r-bioc-isoformswitchanalyzer (2.6.0+ds-3)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- resolute
- Component
- universe
- Source
- r-bioc-isoformswitchanalyzer
- Architecture
- amd64v3
- Section
- universe/gnu-r
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 4.8 MB
- Size expected
- 4.1 MB
- Size actual
- 4.1 MB
- Size match
- match
Dependencies
Required package dependencies
- r-api-4.0
- r-api-bioc-3.20
- r-bioc-limma
- r-bioc-dexseq
- r-bioc-saturn (>= 1.7.0)
- r-bioc-sva
- r-cran-ggplot2 (>= 3.3.5)
- r-bioc-pfamanalyzer
- r-bioc-bsgenome
- r-cran-plyr
- r-cran-reshape2
- r-cran-gridextra
- r-bioc-biostrings (>= 2.50.0)
- r-bioc-iranges
- r-bioc-genomicranges
- r-cran-rcolorbrewer
- r-bioc-rtracklayer
- r-cran-venndiagram
- r-cran-dbi
- r-bioc-genomeinfodb
- r-bioc-tximport (>= 1.7.1)
- r-bioc-tximeta (>= 1.7.12)
- r-bioc-edger
- r-cran-futile.logger
- r-cran-stringr
- r-cran-dplyr
- r-cran-magrittr
- r-cran-readr
- r-cran-tibble
- r-bioc-xvector
- r-bioc-biocgenerics
- r-cran-rcurl
- r-bioc-biobase
- r-bioc-summarizedexperiment
- r-cran-tidyr
- r-bioc-s4vectors
- r-bioc-biocparallel
- r-bioc-pwalign
Recommends
Recommended package dependencies
- None
Suggested packages
Recommended additional packages
Provides
Virtual packages provided
- None
Description
Identify, Annotate and Visualize Alternative Splicing and
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | b1a7f03f…72a1f507 | match |
| SHA-1 | 204a7ed2…bda6745e | match |
| SHA-256 | b44f7033…f25f9d97 | match |
| SHA-512 | 949b5a32…eafcabaa | match |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/IsoformSwitchAnalyzeR usr/lib/R/site-library/IsoformSwitchAnalyzeR/CITATION usr/lib/R/site-library/IsoformSwitchAnalyzeR/DESCRIPTION usr/lib/R/site-library/IsoformSwitchAnalyzeR/INDEX usr/lib/R/site-library/IsoformSwitchAnalyzeR/Meta usr/lib/R/site-library/IsoformSwitchAnalyzeR/Meta/Rd.rds usr/lib/R/site-library/IsoformSwitchAnalyzeR/Meta/data.rds usr/lib/R/site-library/IsoformSwitchAnalyzeR/Meta/features.rds usr/lib/R/site-library/IsoformSwitchAnalyzeR/Meta/hsearch.rds usr/lib/R/site-library/IsoformSwitchAnalyzeR/Meta/links.rds usr/lib/R/site-library/IsoformSwitchAnalyzeR/Meta/nsInfo.rds usr/lib/R/site-library/IsoformSwitchAnalyzeR/Meta/package.rds usr/lib/R/site-library/IsoformSwitchAnalyzeR/Meta/vignette.rds usr/lib/R/site-library/IsoformSwitchAnalyzeR/NAMESPACE usr/lib/R/site-library/IsoformSwitchAnalyzeR/NEWS usr/lib/R/site-library/IsoformSwitchAnalyzeR/R usr/lib/R/site-library/IsoformSwitchAnalyzeR/R/IsoformSwitchAnalyzeR usr/lib/R/site-library/IsoformSwitchAnalyzeR/R/IsoformSwitchAnalyzeR.rdb usr/lib/R/site-library/IsoformSwitchAnalyzeR/R/IsoformSwitchAnalyzeR.rdx usr/lib/R/site-library/IsoformSwitchAnalyzeR/data usr/lib/R/site-library/IsoformSwitchAnalyzeR/data/datalist usr/lib/R/site-library/IsoformSwitchAnalyzeR/data/exampleSwitchList.RData usr/lib/R/site-library/IsoformSwitchAnalyzeR/data/exampleSwitchListAnalyzed.RData usr/lib/R/site-library/IsoformSwitchAnalyzeR/data/exampleSwitchListIntermediary.RData usr/lib/R/site-library/IsoformSwitchAnalyzeR/doc usr/lib/R/site-library/IsoformSwitchAnalyzeR/doc/IsoformSwitchAnalyzeR.R usr/lib/R/site-library/IsoformSwitchAnalyzeR/doc/IsoformSwitchAnalyzeR.Rmd usr/lib/R/site-library/IsoformSwitchAnalyzeR/doc/index.html usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/DeepTMHMM.gff3 usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/Fibroblasts_0 usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/Fibroblasts_0/quant.sf.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/Fibroblasts_1 usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/Fibroblasts_1/quant.sf.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/cpat_results.txt usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/cpc2_result.txt usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/deeploc2.csv usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond1_rep1 usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond1_rep1/aux_info usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond1_rep1/aux_info/meta_info.json usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond1_rep1/cmd_info.json usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond1_rep1/quant.sf.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond1_rep2 usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond1_rep2/aux_info usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond1_rep2/aux_info/meta_info.json usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond1_rep2/cmd_info.json usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond1_rep2/quant.sf.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond2_rep1 usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond2_rep1/aux_info usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond2_rep1/aux_info/meta_info.json usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond2_rep1/cmd_info.json usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond2_rep1/quant.sf.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond2_rep2 usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond2_rep2/aux_info usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond2_rep2/aux_info/meta_info.json usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond2_rep2/cmd_info.json usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/drosophila/data_cond2_rep2/quant.sf.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/example.gtf.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/example_isoform_nt.fasta.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/hESC_0 usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/hESC_0/quant.sf.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/hESC_1 usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/hESC_1/quant.sf.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/iPS_0 usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/iPS_0/quant.sf.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/iPS_1 usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/iPS_1/quant.sf.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/iupred2a_result.txt.gz usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/pfam_results.txt usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/signalP_results.txt usr/lib/R/site-library/IsoformSwitchAnalyzeR/help usr/lib/R/site-library/IsoformSwitchAnalyzeR/help/AnIndex usr/lib/R/site-library/IsoformSwitchAnalyzeR/help/IsoformSwitchAnalyzeR.rdb usr/lib/R/site-library/IsoformSwitchAnalyzeR/help/IsoformSwitchAnalyzeR.rdx usr/lib/R/site-library/IsoformSwitchAnalyzeR/help/aliases.rds usr/lib/R/site-library/IsoformSwitchAnalyzeR/help/paths.rds usr/lib/R/site-library/IsoformSwitchAnalyzeR/html usr/lib/R/site-library/IsoformSwitchAnalyzeR/html/00Index.html usr/lib/R/site-library/IsoformSwitchAnalyzeR/html/R.css usr/lib/R/site-library/IsoformSwitchAnalyzeR/libs usr/lib/R/site-library/IsoformSwitchAnalyzeR/libs/IsoformSwitchAnalyzeR.so usr/share usr/share/doc usr/share/doc/r-bioc-isoformswitchanalyzer usr/share/doc/r-bioc-isoformswitchanalyzer/changelog.Debian.gz usr/share/doc/r-bioc-isoformswitchanalyzer/copyright