tnseq-transit (3.3.12-1build1)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- resolute
- Component
- universe
- Source
- tnseq-transit
- Architecture
- amd64v3
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 100.7 MB
- Size expected
- 17.9 MB
- Size actual
- 17.9 MB
- Size match
- match
Dependencies
Required package dependencies
Recommends
Recommended package dependencies
- None
Suggested packages
Recommended additional packages
- None
Provides
Virtual packages provided
Description
statistical calculations of essentiality of genes or genomic regions
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 6f58adc1…bb5be225 | not available |
| SHA-1 | 7d4e445a…c979eb20 | not available |
| SHA-256 | cee1b138…ea14ed13 | not available |
| SHA-512 | fb0899ea…feea23a2 | match |
Contents
Files and directories included
. usr usr/bin usr/bin/transit usr/bin/transit-tpp usr/lib usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/pytpp usr/lib/python3/dist-packages/pytpp/__init__.py usr/lib/python3/dist-packages/pytpp/__main__.py usr/lib/python3/dist-packages/pytpp/tpp_gui.py usr/lib/python3/dist-packages/pytpp/tpp_tools.py usr/lib/python3/dist-packages/pytransit usr/lib/python3/dist-packages/pytransit/DejaVuSans.ttf usr/lib/python3/dist-packages/pytransit/__init__.py usr/lib/python3/dist-packages/pytransit/__main__.py usr/lib/python3/dist-packages/pytransit/analysis usr/lib/python3/dist-packages/pytransit/analysis/CGI.py usr/lib/python3/dist-packages/pytransit/analysis/__init__.py usr/lib/python3/dist-packages/pytransit/analysis/anova.py usr/lib/python3/dist-packages/pytransit/analysis/base.py usr/lib/python3/dist-packages/pytransit/analysis/binomial.py usr/lib/python3/dist-packages/pytransit/analysis/corrplot.py usr/lib/python3/dist-packages/pytransit/analysis/example.py usr/lib/python3/dist-packages/pytransit/analysis/gi.py usr/lib/python3/dist-packages/pytransit/analysis/griffin.py usr/lib/python3/dist-packages/pytransit/analysis/gumbel.py usr/lib/python3/dist-packages/pytransit/analysis/heatmap.py usr/lib/python3/dist-packages/pytransit/analysis/hmm.py usr/lib/python3/dist-packages/pytransit/analysis/norm.py usr/lib/python3/dist-packages/pytransit/analysis/normalize.py usr/lib/python3/dist-packages/pytransit/analysis/pathway_enrichment.py usr/lib/python3/dist-packages/pytransit/analysis/rankproduct.py usr/lib/python3/dist-packages/pytransit/analysis/resampling.py usr/lib/python3/dist-packages/pytransit/analysis/tn5gaps.py usr/lib/python3/dist-packages/pytransit/analysis/tnseq_stats.py usr/lib/python3/dist-packages/pytransit/analysis/ttnfitness.py usr/lib/python3/dist-packages/pytransit/analysis/utest.py usr/lib/python3/dist-packages/pytransit/analysis/zinb.py usr/lib/python3/dist-packages/pytransit/convert usr/lib/python3/dist-packages/pytransit/convert/__init__.py usr/lib/python3/dist-packages/pytransit/convert/base.py usr/lib/python3/dist-packages/pytransit/convert/gff_to_prot_table.py usr/lib/python3/dist-packages/pytransit/data usr/lib/python3/dist-packages/pytransit/data/CGI usr/lib/python3/dist-packages/pytransit/data/CGI/IDs.H37Rv.CRISPRi.lib.txt usr/lib/python3/dist-packages/pytransit/data/CGI/RIF_D1_combined_counts.txt usr/lib/python3/dist-packages/pytransit/data/CGI/samples_metadata.txt usr/lib/python3/dist-packages/pytransit/data/CGI/sgRNA_info.txt usr/lib/python3/dist-packages/pytransit/data/CGI/uninduced_ATC_counts.txt usr/lib/python3/dist-packages/pytransit/data/COG_roles.dat usr/lib/python3/dist-packages/pytransit/data/GO_associated_Rvs-3-11-18.txt usr/lib/python3/dist-packages/pytransit/data/GO_associated_Rvs.csv usr/lib/python3/dist-packages/pytransit/data/GO_term_names.dat usr/lib/python3/dist-packages/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt usr/lib/python3/dist-packages/pytransit/data/H37Rv.sanger_associated_RVS.csv usr/lib/python3/dist-packages/pytransit/data/H37Rv_COG_roles.dat usr/lib/python3/dist-packages/pytransit/data/H37Rv_GO_terms.txt usr/lib/python3/dist-packages/pytransit/data/H37Rv_sanger_roles.dat usr/lib/python3/dist-packages/pytransit/data/README.md usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_merged.wig usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep1.wig usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep2.wig usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep3.wig usr/lib/python3/dist-packages/pytransit/data/cholesterol_glycerol_combined.dat usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_merged.wig usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_rep1.wig usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_rep2.wig usr/lib/python3/dist-packages/pytransit/data/iron_combined_wig4.txt usr/lib/python3/dist-packages/pytransit/data/iron_samples_metadata.txt usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg.txt usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg_covar.txt usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg_interactions.txt usr/lib/python3/dist-packages/pytransit/data/sanger_roles.dat usr/lib/python3/dist-packages/pytransit/data/smeg_COG_roles.dat usr/lib/python3/dist-packages/pytransit/data/smeg_GO_terms.txt usr/lib/python3/dist-packages/pytransit/draw_trash.py usr/lib/python3/dist-packages/pytransit/export usr/lib/python3/dist-packages/pytransit/export/__init__.py usr/lib/python3/dist-packages/pytransit/export/base.py usr/lib/python3/dist-packages/pytransit/export/combined_wig.py usr/lib/python3/dist-packages/pytransit/export/igv.py usr/lib/python3/dist-packages/pytransit/export/mean_counts.py usr/lib/python3/dist-packages/pytransit/export/prot_table.py usr/lib/python3/dist-packages/pytransit/fileDisplay.py usr/lib/python3/dist-packages/pytransit/generic_tools usr/lib/python3/dist-packages/pytransit/generic_tools/__init__.py usr/lib/python3/dist-packages/pytransit/generic_tools/file_system_py.py usr/lib/python3/dist-packages/pytransit/genomes usr/lib/python3/dist-packages/pytransit/genomes/BCG.fna usr/lib/python3/dist-packages/pytransit/genomes/BCG.prot_table usr/lib/python3/dist-packages/pytransit/genomes/H37Rv.fna usr/lib/python3/dist-packages/pytransit/genomes/H37Rv.prot_table usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD.fna usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD.prot_table usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD_mod3.prot_table usr/lib/python3/dist-packages/pytransit/genomes/H37RvMA2.fna usr/lib/python3/dist-packages/pytransit/genomes/H37RvMA2.prot_table usr/lib/python3/dist-packages/pytransit/genomes/genomes.html usr/lib/python3/dist-packages/pytransit/genomes/mc2_155_tamu.fna usr/lib/python3/dist-packages/pytransit/genomes/mc2_155_tamu.prot_table usr/lib/python3/dist-packages/pytransit/images.py usr/lib/python3/dist-packages/pytransit/norm_tools.py usr/lib/python3/dist-packages/pytransit/qcDisplay.py usr/lib/python3/dist-packages/pytransit/stat_tools.py usr/lib/python3/dist-packages/pytransit/tnseq_tools.py usr/lib/python3/dist-packages/pytransit/transit_gui.py usr/lib/python3/dist-packages/pytransit/transit_tools.py usr/lib/python3/dist-packages/pytransit/trash.py usr/lib/python3/dist-packages/pytransit/view_trash.py usr/lib/python3/dist-packages/transit1-3.3.12.egg-info usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/PKG-INFO usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/dependency_links.txt usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/entry_points.txt usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/requires.txt usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/top_level.txt usr/share usr/share/doc usr/share/doc/tnseq-transit usr/share/doc/tnseq-transit/README.Debian usr/share/doc/tnseq-transit/changelog.Debian.gz usr/share/doc/tnseq-transit/copyright usr/share/man usr/share/man/man1 usr/share/man/man1/transit-tpp.1.gz usr/share/man/man1/transit.1.gz