tombo (1.5.1-8build1)
2 versions available in ubuntu/resolute/universe/armhf
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- resolute
- Component
- universe
- Source
- tombo
- Architecture
- armhf
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 1.4 MB
- Size expected
- 449.9 kB
- Size actual
- 449.9 kB
- Size match
- match
Dependencies
Required package dependencies
- python3-h5py
- python3-mappy
- python3-numpy
- python3-packaging
- python3-scipy
- python3-tqdm
- python3 (<< 3.15)
- python3 (>= 3.14~)
- python3-numpy2-abi0|python3-numpy-abi9
- python3:any
- libc6 (>= 2.29)
- libgcc-s1 (>= 3.5)
Recommends
Recommended package dependencies
Suggested packages
Recommended additional packages
- None
Provides
Virtual packages provided
- None
Description
identification of modified nucleotides from raw nanopore sequencing data
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 0fe0faf7…6f9fd223 | match |
| SHA-1 | 2a6fbb89…c77e2d1f | match |
| SHA-256 | 07342976…5d74ab53 | match |
| SHA-512 | 1b034835…ed23c63d | match |
Contents
Files and directories included
. usr usr/bin usr/bin/tombo usr/lib usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/PKG-INFO usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/dependency_links.txt usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/entry_points.txt usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/requires.txt usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/top_level.txt usr/lib/python3/dist-packages/tombo usr/lib/python3/dist-packages/tombo/R_scripts usr/lib/python3/dist-packages/tombo/R_scripts/debugDP.R usr/lib/python3/dist-packages/tombo/R_scripts/debugFit.R usr/lib/python3/dist-packages/tombo/R_scripts/debugRawDP.R usr/lib/python3/dist-packages/tombo/R_scripts/plotGroupComp.R usr/lib/python3/dist-packages/tombo/R_scripts/plotKmerDist.R usr/lib/python3/dist-packages/tombo/R_scripts/plotModelComp.R usr/lib/python3/dist-packages/tombo/R_scripts/plotMotifStats.R usr/lib/python3/dist-packages/tombo/R_scripts/plotMultiReadCorr.R usr/lib/python3/dist-packages/tombo/R_scripts/plotPerReadStats.R usr/lib/python3/dist-packages/tombo/R_scripts/plotROC.R usr/lib/python3/dist-packages/tombo/R_scripts/plotROCPerRead.R usr/lib/python3/dist-packages/tombo/R_scripts/plotReadCorr.R usr/lib/python3/dist-packages/tombo/R_scripts/plotSigMDS.R usr/lib/python3/dist-packages/tombo/R_scripts/plotSingleRead.R usr/lib/python3/dist-packages/tombo/R_scripts/plotSingleRun.R usr/lib/python3/dist-packages/tombo/__init__.py usr/lib/python3/dist-packages/tombo/__main__.py usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.cpython-314-arm-linux-gnueabihf.so usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.pyx usr/lib/python3/dist-packages/tombo/_c_helper.cpython-314-arm-linux-gnueabihf.so usr/lib/python3/dist-packages/tombo/_c_helper.pyx usr/lib/python3/dist-packages/tombo/_default_parameters.py usr/lib/python3/dist-packages/tombo/_event_resquiggle.py usr/lib/python3/dist-packages/tombo/_filter_reads.py usr/lib/python3/dist-packages/tombo/_option_parsers.py usr/lib/python3/dist-packages/tombo/_plot_commands.py usr/lib/python3/dist-packages/tombo/_preprocess.py usr/lib/python3/dist-packages/tombo/_text_output_commands.py usr/lib/python3/dist-packages/tombo/_version.py usr/lib/python3/dist-packages/tombo/resquiggle.py usr/lib/python3/dist-packages/tombo/tombo_helper.py usr/lib/python3/dist-packages/tombo/tombo_models usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.5mC.model usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.6mA.model usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.CpG.model usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.dam.model usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.dcm.model usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.model usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.180mV.model usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.200mV.model usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.5mC.model usr/lib/python3/dist-packages/tombo/tombo_stats.py usr/share usr/share/doc usr/share/doc/tombo usr/share/doc/tombo/changelog.Debian.gz usr/share/doc/tombo/copyright usr/share/man usr/share/man/man1 usr/share/man/man1/tombo.1.gz usr/share/python3 usr/share/python3/runtime.d usr/share/python3/runtime.d/tombo.rtupdate usr/share/tombo usr/share/tombo/scripts usr/share/tombo/scripts/debug_bandwidth.R usr/share/tombo/scripts/debug_est_alt.R usr/share/tombo/scripts/debug_params.R usr/share/tombo/scripts/dump_per_read_statistics.py usr/share/tombo/scripts/outlier_robust_llr.R usr/share/tombo/scripts/plot_correction.py usr/share/tombo/scripts/plot_multi_correction.py usr/share/tombo/scripts/plot_single_read.py usr/share/tombo/scripts/test_beta_priors.R
Versions
2 versions in this repository slot, newest first