r-bioc-mutationalpatterns (3.16.0+dfsg-2)
2 versions available in ubuntu/resolute/universe/armhf
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- resolute
- Component
- universe
- Source
- r-bioc-mutationalpatterns
- Architecture
- armhf
- Section
- universe/gnu-r
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 4.7 MB
- Size expected
- 2.5 MB
- Size actual
- 2.5 MB
- Size match
- match
Dependencies
Required package dependencies
- r-api-4.0
- r-api-bioc-3.20
- r-bioc-genomicranges (>= 1.24.0)
- r-cran-nmf (>= 0.20.6)
- r-bioc-s4vectors
- r-bioc-biocgenerics (>= 0.18.0)
- r-bioc-bsgenome (>= 1.40.0)
- r-bioc-variantannotation (>= 1.18.1)
- r-cran-dplyr (>= 0.8.3)
- r-cran-tibble (>= 2.1.3)
- r-cran-purrr (>= 0.3.2)
- r-cran-tidyr (>= 1.0.0)
- r-cran-stringr (>= 1.4.0)
- r-cran-magrittr (>= 1.5)
- r-cran-ggplot2 (>= 2.1.0)
- r-cran-pracma (>= 1.8.8)
- r-bioc-iranges (>= 2.6.0)
- r-bioc-genomeinfodb (>= 1.12.0)
- r-bioc-biostrings (>= 2.40.0)
- r-cran-ggdendro (>= 0.1-20)
- r-cran-cowplot (>= 0.9.2)
- r-cran-ggalluvial (>= 0.12.2)
- r-cran-rcolorbrewer
Recommends
Recommended package dependencies
- None
Suggested packages
Recommended additional packages
- r-bioc-biocstyle (>= 2.0.3)
- r-bioc-biomart (>= 2.28.0)
- r-cran-gridextra (>= 2.2.1)
- r-bioc-rtracklayer (>= 1.32.2)
- r-bioc-genomicfeatures
- r-bioc-annotationdbi
- r-cran-testthat
- r-cran-knitr
- r-cran-rmarkdown
Provides
Virtual packages provided
- None
Description
GNU R comprehensive genome-wide analysis of mutational processes
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | d4211fdc…c62960d9 | match |
| SHA-1 | 0454d2a6…f9d07805 | match |
| SHA-256 | bd3f9076…91f6c5ea | match |
| SHA-512 | 311ef4cb…4679125a | match |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/MutationalPatterns usr/lib/R/site-library/MutationalPatterns/CITATION usr/lib/R/site-library/MutationalPatterns/DESCRIPTION usr/lib/R/site-library/MutationalPatterns/INDEX usr/lib/R/site-library/MutationalPatterns/Meta usr/lib/R/site-library/MutationalPatterns/Meta/Rd.rds usr/lib/R/site-library/MutationalPatterns/Meta/features.rds usr/lib/R/site-library/MutationalPatterns/Meta/hsearch.rds usr/lib/R/site-library/MutationalPatterns/Meta/links.rds usr/lib/R/site-library/MutationalPatterns/Meta/nsInfo.rds usr/lib/R/site-library/MutationalPatterns/Meta/package.rds usr/lib/R/site-library/MutationalPatterns/Meta/vignette.rds usr/lib/R/site-library/MutationalPatterns/NAMESPACE usr/lib/R/site-library/MutationalPatterns/NEWS usr/lib/R/site-library/MutationalPatterns/R usr/lib/R/site-library/MutationalPatterns/R/MutationalPatterns usr/lib/R/site-library/MutationalPatterns/R/MutationalPatterns.rdb usr/lib/R/site-library/MutationalPatterns/R/MutationalPatterns.rdx usr/lib/R/site-library/MutationalPatterns/doc usr/lib/R/site-library/MutationalPatterns/doc/Introduction_to_MutationalPatterns.R usr/lib/R/site-library/MutationalPatterns/doc/Introduction_to_MutationalPatterns.Rmd usr/lib/R/site-library/MutationalPatterns/doc/index.html usr/lib/R/site-library/MutationalPatterns/extdata usr/lib/R/site-library/MutationalPatterns/extdata/ReplicationDirectionRegions.bed usr/lib/R/site-library/MutationalPatterns/extdata/blood-AC.vcf usr/lib/R/site-library/MutationalPatterns/extdata/blood-ACC55.vcf usr/lib/R/site-library/MutationalPatterns/extdata/blood-BCH.vcf usr/lib/R/site-library/MutationalPatterns/extdata/callableloci-sample.bed usr/lib/R/site-library/MutationalPatterns/extdata/colon1-sample.vcf usr/lib/R/site-library/MutationalPatterns/extdata/colon2-sample.vcf usr/lib/R/site-library/MutationalPatterns/extdata/colon3-sample.vcf usr/lib/R/site-library/MutationalPatterns/extdata/duplicate.vcf usr/lib/R/site-library/MutationalPatterns/extdata/empty.vcf usr/lib/R/site-library/MutationalPatterns/extdata/intestine1-sample.vcf usr/lib/R/site-library/MutationalPatterns/extdata/intestine2-sample.vcf usr/lib/R/site-library/MutationalPatterns/extdata/intestine3-sample.vcf usr/lib/R/site-library/MutationalPatterns/extdata/liver1-sample.vcf usr/lib/R/site-library/MutationalPatterns/extdata/liver2-sample.vcf usr/lib/R/site-library/MutationalPatterns/extdata/liver3-sample.vcf usr/lib/R/site-library/MutationalPatterns/extdata/signatures usr/lib/R/site-library/MutationalPatterns/extdata/signatures/SIGNAL_conversion_matrix.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.1_reference.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.2_reference_GRCh37.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.2_reference_GRCh38.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.2_reference_mm10.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_SIGNAL_exposure.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/indel_COSMIC_v3.1_reference.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/indel_COSMIC_v3.2_reference_GRCh37.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.1_reference.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.2_reference_GRCh37.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.2_reference_GRCh38.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.2_reference_mm10.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SIGNAL_exposure.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SIGNAL_reference.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SIGNAL_tissue.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SPARSE_reference.txt usr/lib/R/site-library/MutationalPatterns/extdata/signatures/tsb_snv_COSMIC_v3.1_reference.txt usr/lib/R/site-library/MutationalPatterns/help usr/lib/R/site-library/MutationalPatterns/help/AnIndex usr/lib/R/site-library/MutationalPatterns/help/MutationalPatterns.rdb usr/lib/R/site-library/MutationalPatterns/help/MutationalPatterns.rdx usr/lib/R/site-library/MutationalPatterns/help/aliases.rds usr/lib/R/site-library/MutationalPatterns/help/paths.rds usr/lib/R/site-library/MutationalPatterns/html usr/lib/R/site-library/MutationalPatterns/html/00Index.html usr/lib/R/site-library/MutationalPatterns/html/R.css usr/lib/R/site-library/MutationalPatterns/scripts usr/lib/R/site-library/MutationalPatterns/scripts/Format_signatures.R usr/lib/R/site-library/MutationalPatterns/scripts/create_example_dbs.R usr/lib/R/site-library/MutationalPatterns/scripts/create_example_indels.R usr/lib/R/site-library/MutationalPatterns/scripts/create_example_mbs.R usr/lib/R/site-library/MutationalPatterns/scripts/create_example_regulatory_regions.R usr/lib/R/site-library/MutationalPatterns/scripts/create_example_snvs.R usr/lib/R/site-library/MutationalPatterns/scripts/create_example_vcfs.R usr/lib/R/site-library/MutationalPatterns/states usr/lib/R/site-library/MutationalPatterns/states/CTCF_g_data.rds usr/lib/R/site-library/MutationalPatterns/states/blood_dbs_counts.rds usr/lib/R/site-library/MutationalPatterns/states/blood_grl.rds usr/lib/R/site-library/MutationalPatterns/states/blood_grl_dbs.rds usr/lib/R/site-library/MutationalPatterns/states/blood_grl_dbs_context.rds usr/lib/R/site-library/MutationalPatterns/states/blood_grl_indel.rds usr/lib/R/site-library/MutationalPatterns/states/blood_grl_indel_context.rds usr/lib/R/site-library/MutationalPatterns/states/blood_grl_mbs.rds usr/lib/R/site-library/MutationalPatterns/states/blood_indel_counts.rds usr/lib/R/site-library/MutationalPatterns/states/blood_indels_counts_split_region.rds usr/lib/R/site-library/MutationalPatterns/states/blood_indels_longmatrix_split_region.rds usr/lib/R/site-library/MutationalPatterns/states/blood_mbs_counts.rds usr/lib/R/site-library/MutationalPatterns/states/blosum62.rds usr/lib/R/site-library/MutationalPatterns/states/bootstrapped_snv_refit.rds usr/lib/R/site-library/MutationalPatterns/states/context_mismatches.rds usr/lib/R/site-library/MutationalPatterns/states/dbs_refit.rds usr/lib/R/site-library/MutationalPatterns/states/distr_data.rds usr/lib/R/site-library/MutationalPatterns/states/grl_split_region.rds usr/lib/R/site-library/MutationalPatterns/states/indel_refit.rds usr/lib/R/site-library/MutationalPatterns/states/lesion_segregation.rds usr/lib/R/site-library/MutationalPatterns/states/mut_mat_data.rds usr/lib/R/site-library/MutationalPatterns/states/mut_mat_data_extended.rds usr/lib/R/site-library/MutationalPatterns/states/mut_mat_longregions.rds usr/lib/R/site-library/MutationalPatterns/states/mut_mat_repli.rds usr/lib/R/site-library/MutationalPatterns/states/mut_mat_s_data.rds usr/lib/R/site-library/MutationalPatterns/states/mut_mat_splitregions.rds usr/lib/R/site-library/MutationalPatterns/states/nmf_res_data.rds usr/lib/R/site-library/MutationalPatterns/states/nmf_res_strand_data.rds usr/lib/R/site-library/MutationalPatterns/states/promoter_flanking_g_data.rds usr/lib/R/site-library/MutationalPatterns/states/promoter_g_data.rds usr/lib/R/site-library/MutationalPatterns/states/read_vcfs_as_granges_output.rds usr/lib/R/site-library/MutationalPatterns/states/regional_sims.rds usr/lib/R/site-library/MutationalPatterns/states/regulatory_data.rds usr/lib/R/site-library/MutationalPatterns/states/repli_strand.rds usr/lib/R/site-library/MutationalPatterns/states/snv_refit.rds usr/lib/R/site-library/MutationalPatterns/states/strict_best_snv_refit.rds usr/lib/R/site-library/MutationalPatterns/states/strict_snv_refit.rds usr/share usr/share/doc usr/share/doc/r-bioc-mutationalpatterns usr/share/doc/r-bioc-mutationalpatterns/changelog.Debian.gz usr/share/doc/r-bioc-mutationalpatterns/copyright
Versions
2 versions in this repository slot, newest first