r-bioc-shortread (1.64.0-4)
2 versions available in ubuntu/resolute/universe/arm64
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute-ports
- Repository
- https://ports.ubuntu.com
- Codename
- resolute
- Component
- universe
- Source
- r-bioc-shortread
- Architecture
- arm64
- Section
- universe/gnu-r
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 8.5 MB
- Size expected
- 5.2 MB
- Size actual
- 5.2 MB
- Size match
- match
Dependencies
Required package dependencies
- r-api-4.0
- r-api-bioc-3.20
- r-bioc-biocgenerics (>= 0.23.3)
- r-bioc-biocparallel
- r-bioc-biostrings (>= 2.47.6)
- r-bioc-rsamtools (>= 1.31.2)
- r-bioc-genomicalignments (>= 1.15.6)
- r-bioc-biobase
- r-bioc-s4vectors (>= 0.17.25)
- r-bioc-iranges (>= 2.13.12)
- r-bioc-genomeinfodb (>= 1.15.2)
- r-bioc-genomicranges (>= 1.31.8)
- r-bioc-pwalign
- r-cran-hwriter
- r-cran-lattice
- r-cran-latticeextra
- r-bioc-xvector
- r-bioc-rhtslib
- libc6 (>= 2.38)
- libgcc-s1 (>= 3.0)
- libstdc++6 (>= 5.2)
- zlib1g (>= 1:1.1.4)
Recommends
Recommended package dependencies
- None
Suggested packages
Recommended additional packages
Provides
Virtual packages provided
- None
Description
GNU R classes and methods for high-throughput short-read sequencing data
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | c07abba0…37afbfb7 | match |
| SHA-1 | 0c2893ff…e7b7bf47 | match |
| SHA-256 | 9199c5bc…bf7eb8d6 | match |
| SHA-512 | bffe1096…cf7c7c3e | match |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/ShortRead usr/lib/R/site-library/ShortRead/CITATION usr/lib/R/site-library/ShortRead/DESCRIPTION usr/lib/R/site-library/ShortRead/INDEX usr/lib/R/site-library/ShortRead/Meta usr/lib/R/site-library/ShortRead/Meta/Rd.rds usr/lib/R/site-library/ShortRead/Meta/features.rds usr/lib/R/site-library/ShortRead/Meta/hsearch.rds usr/lib/R/site-library/ShortRead/Meta/links.rds usr/lib/R/site-library/ShortRead/Meta/nsInfo.rds usr/lib/R/site-library/ShortRead/Meta/package.rds usr/lib/R/site-library/ShortRead/Meta/vignette.rds usr/lib/R/site-library/ShortRead/NAMESPACE usr/lib/R/site-library/ShortRead/NEWS usr/lib/R/site-library/ShortRead/R usr/lib/R/site-library/ShortRead/R/ShortRead usr/lib/R/site-library/ShortRead/R/ShortRead.rdb usr/lib/R/site-library/ShortRead/R/ShortRead.rdx usr/lib/R/site-library/ShortRead/doc usr/lib/R/site-library/ShortRead/doc/Overview.R usr/lib/R/site-library/ShortRead/doc/Overview.Rmd usr/lib/R/site-library/ShortRead/doc/Overview.html usr/lib/R/site-library/ShortRead/doc/index.html usr/lib/R/site-library/ShortRead/extdata usr/lib/R/site-library/ShortRead/extdata/Data usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_1_sequence.txt usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_2_export.txt usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_5_0001_realign.txt usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_0001_prb.txt usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_0001_seq.txt usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_1_0001_qseq.txt usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/s_1_0001_int.txt usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/s_1_0001_nse.txt usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147 usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ERR127302_1_subset.fastq.gz usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ERR127302_2_subset.fastq.gz usr/lib/R/site-library/ShortRead/extdata/bowtie usr/lib/R/site-library/ShortRead/extdata/bowtie/s_1_aligned_bowtie.txt usr/lib/R/site-library/ShortRead/extdata/maq usr/lib/R/site-library/ShortRead/extdata/maq/out.aln.1.txt usr/lib/R/site-library/ShortRead/extdata/maq/out.aln.2.txt usr/lib/R/site-library/ShortRead/help usr/lib/R/site-library/ShortRead/help/AnIndex usr/lib/R/site-library/ShortRead/help/ShortRead.rdb usr/lib/R/site-library/ShortRead/help/ShortRead.rdx usr/lib/R/site-library/ShortRead/help/aliases.rds usr/lib/R/site-library/ShortRead/help/paths.rds usr/lib/R/site-library/ShortRead/html usr/lib/R/site-library/ShortRead/html/00Index.html usr/lib/R/site-library/ShortRead/html/R.css usr/lib/R/site-library/ShortRead/libs usr/lib/R/site-library/ShortRead/libs/ShortRead.so usr/lib/R/site-library/ShortRead/script usr/lib/R/site-library/ShortRead/script/qa-test.R usr/lib/R/site-library/ShortRead/template usr/lib/R/site-library/ShortRead/template/0000-Header.html usr/lib/R/site-library/ShortRead/template/1000-Overview.html usr/lib/R/site-library/ShortRead/template/1100-Overview-SolexaRealign.html usr/lib/R/site-library/ShortRead/template/2000-RunSummary.html usr/lib/R/site-library/ShortRead/template/3000-ReadDistribution.html usr/lib/R/site-library/ShortRead/template/4000-CycleSpecific.html usr/lib/R/site-library/ShortRead/template/5000-PerTile.html usr/lib/R/site-library/ShortRead/template/6000-Alignment.html usr/lib/R/site-library/ShortRead/template/7000-MultipleAlignment.html usr/lib/R/site-library/ShortRead/template/8000-DepthOfCoverage.html usr/lib/R/site-library/ShortRead/template/9000-AdapterContamination.html usr/lib/R/site-library/ShortRead/template/9999-Footer.html usr/lib/R/site-library/ShortRead/template/QA.css usr/lib/R/site-library/ShortRead/template/QAAdapterContamination.html usr/lib/R/site-library/ShortRead/template/QAFiltered.html usr/lib/R/site-library/ShortRead/template/QAFlagged.html usr/lib/R/site-library/ShortRead/template/QAFooter.html usr/lib/R/site-library/ShortRead/template/QAFrequentSequence.html usr/lib/R/site-library/ShortRead/template/QAHeader.html usr/lib/R/site-library/ShortRead/template/QANucleotideByCycle.html usr/lib/R/site-library/ShortRead/template/QANucleotideUse.html usr/lib/R/site-library/ShortRead/template/QAQualityByCycle.html usr/lib/R/site-library/ShortRead/template/QAQualityUse.html usr/lib/R/site-library/ShortRead/template/QAReadQuality.html usr/lib/R/site-library/ShortRead/template/QASequenceUse.html usr/lib/R/site-library/ShortRead/template/QASources.html usr/lib/R/site-library/ShortRead/template/image usr/lib/R/site-library/ShortRead/template/image/bioclogo-small.gif usr/lib/R/site-library/ShortRead/template/qa_solexa.Rnw usr/lib/R/site-library/ShortRead/unitTests usr/lib/R/site-library/ShortRead/unitTests/cases usr/lib/R/site-library/ShortRead/unitTests/cases/PE_export.txt.gz usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_int_head.txt.p usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_nse_head.txt.p usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_pos_head.txt usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_results_head.txt usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_illegal_nucleotide.txt usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_read_mismatch.txt usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_read_quality_mismatch.txt usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.9_lines.txt usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.txt usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_0001_realign_3col_head.txt usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_0001_realign_head.txt usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_export_run_as_factor.txt usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_export_toIUPAC.txt usr/lib/R/site-library/ShortRead/unitTests/cases/sanger.fastq usr/lib/R/site-library/ShortRead/unitTests/cases/soap.txt usr/lib/R/site-library/ShortRead/unitTests/cases/solexa.fastq usr/lib/R/site-library/ShortRead/unitTests/test_AlignedRead.R usr/lib/R/site-library/ShortRead/unitTests/test_AllClasses.R usr/lib/R/site-library/ShortRead/unitTests/test_FastqFile.R usr/lib/R/site-library/ShortRead/unitTests/test_Intensity.R usr/lib/R/site-library/ShortRead/unitTests/test_SRError.R usr/lib/R/site-library/ShortRead/unitTests/test_SRFilter.R usr/lib/R/site-library/ShortRead/unitTests/test_SRFilterResult.R usr/lib/R/site-library/ShortRead/unitTests/test_SRList.R usr/lib/R/site-library/ShortRead/unitTests/test_SRVector.R usr/lib/R/site-library/ShortRead/unitTests/test_ShortRead.R usr/lib/R/site-library/ShortRead/unitTests/test_ShortReadQ.R usr/lib/R/site-library/ShortRead/unitTests/test_SolexaIntensity.R usr/lib/R/site-library/ShortRead/unitTests/test_append.R usr/lib/R/site-library/ShortRead/unitTests/test_coverage.R usr/lib/R/site-library/ShortRead/unitTests/test_filterFastq.R usr/lib/R/site-library/ShortRead/unitTests/test_functions.R usr/lib/R/site-library/ShortRead/unitTests/test_qa.R usr/lib/R/site-library/ShortRead/unitTests/test_readQseq.R usr/lib/R/site-library/ShortRead/unitTests/test_readXStringColumns.R usr/lib/R/site-library/ShortRead/unitTests/test_renew.R usr/lib/R/site-library/ShortRead/unitTests/test_trimEnds.R usr/lib/R/site-library/ShortRead/unitTests/test_trimTails.R usr/lib/R/site-library/ShortRead/unitTests/test_writeFastq.R usr/share usr/share/doc usr/share/doc/r-bioc-shortread usr/share/doc/r-bioc-shortread/changelog.Debian.gz usr/share/doc/r-bioc-shortread/copyright
Versions
2 versions in this repository slot, newest first