data/examples/cluster/seqs_map.bam usr/lib/python3/dist-packages/data/examples/cluster/seqs_map.bam.bai usr/lib/python3/dist-packages/data/examples/cluster/seqs_map_rmlw.bam usr/lib/python3/dist-packages/data/examples/cluster/seqs_set.fa usr/lib/python3/dist-packages/data/examples/cluster/seqs_set.ma usr/lib/python3/dist-packages/data/examples/collapse usr/lib/python3/dist-packages/data/examples/collapse/collapse usr/lib/python3/dist-packages/data/examples/collapse/collapse/Cell_S2_trimmed.fastq usr/lib/python3/dist-packages/data/examples/collapse/collapse/Cell_S3_trimmed.fastq usr/lib/python3/dist-packages/data/examples/collapse/collapse/Cell_S4_trimmed.fa usr/lib/python3/dist-packages/data/examples/collapse/config usr/lib/python3/dist-packages/data/examples/function usr/lib/python3/dist-packages/data/examples/function/run.sh usr/lib/python3/dist-packages/data/examples/function/test_input.txt usr/lib/python3/dist-packages/data/examples/map_snp usr/lib/python3/dist-packages/data/examples/map_snp/dbsnp_toy.vcf usr/lib/python3/dist-packages/data/examples/map_snp/hsa_toy.gff3 usr/lib/python3/dist-packages/data/examples/miraligner usr/lib/python3/dist-packages/data/examples/miraligner/hairpin.fa usr/lib/python3/dist-packages/data/examples/miraligner/hsa.gff3 usr/lib/python3/dist-packages/data/examples/miraligner/miRNA.str usr/lib/python3/dist-packages/data/examples/miraligner/run.sh usr/lib/python3/dist-packages/data/examples/miraligner/sim_isomir.fa usr/lib/python3/dist-packages/data/examples/miraligner/sim_isomir.fastq usr/lib/python3/dist-packages/data/examples/miraligner/sim_isomir.sam usr/lib/python3/dist-packages/data/examples/miraligner/sim_mut.fa usr/lib/python3/dist-packages/data/examples/seqcluster.json usr/lib/python3/dist-packages/data/examples/seqs_set.ma usr/lib/python3/dist-packages/data/examples/simulated usr/lib/python3/dist-packages/data/examples/simulated/origin.fa usr/lib/python3/dist-packages/data/examples/simulated/run.sh usr/lib/python3/dist-packages/data/examples/umis usr/lib/python3/dist-packages/data/examples/umis/sample.fastq usr/lib/python3/dist-packages/data/genomes usr/lib/python3/dist-packages/data/genomes/Log.out usr/lib/python3/dist-packages/data/genomes/genome.fa usr/lib/python3/dist-packages/data/genomes/genome.fa.fai usr/lib/python3/dist-packages/data/genomes/regions.bed usr/lib/python3/dist-packages/data/genomes/star usr/lib/python3/dist-packages/data/genomes/star/Genome usr/lib/python3/dist-packages/data/genomes/star/SA usr/lib/python3/dist-packages/data/genomes/star/SAindex usr/lib/python3/dist-packages/data/genomes/star/chrLength.txt usr/lib/python3/dist-packages/data/genomes/star/chrName.txt usr/lib/python3/dist-packages/data/genomes/star/chrNameLength.txt usr/lib/python3/dist-packages/data/genomes/star/chrStart.txt usr/lib/python3/dist-packages/data/genomes/star/genomeParameters.txt usr/lib/python3/dist-packages/data/pipeline_example usr/lib/python3/dist-packages/data/pipeline_example/mirqc usr/lib/python3/dist-packages/data/pipeline_example/mirqc/download.sh usr/lib/python3/dist-packages/data/pipeline_example/mirqc/mirqc_bcbio.csv usr/lib/python3/dist-packages/data/pipeline_example/mirqc/non_mirqc_bcbio.csv usr/lib/python3/dist-packages/data/pipeline_example/mirqc/run.sh usr/lib/python3/dist-packages/data/pipeline_example/mirqc/template.yaml usr/lib/python3/dist-packages/data/primary_tss usr/lib/python3/dist-packages/data/primary_tss/chien_hg19.txt.csv usr/lib/python3/dist-packages/data/primary_tss/corcoran_hg18.txt.csv usr/lib/python3/dist-packages/data/primary_tss/fujita_hg17.txt.csv usr/lib/python3/dist-packages/data/primary_tss/hua_hg19-SP5-global_mir_promoter.bed usr/lib/python3/dist-packages/data/primary_tss/landgraf_hg17.txt.csv usr/lib/python3/dist-packages/data/primary_tss/marson_hg17.txt.csv usr/lib/python3/dist-packages/data/primary_tss/mirstart_2010_prediction.txt.csv usr/lib/python3/dist-packages/data/primary_tss/ozsolak_hg18.txt.csv usr/lib/python3/dist-packages/data/primary_tss/saini_hg17.txt.csv usr/lib/python3/dist-packages/data/s1.fasta usr/lib/python3/dist-packages/data/s2.fasta usr/lib/python3/dist-packages/seqcluster usr/lib/python3/dist-packages/seqcluster/__init__.py usr/lib/python3/dist-packages/seqcluster/annotate usr/lib/python3/dist-packages/seqcluster/annotate/__init__.py usr/lib/python3/dist-packages/seqcluster/annotate/coral.py usr/lib/python3/dist-packages/seqcluster/collapse.py usr/lib/python3/dist-packages/seqcluster/command_line.py usr/lib/python3/dist-packages/seqcluster/create_cluster_info.py usr/lib/python3/dist-packages/seqcluster/create_report.py usr/lib/python3/dist-packages/seqcluster/db usr/lib/python3/dist-packages/seqcluster/db/__init__.py usr/lib/python3/dist-packages/seqcluster/detect usr/lib/python3/dist-packages/seqcluster/detect/__init__.py usr/lib/python3/dist-packages/seqcluster/detect/cluster.py usr/lib/python3/dist-packages/seqcluster/detect/description.py usr/lib/python3/dist-packages/seqcluster/detect/metacluster.py usr/lib/python3/dist-packages/seqcluster/explore_cluster.py usr/lib/python3/dist-packages/seqcluster/function usr/lib/python3/dist-packages/seqcluster/function/__init__.py usr/lib/python3/dist-packages/seqcluster/function/coral.py usr/lib/python3/dist-packages/seqcluster/function/peakdetect.py usr/lib/python3/dist-packages/seqcluster/function/predictions.py usr/lib/python3/dist-packages/seqcluster/function/rnafold.py usr/lib/python3/dist-packages/seqcluster/function/target.py usr/lib/python3/dist-packages/seqcluster/html usr/lib/python3/dist-packages/seqcluster/html/HTML.py usr/lib/python3/dist-packages/seqcluster/html/__init__.py usr/lib/python3/dist-packages/seqcluster/install.py usr/lib/python3/dist-packages/seqcluster/libs usr/lib/python3/dist-packages/seqcluster/libs/__init__.py usr/lib/python3/dist-packages/seqcluster/libs/annotation.py usr/lib/python3/dist-packages/seqcluster/libs/barchart.py usr/lib/python3/dist-packages/seqcluster/libs/bayes.py usr/lib/python3/dist-packages/seqcluster/libs/classes.py usr/lib/python3/dist-packages/seqcluster/libs/config.py usr/lib/python3/dist-packages/seqcluster/libs/do.py usr/lib/python3/dist-packages/seqcluster/libs/expchart.py usr/lib/python3/dist-packages/seqcluster/libs/fastq.py usr/lib/python3/dist-packages/seqcluster/libs/inputs.py usr/lib/python3/dist-packages/seqcluster/libs/logger.py usr/lib/python3/dist-packages/seqcluster/libs/multimap.py usr/lib/python3/dist-packages/seqcluster/libs/mystats.py usr/lib/python3/dist-packages/seqcluster/libs/parameters.py usr/lib/python3/dist-packages/seqcluster/libs/parse.py usr/lib/python3/dist-packages/seqcluster/libs/peaks.py usr/lib/python3/dist-packages/seqcluster/libs/pysen.py usr/lib/python3/dist-packages/seqcluster/libs/read.py usr/lib/python3/dist-packages/seqcluster/libs/report.py usr/lib/python3/dist-packages/seqcluster/libs/sam2bed.py usr/lib/python3/dist-packages/seqcluster/libs/seqviz.py usr/lib/python3/dist-packages/seqcluster/libs/simulator.py usr/lib/python3/dist-packages/seqcluster/libs/stats.py usr/lib/python3/dist-packages/seqcluster/libs/table.py usr/lib/python3/dist-packages/seqcluster/libs/thinkbayes.py usr/lib/python3/dist-packages/seqcluster/libs/tool.py usr/lib/python3/dist-packages/seqcluster/libs/utils.py usr/lib/python3/dist-packages/seqcluster/make_clusters.py usr/lib/python3/dist-packages/seqcluster/make_predictions.py usr/lib/python3/dist-packages/seqcluster/methods usr/lib/python3/dist-packages/seqcluster/methods/__init__.py usr/lib/python3/dist-packages/seqcluster/prepare_data.py usr/lib/python3/dist-packages/seqcluster/seqbuster usr/lib/python3/dist-packages/seqcluster/seqbuster/__init__.py usr/lib/python3/dist-packages/seqcluster/seqbuster/realign.py usr/lib/python3/dist-packages/seqcluster/seqbuster/snps.py usr/lib/python3/dist-packages/seqcluster/stats.py usr/lib/python3/dist-packages/seqcluster/templates usr/lib/python3/dist-packages/seqcluster/templates/__init__.py usr/lib/python3/dist-packages/seqcluster/templates/cluster usr/lib/python3/dist-packages/seqcluster/templates/info.css usr/lib/python3/dist-packages/seqcluster/templates/main usr/lib/python3/dist-packages/seqcluster/templates/report.rmd usr/lib/python3/dist-packages/seqcluster/templates/style.css usr/lib/python3/dist-packages/seqcluster-1.2.9.egg-info usr/lib/python3/dist-packages/seqcluster-1.2.9.egg-info/PKG-INFO usr/lib/python3/dist-packages/seqcluster-1.2.9.egg-info/dependency_links.txt usr/lib/python3/dist-packages/seqcluster-1.2.9.egg-info/entry_points.txt usr/lib/python3/dist-packages/seqcluster-1.2.9.egg-info/not-zip-safe usr/lib/python3/dist-packages/seqcluster-1.2.9.egg-info/top_level.txt usr/share usr/share/doc usr/share/doc/python3-seqcluster usr/share/doc/python3-seqcluster/TODO.Debian usr/share/doc/python3-seqcluster/changelog.Debian.gz usr/share/doc/python3-seqcluster/copyright
Versions
2 versions in this repository slot, newest first