r-bioc-cner (1.42.0+dfsg-4)
2 versions available in ubuntu/resolute/universe/ppc64el
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute-ports
- Repository
- https://ports.ubuntu.com
- Codename
- resolute
- Component
- universe
- Source
- r-bioc-cner
- Architecture
- ppc64el
- Section
- universe/gnu-r
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 18.6 MB
- Size expected
- 9 MB
- Size actual
- 9 MB
- Size match
- match
Dependencies
Required package dependencies
- r-api-4.0
- r-api-bioc-3.20
- r-bioc-biostrings (>= 2.33.4)
- r-bioc-pwalign
- r-cran-dbi (>= 0.7)
- r-cran-rsqlite (>= 0.11.4)
- r-bioc-genomeinfodb (>= 1.1.3)
- r-bioc-genomicranges (>= 1.23.16)
- r-bioc-rtracklayer (>= 1.25.5)
- r-bioc-xvector (>= 0.5.4)
- r-bioc-genomicalignments (>= 1.1.9)
- r-bioc-s4vectors (>= 0.13.13)
- r-bioc-iranges (>= 2.5.27)
- r-cran-readr (>= 0.2.2)
- r-bioc-biocgenerics
- r-cran-reshape2 (>= 1.4.1)
- r-cran-ggplot2 (>= 2.1.0)
- r-cran-powerlaw (>= 0.60.3)
- r-bioc-annotate (>= 1.50.0)
- r-bioc-go.db (>= 3.3.0)
- r-cran-r.utils (>= 2.3.0)
- r-bioc-keggrest (>= 1.14.0)
- libc6 (>= 2.38)
Recommends
Recommended package dependencies
- None
Suggested packages
Recommended additional packages
Provides
Virtual packages provided
- None
Description
CNE Detection and Visualization
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 88eee0eb…89d5d3fb | match |
| SHA-1 | 4898cd3a…a43d6683 | match |
| SHA-256 | dd7b1066…ed2c0ecd | match |
| SHA-512 | 8b8467ca…92f302b0 | match |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/CNEr usr/lib/R/site-library/CNEr/CITATION usr/lib/R/site-library/CNEr/DESCRIPTION usr/lib/R/site-library/CNEr/INDEX usr/lib/R/site-library/CNEr/Meta usr/lib/R/site-library/CNEr/Meta/Rd.rds usr/lib/R/site-library/CNEr/Meta/data.rds usr/lib/R/site-library/CNEr/Meta/features.rds usr/lib/R/site-library/CNEr/Meta/hsearch.rds usr/lib/R/site-library/CNEr/Meta/links.rds usr/lib/R/site-library/CNEr/Meta/nsInfo.rds usr/lib/R/site-library/CNEr/Meta/package.rds usr/lib/R/site-library/CNEr/Meta/vignette.rds usr/lib/R/site-library/CNEr/NAMESPACE usr/lib/R/site-library/CNEr/NEWS usr/lib/R/site-library/CNEr/R usr/lib/R/site-library/CNEr/R/CNEr usr/lib/R/site-library/CNEr/R/CNEr.rdb usr/lib/R/site-library/CNEr/R/CNEr.rdx usr/lib/R/site-library/CNEr/data usr/lib/R/site-library/CNEr/data/CNEDanRer10Hg38.rda usr/lib/R/site-library/CNEr/data/CNEHg38DanRer10.rda usr/lib/R/site-library/CNEr/data/axisTrack.rda usr/lib/R/site-library/CNEr/data/cneFinalListDanRer10Hg38.rda usr/lib/R/site-library/CNEr/data/cpgIslands.rda usr/lib/R/site-library/CNEr/data/grangesPairsForDotplot.rda usr/lib/R/site-library/CNEr/data/refGenes.rda usr/lib/R/site-library/CNEr/doc usr/lib/R/site-library/CNEr/doc/CNEr.R usr/lib/R/site-library/CNEr/doc/CNEr.Rmd usr/lib/R/site-library/CNEr/doc/PairwiseWholeGenomeAlignment.R usr/lib/R/site-library/CNEr/doc/PairwiseWholeGenomeAlignment.Rmd usr/lib/R/site-library/CNEr/doc/index.html usr/lib/R/site-library/CNEr/extdata usr/lib/R/site-library/CNEr/extdata/chr4.hg19.galGal3.net.axt.gz usr/lib/R/site-library/CNEr/extdata/cne2wBf_AstMex102_danRer10_48_50 usr/lib/R/site-library/CNEr/extdata/cne2wBf_cteIde1_danRer10_100_100 usr/lib/R/site-library/CNEr/extdata/cne2wBf_cypCar1_danRer10_100_100 usr/lib/R/site-library/CNEr/extdata/cne2wBf_danRer10_hg38_45_50 usr/lib/R/site-library/CNEr/extdata/danRer10.hg38.net.axt usr/lib/R/site-library/CNEr/extdata/danRer10CNE.sqlite usr/lib/R/site-library/CNEr/extdata/filter_regions.danRer10.bed usr/lib/R/site-library/CNEr/extdata/filter_regions.hg38.bed usr/lib/R/site-library/CNEr/extdata/hg38.danRer10.net.axt usr/lib/R/site-library/CNEr/extdata/rmsk.fa usr/lib/R/site-library/CNEr/help usr/lib/R/site-library/CNEr/help/AnIndex usr/lib/R/site-library/CNEr/help/CNEr.rdb usr/lib/R/site-library/CNEr/help/CNEr.rdx usr/lib/R/site-library/CNEr/help/aliases.rds usr/lib/R/site-library/CNEr/help/paths.rds usr/lib/R/site-library/CNEr/html usr/lib/R/site-library/CNEr/html/00Index.html usr/lib/R/site-library/CNEr/html/R.css usr/lib/R/site-library/CNEr/libs usr/lib/R/site-library/CNEr/libs/CNEr.so usr/lib/R/site-library/CNEr/obsolete usr/lib/R/site-library/CNEr/obsolete/CNEr.Rnw usr/lib/R/site-library/CNEr/obsolete/alignment.c usr/lib/R/site-library/CNEr/obsolete/ceScan.r usr/lib/R/site-library/CNEr/obsolete/ceScanR.r usr/lib/R/site-library/CNEr/obsolete/class.r usr/lib/R/site-library/CNEr/obsolete/src usr/lib/R/site-library/CNEr/obsolete/src/ceScan.c usr/lib/R/site-library/CNEr/obsolete/src/ceScanBranch1.c usr/lib/R/site-library/CNEr/obsolete/src/ceScanBranch2.c usr/lib/R/site-library/CNEr/obsolete/src/compile usr/lib/R/site-library/CNEr/scripts usr/lib/R/site-library/CNEr/scripts/danRer10Pipeline.R usr/lib/R/site-library/CNEr/scripts/prepareData.R usr/share usr/share/doc usr/share/doc/r-bioc-cner usr/share/doc/r-bioc-cner/changelog.Debian.gz usr/share/doc/r-bioc-cner/copyright
Versions
2 versions in this repository slot, newest first