bali-phy (4.1+dfsg-1)

2 versions available in ubuntu/resolute/universe/arm64

Details

Core information at a glance

Distribution
ubuntu
Origin
ubuntu-resolute-ports
Repository
https://ports.ubuntu.com
Codename
resolute
Component
universe
Source
bali-phy
Architecture
arm64
Section
universe/science
Priority
optional
Maintainer
Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
28.6 MB
Size expected
8.2 MB
Size actual
8.2 MB
Size match
match

Dependencies

Required package dependencies

Recommends

Recommended package dependencies

Suggested packages

Recommended additional packages

Provides

Virtual packages provided

  • None

Description

Bayesian Inference of Alignment and Phylogeny

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD55f13a0e5…6297ba40not available
SHA-15283ad9f…a8fa37d9not available
SHA-2568b71f68d…38ce70a5not available
SHA-512eae2f8ca…e9cff847match

Contents

Files and directories included

.
usr
usr/bin
usr/bin/alignment-cat
usr/bin/alignment-chop-internal
usr/bin/alignment-consensus
usr/bin/alignment-distances
usr/bin/alignment-draw
usr/bin/alignment-find
usr/bin/alignment-gild
usr/bin/alignment-indices
usr/bin/alignment-info
usr/bin/alignment-max
usr/bin/alignment-thin
usr/bin/alignment-translate
usr/bin/alignments-diff
usr/bin/bali-phy
usr/bin/bali-phy-pkg
usr/bin/bali-subsample
usr/bin/bp-analyze
usr/bin/cut-range
usr/bin/draw-tree
usr/bin/extract-ancestors
usr/bin/mcon-tool
usr/bin/mctree-mean-lengths
usr/bin/model_P
usr/bin/pickout
usr/bin/statreport
usr/bin/stats-select
usr/bin/summarize-ancestors
usr/bin/tree-mean-lengths
usr/bin/tree-tool
usr/bin/trees-bootstrap
usr/bin/trees-consensus
usr/bin/trees-distances
usr/bin/trees-to-SRQ
usr/lib
usr/lib/bali-phy
usr/lib/bali-phy/Alignment.so
usr/lib/bali-phy/Alphabet.so
usr/lib/bali-phy/Array.so
usr/lib/bali-phy/Bits.so
usr/lib/bali-phy/Char.so
usr/lib/bali-phy/Data.so
usr/lib/bali-phy/Distribution.so
usr/lib/bali-phy/Environment.so
usr/lib/bali-phy/File.so
usr/lib/bali-phy/Foreign.so
usr/lib/bali-phy/IntMap.so
usr/lib/bali-phy/IntSet.so
usr/lib/bali-phy/Likelihood.so
usr/lib/bali-phy/LikelihoodSEV.so
usr/lib/bali-phy/MCMC.so
usr/lib/bali-phy/Matrix.so
usr/lib/bali-phy/Modifiables.so
usr/lib/bali-phy/Num.so
usr/lib/bali-phy/Pair.so
usr/lib/bali-phy/Parsimony.so
usr/lib/bali-phy/PopGen.so
usr/lib/bali-phy/Prelude.so
usr/lib/bali-phy/Range.so
usr/lib/bali-phy/Real.so
usr/lib/bali-phy/SMC.so
usr/lib/bali-phy/SModel.so
usr/lib/bali-phy/Text.so
usr/lib/bali-phy/TreeDist.so
usr/lib/bali-phy/Vector.so
usr/lib/bali-phy/bindings
usr/lib/bali-phy/bindings/distributions
usr/lib/bali-phy/bindings/distributions/bernoulli.json
usr/lib/bali-phy/bindings/distributions/beta.json
usr/lib/bali-phy/bindings/distributions/binomial.json
usr/lib/bali-phy/bindings/distributions/cauchy.json
usr/lib/bali-phy/bindings/distributions/dirichlet.json
usr/lib/bali-phy/bindings/distributions/dirichlet_mixture.json
usr/lib/bali-phy/bindings/distributions/dirichlet_on.json
usr/lib/bali-phy/bindings/distributions/dirichlet_on_dirichlet.json
usr/lib/bali-phy/bindings/distributions/exponential.json
usr/lib/bali-phy/bindings/distributions/fixed_topology_tree.json
usr/lib/bali-phy/bindings/distributions/gamma.json
usr/lib/bali-phy/bindings/distributions/geometric.json
usr/lib/bali-phy/bindings/distributions/iid.json
usr/lib/bali-phy/bindings/distributions/iidMap.json
usr/lib/bali-phy/bindings/distributions/iid_on.json
usr/lib/bali-phy/bindings/distributions/laplace.json
usr/lib/bali-phy/bindings/distributions/logCauchy.json
usr/lib/bali-phy/bindings/distributions/logGamma.json
usr/lib/bali-phy/bindings/distributions/logLaplace.json
usr/lib/bali-phy/bindings/distributions/logNormal.json
usr/lib/bali-phy/bindings/distributions/normal.json
usr/lib/bali-phy/bindings/distributions/poisson.json
usr/lib/bali-phy/bindings/distributions/shifted_exponential.json
usr/lib/bali-phy/bindings/distributions/shifted_gamma.json
usr/lib/bali-phy/bindings/distributions/symmetric_dirichlet.json
usr/lib/bali-phy/bindings/distributions/symmetric_dirichlet_on.json
usr/lib/bali-phy/bindings/distributions/uniform.json
usr/lib/bali-phy/bindings/distributions/uniform_int.json
usr/lib/bali-phy/bindings/distributions/uniform_rooted_tree.json
usr/lib/bali-phy/bindings/distributions/uniform_tree.json
usr/lib/bali-phy/bindings/distributions/yule.json
usr/lib/bali-phy/bindings/functions
usr/lib/bali-phy/bindings/functions/aa.json
usr/lib/bali-phy/bindings/functions/add.json
usr/lib/bali-phy/bindings/functions/branch_length.json
usr/lib/bali-phy/bindings/functions/branches.json
usr/lib/bali-phy/bindings/functions/branches_list.json
usr/lib/bali-phy/bindings/functions/cdf.json
usr/lib/bali-phy/bindings/functions/codonsOf.json
usr/lib/bali-phy/bindings/functions/constructors
usr/lib/bali-phy/bindings/functions/constructors/Cons.json
usr/lib/bali-phy/bindings/functions/constructors/Nil.json
usr/lib/bali-phy/bindings/functions/convertDiscrete.json
usr/lib/bali-phy/bindings/functions/cos.json
usr/lib/bali-phy/bindings/functions/discrete.json
usr/lib/bali-phy/bindings/functions/div.json
usr/lib/bali-phy/bindings/functions/dna.json
usr/lib/bali-phy/bindings/functions/doubletsOf.json
usr/lib/bali-phy/bindings/functions/exp.json
usr/lib/bali-phy/bindings/functions/getAminoAcids.json
usr/lib/bali-phy/bindings/functions/getNucleotides.json
usr/lib/bali-phy/bindings/functions/identity.json
usr/lib/bali-phy/bindings/functions/intToDouble.json
usr/lib/bali-phy/bindings/functions/length.json
usr/lib/bali-phy/bindings/functions/letter_pairs.json
usr/lib/bali-phy/bindings/functions/letters.json
usr/lib/bali-phy/bindings/functions/log.json
usr/lib/bali-phy/bindings/functions/lookup.json
usr/lib/bali-phy/bindings/functions/map.json
usr/lib/bali-phy/bindings/functions/max.json
usr/lib/bali-phy/bindings/functions/min.json
usr/lib/bali-phy/bindings/functions/mul.json
usr/lib/bali-phy/bindings/functions/n_components.json
usr/lib/bali-phy/bindings/functions/negate.json
usr/lib/bali-phy/bindings/functions/nodes.json
usr/lib/bali-phy/bindings/functions/nonreversible.json
usr/lib/bali-phy/bindings/functions/num_branches.json
usr/lib/bali-phy/bindings/functions/number_pairs.json
usr/lib/bali-phy/bindings/functions/ordered_letter_pairs.json
usr/lib/bali-phy/bindings/functions/pdf.json
usr/lib/bali-phy/bindings/functions/pow.json
usr/lib/bali-phy/bindings/functions/quantile.json
usr/lib/bali-phy/bindings/functions/replicate.json
usr/lib/bali-phy/bindings/functions/rna.json
usr/lib/bali-phy/bindings/functions/rnaEditsOf.json
usr/lib/bali-phy/bindings/functions/scaleBy.json
usr/lib/bali-phy/bindings/functions/scaleTo.json
usr/lib/bali-phy/bindings/functions/sin.json
usr/lib/bali-phy/bindings/functions/sort.json
usr/lib/bali-phy/bindings/functions/sqrt.json
usr/lib/bali-phy/bindings/functions/standard_code.json
usr/lib/bali-phy/bindings/functions/sub.json
usr/lib/bali-phy/bindings/functions/take.json
usr/lib/bali-phy/bindings/functions/tan.json
usr/lib/bali-phy/bindings/functions/tripletsOf.json
usr/lib/bali-phy/bindings/functions/uniform_discretize.json
usr/lib/bali-phy/bindings/functions/unit_mixture.json
usr/lib/bali-phy/bindings/functions/zip.json
usr/lib/bali-phy/bindings/functions/zipWith.json
usr/lib/bali-phy/bindings/models
usr/lib/bali-phy/bindings/models/Covarion
usr/lib/bali-phy/bindings/models/Covarion/galtier01.json
usr/lib/bali-phy/bindings/models/Covarion/gtr.json
usr/lib/bali-phy/bindings/models/Covarion/huelsenbeck02.json
usr/lib/bali-phy/bindings/models/Covarion/huelsenbeck02_test.json
usr/lib/bali-phy/bindings/models/Covarion/huelsenbeck02_two.json
usr/lib/bali-phy/bindings/models/Covarion/multi_freq.json
usr/lib/bali-phy/bindings/models/Covarion/ts98.json
usr/lib/bali-phy/bindings/models/Covarion/wang07.json
usr/lib/bali-phy/bindings/models/Frequencies
usr/lib/bali-phy/bindings/models/Frequencies/uniform.json
usr/lib/bali-phy/bindings/models/Rates
usr/lib/bali-phy/bindings/models/Rates/free.json
usr/lib/bali-phy/bindings/models/Rates/gamma.json
usr/lib/bali-phy/bindings/models/Rates/log_normal.json
usr/lib/bali-phy/bindings/models/branch_site.json
usr/lib/bali-phy/bindings/models/branch_site_mixture.json
usr/lib/bali-phy/bindings/models/busted.json
usr/lib/bali-phy/bindings/models/busted_s.json
usr/lib/bali-phy/bindings/models/dNdS.json
usr/lib/bali-phy/bindings/models/density.json
usr/lib/bali-phy/bindings/models/empirical.json
usr/lib/bali-phy/bindings/models/equ.json
usr/lib/bali-phy/bindings/models/f.json
usr/lib/bali-phy/bindings/models/f1x4.json
usr/lib/bali-phy/bindings/models/f3x4.json
usr/lib/bali-phy/bindings/models/f61.json
usr/lib/bali-phy/bindings/models/f81.json
usr/lib/bali-phy/bindings/models/fMutSel.json
usr/lib/bali-phy/bindings/models/fMutSel0.json
usr/lib/bali-phy/bindings/models/fe.json
usr/lib/bali-phy/bindings/models/get_q.json
usr/lib/bali-phy/bindings/models/gtr.json
usr/lib/bali-phy/bindings/models/gtr_sym.json
usr/lib/bali-phy/bindings/models/gwF.json
usr/lib/bali-phy/bindings/models/gy94.json
usr/lib/bali-phy/bindings/models/gy94_ext.json
usr/lib/bali-phy/bindings/models/hky85.json
usr/lib/bali-phy/bindings/models/hky85_sym.json
usr/lib/bali-phy/bindings/models/inv.json
usr/lib/bali-phy/bindings/models/jc69.json
usr/lib/bali-phy/bindings/models/jtt.json
usr/lib/bali-phy/bindings/models/k80.json
usr/lib/bali-phy/bindings/models/lg08.json
usr/lib/bali-phy/bindings/models/lg08_freq.json
usr/lib/bali-phy/bindings/models/m1a.json
usr/lib/bali-phy/bindings/models/m2a.json
usr/lib/bali-phy/bindings/models/m2a_test.json
usr/lib/bali-phy/bindings/models/m3.json
usr/lib/bali-phy/bindings/models/m3_test.json
usr/lib/bali-phy/bindings/models/m7.json
usr/lib/bali-phy/bindings/models/m8.json
usr/lib/bali-phy/bindings/models/m8a.json
usr/lib/bali-phy/bindings/models/m8a_test.json
usr/lib/bali-phy/bindings/models/markov_modulate_mixture.json
usr/lib/bali-phy/bindings/models/mg94.json
usr/lib/bali-phy/bindings/models/mg94_ext.json
usr/lib/bali-phy/bindings/models/mg94k.json
usr/lib/bali-phy/bindings/models/mixture.json
usr/lib/bali-phy/bindings/models/mnm.json
usr/lib/bali-phy/bindings/models/multiMixtureModel.json
usr/lib/bali-phy/bindings/models/multi_freq.json
usr/lib/bali-phy/bindings/models/multi_rate.json
usr/lib/bali-phy/bindings/models/multi_rs07.json
usr/lib/bali-phy/bindings/models/mut_sel.json
usr/lib/bali-phy/bindings/models/mut_sel_aa.json
usr/lib/bali-phy/bindings/models/nonEq.json
usr/lib/bali-phy/bindings/models/nonrev.json
usr/lib/bali-phy/bindings/models/pam.json
usr/lib/bali-phy/bindings/models/parameter_mixture.json
usr/lib/bali-phy/bindings/models/relaxed_rs07.json
usr/lib/bali-phy/bindings/models/rna_16a.json
usr/lib/bali-phy/bindings/models/rna_edit.json
usr/lib/bali-phy/bindings/models/rs05.json
usr/lib/bali-phy/bindings/models/rs07.json
usr/lib/bali-phy/bindings/models/rs07_relaxed_rates.json
usr/lib/bali-phy/bindings/models/sample.json
usr/lib/bali-phy/bindings/models/tn93.json
usr/lib/bali-phy/bindings/models/tn93_sym.json
usr/lib/bali-phy/bindings/models/wag.json
usr/lib/bali-phy/bindings/models/wag_freq.json
usr/lib/bali-phy/bindings/models/x2.json
usr/lib/bali-phy/bindings/models/x2_sym.json
usr/lib/bali-phy/bindings/models/x2x2.json
usr/lib/bali-phy/bindings/models/x3.json
usr/lib/bali-phy/bindings/models/x3_sym.json
usr/lib/bali-phy/bindings/models/x3x3.json
usr/lib/bali-phy/haskell
usr/lib/bali-phy/haskell/BAliPhy
usr/lib/bali-phy/haskell/BAliPhy/Util.hs
usr/lib/bali-phy/haskell/Bio
usr/lib/bali-phy/haskell/Bio/Alignment
usr/lib/bali-phy/haskell/Bio/Alignment/Class.hs
usr/lib/bali-phy/haskell/Bio/Alignment/Matrix.hs
usr/lib/bali-phy/haskell/Bio/Alignment/Pairwise.hs
usr/lib/bali-phy/haskell/Bio/Alignment.hs
usr/lib/bali-phy/haskell/Bio/Alphabet.hs
usr/lib/bali-phy/haskell/Bio/Sequence.hs
usr/lib/bali-phy/haskell/BirthDeath.hs
usr/lib/bali-phy/haskell/Compiler
usr/lib/bali-phy/haskell/Compiler/Base.hs
usr/lib/bali-phy/haskell/Compiler/Classes.hs
usr/lib/bali-phy/haskell/Compiler/Enum.hs
usr/lib/bali-phy/haskell/Compiler/Error.hs
usr/lib/bali-phy/haskell/Compiler/Floating.hs
usr/lib/bali-phy/haskell/Compiler/Fractional.hs
usr/lib/bali-phy/haskell/Compiler/IO.hs
usr/lib/bali-phy/haskell/Compiler/Integral.hs
usr/lib/bali-phy/haskell/Compiler/Num.hs
usr/lib/bali-phy/haskell/Compiler/Ratio.hs
usr/lib/bali-phy/haskell/Compiler/Real.hs
usr/lib/bali-phy/haskell/Compiler/RealFloat.hs
usr/lib/bali-phy/haskell/Compiler/RealFrac.hs
usr/lib/bali-phy/haskell/Compiler/ST.hs
usr/lib/bali-phy/haskell/Control
usr/lib/bali-phy/haskell/Control/Applicative.hs
usr/lib/bali-phy/haskell/Control/DeepSeq.hs
usr/lib/bali-phy/haskell/Control/Monad
usr/lib/bali-phy/haskell/Control/Monad/Fix.hs
usr/lib/bali-phy/haskell/Control/Monad/IO
usr/lib/bali-phy/haskell/Control/Monad/IO/Class.hs
usr/lib/bali-phy/haskell/Control/Monad/State.hs
usr/lib/bali-phy/haskell/Control/Monad.hs
usr/lib/bali-phy/haskell/Data
usr/lib/bali-phy/haskell/Data/Array.hs
usr/lib/bali-phy/haskell/Data/BitVector.hs
usr/lib/bali-phy/haskell/Data/Bool.hs
usr/lib/bali-phy/haskell/Data/ByteString.hs
usr/lib/bali-phy/haskell/Data/CSV.hs
usr/lib/bali-phy/haskell/Data/Char.hs
usr/lib/bali-phy/haskell/Data/Either.hs
usr/lib/bali-phy/haskell/Data/Eq.hs
usr/lib/bali-phy/haskell/Data/Exception.hs
usr/lib/bali-phy/haskell/Data/Floating
usr/lib/bali-phy/haskell/Data/Floating/Classes.hs
usr/lib/bali-phy/haskell/Data/Floating/Types.hs
usr/lib/bali-phy/haskell/Data/Floating.hs
usr/lib/bali-phy/haskell/Data/Foldable.hs
usr/lib/bali-phy/haskell/Data/Frame.hs
usr/lib/bali-phy/haskell/Data/Function.hs
usr/lib/bali-phy/haskell/Data/Functor.hs
usr/lib/bali-phy/haskell/Data/IORef.hs
usr/lib/bali-phy/haskell/Data/IntMap.hs
usr/lib/bali-phy/haskell/Data/IntSet.hs
usr/lib/bali-phy/haskell/Data/Ix.hs
usr/lib/bali-phy/haskell/Data/JSON.hs
usr/lib/bali-phy/haskell/Data/List
usr/lib/bali-phy/haskell/Data/List/NonEmpty.hs
usr/lib/bali-phy/haskell/Data/List.hs
usr/lib/bali-phy/haskell/Data/Map.hs
usr/lib/bali-phy/haskell/Data/Matrix.hs
usr/lib/bali-phy/haskell/Data/Maybe.hs
usr/lib/bali-phy/haskell/Data/Monoid.hs
usr/lib/bali-phy/haskell/Data/Nat.hs
usr/lib/bali-phy/haskell/Data/OldList.hs
usr/lib/bali-phy/haskell/Data/Ord.hs
usr/lib/bali-phy/haskell/Data/Poset.hs
usr/lib/bali-phy/haskell/Data/Ratio.hs
usr/lib/bali-phy/haskell/Data/Semigroup.hs
usr/lib/bali-phy/haskell/Data/Set.hs
usr/lib/bali-phy/haskell/Data/String.hs
usr/lib/bali-phy/haskell/Data/Text
usr/lib/bali-phy/haskell/Data/Text/Display.hs
usr/lib/bali-phy/haskell/Data/Text/Encoding.hs
usr/lib/bali-phy/haskell/Data/Text/IO.hs
usr/lib/bali-phy/haskell/Data/Text.hs
usr/lib/bali-phy/haskell/Data/Traversable.hs
usr/lib/bali-phy/haskell/Data/Tuple.hs
usr/lib/bali-phy/haskell/Data/Type
usr/lib/bali-phy/haskell/Data/Type/Bool.hs
usr/lib/bali-phy/haskell/Data/Typeable.hs
usr/lib/bali-phy/haskell/Data/Unique
usr/lib/bali-phy/haskell/Data/Unique/Id.hs
usr/lib/bali-phy/haskell/Data/Unique.hs
usr/lib/bali-phy/haskell/Data/Word.hs
usr/lib/bali-phy/haskell/Effect.hs
usr/lib/bali-phy/haskell/EigenExp.hs
usr/lib/bali-phy/haskell/Foreign
usr/lib/bali-phy/haskell/Foreign/CList.hs
usr/lib/bali-phy/haskell/Foreign/IntMap.hs
usr/lib/bali-phy/haskell/Foreign/Introspection.hs
usr/lib/bali-phy/haskell/Foreign/Maybe.hs
usr/lib/bali-phy/haskell/Foreign/Pair.hs
usr/lib/bali-phy/haskell/Foreign/String.hs
usr/lib/bali-phy/haskell/Foreign/Vector.hs
usr/lib/bali-phy/haskell/Forest.hs
usr/lib/bali-phy/haskell/Graph.hs
usr/lib/bali-phy/haskell/IModel.hs
usr/lib/bali-phy/haskell/MCMC
usr/lib/bali-phy/haskell/MCMC/Loggers.hs
usr/lib/bali-phy/haskell/MCMC/Moves
usr/lib/bali-phy/haskell/MCMC/Moves/Alignment.hs
usr/lib/bali-phy/haskell/MCMC/Moves/Context.hs
usr/lib/bali-phy/haskell/MCMC/Moves/Integer.hs
usr/lib/bali-phy/haskell/MCMC/Moves/MH.hs
usr/lib/bali-phy/haskell/MCMC/Moves/Real.hs
usr/lib/bali-phy/haskell/MCMC/Moves/Tree.hs
usr/lib/bali-phy/haskell/MCMC/Moves.hs
usr/lib/bali-phy/haskell/MCMC/Types.hs
usr/lib/bali-phy/haskell/MCMC.hs
usr/lib/bali-phy/haskell/Markov.hs
usr/lib/bali-phy/haskell/Numeric
usr/lib/bali-phy/haskell/Numeric/Log.hs
usr/lib/bali-phy/haskell/Numeric/LogDouble.hs
usr/lib/bali-phy/haskell/Numeric/Natural.hs
usr/lib/bali-phy/haskell/Numeric/Prob.hs
usr/lib/bali-phy/haskell/Parameters.hs
usr/lib/bali-phy/haskell/Parse.hs
usr/lib/bali-phy/haskell/PopGen
usr/lib/bali-phy/haskell/PopGen/Deploid.hs
usr/lib/bali-phy/haskell/PopGen.hs
usr/lib/bali-phy/haskell/Prelude.hs
usr/lib/bali-phy/haskell/Probability
usr/lib/bali-phy/haskell/Probability/Dist.hs
usr/lib/bali-phy/haskell/Probability/Distribution
usr/lib/bali-phy/haskell/Probability/Distribution/Bernoulli.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Beta.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Binomial.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Categorical.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Cauchy.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Changepoints.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Dirichlet.hs
usr/lib/bali-phy/haskell/Probability/Distribution/DirichletProcess.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Discrete.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Exponential.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Gamma.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Geometric.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Independent.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Laplace.hs
usr/lib/bali-phy/haskell/Probability/Distribution/List.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Markov.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Mixture.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Multinomial.hs
usr/lib/bali-phy/haskell/Probability/Distribution/NegativeBinomial.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Normal.hs
usr/lib/bali-phy/haskell/Probability/Distribution/PairwiseAlignment.hs
usr/lib/bali-phy/haskell/Probability/Distribution/PhyloAlignment.hs
usr/lib/bali-phy/haskell/Probability/Distribution/PhyloCTMC
usr/lib/bali-phy/haskell/Probability/Distribution/PhyloCTMC/FixedA.hs
usr/lib/bali-phy/haskell/Probability/Distribution/PhyloCTMC/PhyloCTMC.hs
usr/lib/bali-phy/haskell/Probability/Distribution/PhyloCTMC/Properties.hs
usr/lib/bali-phy/haskell/Probability/Distribution/PhyloCTMC/VariableA.hs
usr/lib/bali-phy/haskell/Probability/Distribution/PhyloCTMC.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Poisson.hs
usr/lib/bali-phy/haskell/Probability/Distribution/RecDist.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Shifted.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Transform.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Tree
usr/lib/bali-phy/haskell/Probability/Distribution/Tree/BirthDeath.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Tree/BirthDeath2.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Tree/Coalescent.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Tree/Modifiable.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Tree/Moves.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Tree/UniformTimeTree.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Tree/UniformTopology.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Tree/Util.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Tree/Yule.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Tree.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Tuple.hs
usr/lib/bali-phy/haskell/Probability/Distribution/Uniform.hs
usr/lib/bali-phy/haskell/Probability/Distribution/UniqueDist.hs
usr/lib/bali-phy/haskell/Probability/Logger.hs
usr/lib/bali-phy/haskell/Probability/Random.hs
usr/lib/bali-phy/haskell/Probability.hs
usr/lib/bali-phy/haskell/Range.hs
usr/lib/bali-phy/haskell/SMC.hs
usr/lib/bali-phy/haskell/SModel
usr/lib/bali-phy/haskell/SModel/ASRV.hs
usr/lib/bali-phy/haskell/SModel/BranchModel.hs
usr/lib/bali-phy/haskell/SModel/BranchSiteMixture.hs
usr/lib/bali-phy/haskell/SModel/Codons.hs
usr/lib/bali-phy/haskell/SModel/Doublets.hs
usr/lib/bali-phy/haskell/SModel/Empirical.hs
usr/lib/bali-phy/haskell/SModel/Frequency.hs
usr/lib/bali-phy/haskell/SModel/Likelihood
usr/lib/bali-phy/haskell/SModel/Likelihood/CLV.hs
usr/lib/bali-phy/haskell/SModel/Likelihood/FixedA.hs
usr/lib/bali-phy/haskell/SModel/Likelihood/VariableA.hs
usr/lib/bali-phy/haskell/SModel/Markov.hs
usr/lib/bali-phy/haskell/SModel/MarkovModulated.hs
usr/lib/bali-phy/haskell/SModel/MixtureModel.hs
usr/lib/bali-phy/haskell/SModel/MixtureModels.hs
usr/lib/bali-phy/haskell/SModel/MultiFrequency.hs
usr/lib/bali-phy/haskell/SModel/MutSel.hs
usr/lib/bali-phy/haskell/SModel/NonReversibleMarkov.hs
usr/lib/bali-phy/haskell/SModel/Nucleotides.hs
usr/lib/bali-phy/haskell/SModel/Parsimony.hs
usr/lib/bali-phy/haskell/SModel/PosSelection.hs
usr/lib/bali-phy/haskell/SModel/RNAEdit.hs
usr/lib/bali-phy/haskell/SModel/Rate.hs
usr/lib/bali-phy/haskell/SModel/ReversibleMarkov.hs
usr/lib/bali-phy/haskell/SModel/Simple.hs
usr/lib/bali-phy/haskell/SModel.hs
usr/lib/bali-phy/haskell/System
usr/lib/bali-phy/haskell/System/Directory.hs
usr/lib/bali-phy/haskell/System/Environment.hs
usr/lib/bali-phy/haskell/System/FilePath.hs
usr/lib/bali-phy/haskell/System/IO.hs
usr/lib/bali-phy/haskell/Text
usr/lib/bali-phy/haskell/Text/Read.hs
usr/lib/bali-phy/haskell/Text/Show.hs
usr/lib/bali-phy/haskell/Tree
usr/lib/bali-phy/haskell/Tree/Newick.hs
usr/lib/bali-phy/haskell/Tree.hs
usr/lib/bali-phy/help
usr/lib/bali-phy/help/alphabets
usr/lib/bali-phy/help/alphabets/Codons.txt
usr/lib/bali-phy/help/alphabets/Doublets.txt
usr/lib/bali-phy/help/alphabets/Triplets.txt
usr/lib/bali-phy/help/alphabets/genetic-code.txt
usr/lib/bali-phy/help/alphabets.txt
usr/lib/bali-phy/help/commands
usr/lib/bali-phy/help/commands/Rao-Blackwellize.txt
usr/lib/bali-phy/help/commands/align.txt
usr/lib/bali-phy/help/commands/alphabet.txt
usr/lib/bali-phy/help/commands/config.txt
usr/lib/bali-phy/help/commands/disable.txt
usr/lib/bali-phy/help/commands/enable.txt
usr/lib/bali-phy/help/commands/fix.txt
usr/lib/bali-phy/help/commands/imodel.txt
usr/lib/bali-phy/help/commands/iterations.txt
usr/lib/bali-phy/help/commands/link.txt
usr/lib/bali-phy/help/commands/model.txt
usr/lib/bali-phy/help/commands/name.txt
usr/lib/bali-phy/help/commands/package-path.txt
usr/lib/bali-phy/help/commands/pre-burnin.txt
usr/lib/bali-phy/help/commands/print.txt
usr/lib/bali-phy/help/commands/scale.txt
usr/lib/bali-phy/help/commands/seed.txt
usr/lib/bali-phy/help/commands/set.txt
usr/lib/bali-phy/help/commands/smodel.txt
usr/lib/bali-phy/help/commands/subsample.txt
usr/lib/bali-phy/help/commands/test.txt
usr/lib/bali-phy/help/commands/tree.txt
usr/lib/bali-phy/help/commands/unalign.txt
usr/lib/bali-phy/help/commands/verbose.txt
usr/lib/bali-phy/help/commands/version.txt
usr/lib/bali-phy/help/parameters
usr/lib/bali-phy/help/parameters/priors.txt
usr/lib/bali-phy/help/parameters.txt
usr/lib/bali-phy/libexec
usr/lib/bali-phy/libexec/compare-runs.R
usr/lib/bali-phy/libexec/compare-runs2.R
usr/lib/bali-phy/libexec/tree-plot-3D.R
usr/lib/bali-phy/libexec/tree-plot.R
usr/share
usr/share/doc
usr/share/doc/bali-phy
usr/share/doc/bali-phy/README.test
usr/share/doc/bali-phy/changelog.Debian.gz
usr/share/doc/bali-phy/copyright
usr/share/doc/bali-phy/examples
usr/share/doc/bali-phy/examples/5S-rRNA
usr/share/doc/bali-phy/examples/5S-rRNA/25-GTR-LN8-WPD.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/25-GTR-LN8-c50.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/25-GTR-LN8-c50.tree
usr/share/doc/bali-phy/examples/5S-rRNA/25-clustalw.dnd
usr/share/doc/bali-phy/examples/5S-rRNA/25-clustalw.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/25-dialign2-2.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/25-fsa.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/25-fsa.ph
usr/share/doc/bali-phy/examples/5S-rRNA/25-muscle.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/25-muscle5.FastTree.tree
usr/share/doc/bali-phy/examples/5S-rRNA/25-muscle5.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/25-poy.command
usr/share/doc/bali-phy/examples/5S-rRNA/25-poy.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/25-poy.tree
usr/share/doc/bali-phy/examples/5S-rRNA/25-poy.trees
usr/share/doc/bali-phy/examples/5S-rRNA/25-probcons-RNA-trained.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/25-probcons-RNA.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/25-t-coffee.dnd
usr/share/doc/bali-phy/examples/5S-rRNA/25-t-coffee.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/25-tcoffee.dnd
usr/share/doc/bali-phy/examples/5S-rRNA/25-tcoffee.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/25.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/48-GTR-DP6-MAP.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/48-GTR-DP6-MAP.tree
usr/share/doc/bali-phy/examples/5S-rRNA/48-GTR-DP6-WPD.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/48-GTR-DP6-c10.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/48-GTR-DP6-consensus.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/48-clustalw.dnd
usr/share/doc/bali-phy/examples/5S-rRNA/48-clustalw.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/48-dialign2-2.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/48-fsa.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/48-fsa.ph
usr/share/doc/bali-phy/examples/5S-rRNA/48-muscle.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/48-probcons-RNA-trained.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/48-probcons-RNA.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/48-t-coffee.dnd
usr/share/doc/bali-phy/examples/5S-rRNA/48-t-coffee.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/48.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/5d-clustalw.dnd
usr/share/doc/bali-phy/examples/5S-rRNA/5d-clustalw.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/5d-muscle.fasta
usr/share/doc/bali-phy/examples/5S-rRNA/5d.fasta
usr/share/doc/bali-phy/examples/Duplications
usr/share/doc/bali-phy/examples/Duplications/hisA-hisF
usr/share/doc/bali-phy/examples/Duplications/hisA-hisF/hisA-hisF-muscle.fasta
usr/share/doc/bali-phy/examples/Duplications/hisA-hisF/hisA-hisF-muscle.ph
usr/share/doc/bali-phy/examples/Duplications/hisA-hisF/hisA-muscle.fasta
usr/share/doc/bali-phy/examples/Duplications/hisA-hisF/hisA.fasta
usr/share/doc/bali-phy/examples/Duplications/hisA-hisF/hisF-muscle.fasta
usr/share/doc/bali-phy/examples/Duplications/hisA-hisF/hisF.fasta
usr/share/doc/bali-phy/examples/Duplications/trp-tyr
usr/share/doc/bali-phy/examples/Duplications/trp-tyr/trp-muscle.fasta
usr/share/doc/bali-phy/examples/Duplications/trp-tyr/trp-tyr-muscle.fasta
usr/share/doc/bali-phy/examples/Duplications/trp-tyr/trp.fasta
usr/share/doc/bali-phy/examples/Duplications/trp-tyr/tyr-muscle.fasta
usr/share/doc/bali-phy/examples/Duplications/trp-tyr/tyr.fasta
usr/share/doc/bali-phy/examples/EF-Tu
usr/share/doc/bali-phy/examples/EF-Tu/12d-clustalw.dnd
usr/share/doc/bali-phy/examples/EF-Tu/12d-clustalw.fasta
usr/share/doc/bali-phy/examples/EF-Tu/12d-muscle.fasta
usr/share/doc/bali-phy/examples/EF-Tu/12d.fasta
usr/share/doc/bali-phy/examples/EF-Tu/25-mafft.fasta
usr/share/doc/bali-phy/examples/EF-Tu/48b-clustalw.dnd
usr/share/doc/bali-phy/examples/EF-Tu/48b-clustalw.fasta
usr/share/doc/bali-phy/examples/EF-Tu/48b.fasta
usr/share/doc/bali-phy/examples/EF-Tu/5d-clustalw.dnd
usr/share/doc/bali-phy/examples/EF-Tu/5d-clustalw.fasta
usr/share/doc/bali-phy/examples/EF-Tu/5d-muscle.fasta
usr/share/doc/bali-phy/examples/EF-Tu/5d.fasta
usr/share/doc/bali-phy/examples/Enolase
usr/share/doc/bali-phy/examples/Enolase/enolase-38-trimmed.fasta
usr/share/doc/bali-phy/examples/Enolase/enolase-38.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/globins-fsa.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/globins-mafft.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/globins-muscle.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/globins-prank.1.dnd
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/globins-prank.1.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/globins-prank.2.dnd
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/globins-prank.2.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/globins.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/sod-fsa.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/sod-mafft.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/sod-muscle.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/sod-prank.1.dnd
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/sod-prank.1.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/sod-prank.2.dnd
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/sod-prank.2.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/sod.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/v-src-fsa.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/v-src-mafft.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/v-src-muscle.fasta
usr/share/doc/bali-phy/examples/Feng-Doolittle-1987/v-src.fasta
usr/share/doc/bali-phy/examples/Globins
usr/share/doc/bali-phy/examples/Globins/10-globins-Lunter.fasta
usr/share/doc/bali-phy/examples/Globins/10-globins.xml
usr/share/doc/bali-phy/examples/Globins/bglobin.fasta
usr/share/doc/bali-phy/examples/Globins/few-clustalw.dnd
usr/share/doc/bali-phy/examples/Globins/few-clustalw.fasta
usr/share/doc/bali-phy/examples/Globins/few-muscle.fasta
usr/share/doc/bali-phy/examples/Globins/few.fasta
usr/share/doc/bali-phy/examples/Globins/globins.fasta
usr/share/doc/bali-phy/examples/Globins/many-muscle.fasta
usr/share/doc/bali-phy/examples/Globins/many.fasta
usr/share/doc/bali-phy/examples/Globins/some.fasta
usr/share/doc/bali-phy/examples/HIV
usr/share/doc/bali-phy/examples/HIV/HIVSIV.fasta
usr/share/doc/bali-phy/examples/HIV/chain-2005
usr/share/doc/bali-phy/examples/HIV/chain-2005/env-clustal-codons.fasta
usr/share/doc/bali-phy/examples/HIV/chain-2005/env-clustal.fasta
usr/share/doc/bali-phy/examples/HIV/chain-2005/env-common.fasta
usr/share/doc/bali-phy/examples/HIV/chain-2005/env.fasta
usr/share/doc/bali-phy/examples/HIV/chain-2005/pol-clustal.fasta
usr/share/doc/bali-phy/examples/HIV/chain-2005/pol-common.fasta
usr/share/doc/bali-phy/examples/HIV/chain-2005/pol.fasta
usr/share/doc/bali-phy/examples/ITS
usr/share/doc/bali-phy/examples/ITS/5.8S.fasta
usr/share/doc/bali-phy/examples/ITS/ITS1-trimmed.fasta
usr/share/doc/bali-phy/examples/ITS/ITS2-trimmed.fasta
usr/share/doc/bali-phy/examples/Miklos-2008
usr/share/doc/bali-phy/examples/Miklos-2008/Src_homology_2_domains.fasta
usr/share/doc/bali-phy/examples/Miklos-2008/Starch_binding_domain.fasta
usr/share/doc/bali-phy/examples/Miklos-2008/annexin.fasta
usr/share/doc/bali-phy/examples/Miklos-2008/haloperoxidase.fasta
usr/share/doc/bali-phy/examples/Miklos-2008/lectin.fasta
usr/share/doc/bali-phy/examples/Miklos-2008/legume_lectin.fasta
usr/share/doc/bali-phy/examples/Miklos-2008/lysozyme.fasta
usr/share/doc/bali-phy/examples/Miklos-2008/papain.fasta
usr/share/doc/bali-phy/examples/Miklos-2008/parvalbumin-like.fasta
usr/share/doc/bali-phy/examples/Miklos-2008/rr_receiver.fasta
usr/share/doc/bali-phy/examples/Miklos-2008/subtilase.fasta
usr/share/doc/bali-phy/examples/Miklos-2008/xylose_isomerase.fasta
usr/share/doc/bali-phy/examples/ferns
usr/share/doc/bali-phy/examples/ferns/README.txt
usr/share/doc/bali-phy/examples/ferns/cleaned.fasta
usr/share/doc/bali-phy/examples/ferns/config.txt
usr/share/doc/bali-phy/examples/ferns/config2.txt
usr/share/doc/bali-phy/examples/ferns/orig.fasta
usr/share/doc/bali-phy/examples/ferns/orig.nex
usr/share/doc/bali-phy/examples/lrRNA
usr/share/doc/bali-phy/examples/lrRNA/NOTES.txt
usr/share/doc/bali-phy/examples/lrRNA/keep.pl
usr/share/doc/bali-phy/examples/lrRNA/mollusc.fasta
usr/share/doc/bali-phy/examples/lrRNA/mollusc.gb
usr/share/doc/bali-phy/examples/lrRNA/mollusc.rna.fasta
usr/share/doc/bali-phy/examples/lrRNA/mollusc12.fasta
usr/share/doc/bali-phy/examples/microbotryum
usr/share/doc/bali-phy/examples/microbotryum/30-clustalw.fasta
usr/share/doc/bali-phy/examples/microbotryum/30-clustalw.ph
usr/share/doc/bali-phy/examples/microbotryum/30-muscle.fasta
usr/share/doc/bali-phy/examples/microbotryum/30-muscle.ph
usr/share/doc/bali-phy/examples/microbotryum/30.aln
usr/share/doc/bali-phy/examples/microbotryum/30.dnd
usr/share/doc/bali-phy/examples/microbotryum/30.fasta
usr/share/doc/bali-phy/examples/microbotryum/30.ph
usr/share/doc/bali-phy/examples/microbotryum/37-clustalw.fasta
usr/share/doc/bali-phy/examples/microbotryum/37-clustalw.ph
usr/share/doc/bali-phy/examples/microbotryum/37-muscle.fasta
usr/share/doc/bali-phy/examples/microbotryum/37-muscle.ph
usr/share/doc/bali-phy/examples/microbotryum/37.dnd
usr/share/doc/bali-phy/examples/microbotryum/37.fasta
usr/share/doc/bali-phy/examples/microbotryum/76-clustalw.fasta
usr/share/doc/bali-phy/examples/microbotryum/76-clustalw.ph
usr/share/doc/bali-phy/examples/microbotryum/76-muscle.fasta
usr/share/doc/bali-phy/examples/microbotryum/76-muscle.ph
usr/share/doc/bali-phy/examples/microbotryum/76.dnd
usr/share/doc/bali-phy/examples/microbotryum/76.fasta
usr/share/doc/bali-phy/examples/microbotryum/additional.accessions
usr/share/doc/bali-phy/examples/microbotryum/other.accessions
usr/share/doc/bali-phy/examples/microbotryum/paper.txt
usr/share/doc/bali-phy/examples/microbotryum/table1.accessions
usr/share/doc/bali-phy/run-unit-test
usr/share/lintian
usr/share/lintian/overrides
usr/share/lintian/overrides/bali-phy
usr/share/man
usr/share/man/man1
usr/share/man/man1/alignment-cat.1.gz
usr/share/man/man1/alignment-chop-internal.1.gz
usr/share/man/man1/alignment-consensus.1.gz
usr/share/man/man1/alignment-distances.1.gz
usr/share/man/man1/alignment-draw.1.gz
usr/share/man/man1/alignment-find.1.gz
usr/share/man/man1/alignment-gild.1.gz
usr/share/man/man1/alignment-indices.1.gz
usr/share/man/man1/alignment-info.1.gz
usr/share/man/man1/alignment-max.1.gz
usr/share/man/man1/alignment-thin.1.gz
usr/share/man/man1/alignment-translate.1.gz
usr/share/man/man1/alignments-diff.1.gz
usr/share/man/man1/bali-phy-pkg.1.gz
usr/share/man/man1/bali-phy.1.gz
usr/share/man/man1/bali-subsample.1.gz
usr/share/man/man1/bp-analyze.1.gz
usr/share/man/man1/cut-range.1.gz
usr/share/man/man1/draw-tree.1.gz
usr/share/man/man1/extract-ancestors.1.gz
usr/share/man/man1/mcon-tool.1.gz
usr/share/man/man1/mctree-mean-lengths.1.gz
usr/share/man/man1/model_P.1.gz
usr/share/man/man1/pickout.1.gz
usr/share/man/man1/statreport.1.gz
usr/share/man/man1/stats-select.1.gz
usr/share/man/man1/summarize-ancestors.1.gz
usr/share/man/man1/tree-mean-lengths.1.gz
usr/share/man/man1/tree-tool.1.gz
usr/share/man/man1/trees-bootstrap.1.gz
usr/share/man/man1/trees-consensus.1.gz
usr/share/man/man1/trees-distances.1.gz
usr/share/man/man1/trees-to-SRQ.1.gz

Versions

2 versions in this repository slot, newest first