r-bioc-monocle (2.34.0-3)
2 versions available in ubuntu/resolute/universe/ppc64el
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute-ports
- Repository
- https://ports.ubuntu.com
- Codename
- resolute
- Component
- universe
- Source
- r-bioc-monocle
- Architecture
- ppc64el
- Section
- universe/gnu-r
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 1.8 MB
- Size expected
- 1.5 MB
- Size actual
- 1.5 MB
- Size match
- match
Dependencies
Required package dependencies
- r-api-4.0
- r-api-bioc-3.20
- r-cran-matrix (>= 1.2-6)
- r-bioc-biobase
- r-cran-ggplot2 (>= 1.0.0)
- r-cran-vgam (>= 1.0-6)
- r-cran-ddrtree (>= 0.1.4)
- r-cran-igraph (>= 1.0.1)
- r-bioc-biocgenerics
- r-bioc-hsmmsinglecell (>= 0.101.5)
- r-cran-plyr
- r-cran-cluster
- r-cran-combinat
- r-cran-fastica
- r-cran-irlba (>= 2.0.0)
- r-cran-matrixstats
- r-cran-rtsne
- r-cran-mass
- r-cran-reshape2
- r-cran-leidenbase (>= 0.1.9)
- r-bioc-limma
- r-cran-tibble
- r-cran-dplyr
- r-cran-pheatmap
- r-cran-stringr
- r-cran-proxy
- r-cran-slam
- r-cran-viridis
- r-bioc-biocviews
- r-cran-rann (>= 2.5)
- r-cran-rcpp (>= 0.12.0)
- libc6 (>= 2.17)
- libgcc-s1 (>= 3.0)
- libstdc++6 (>= 14)
Recommends
Recommended package dependencies
- None
Suggested packages
Recommended additional packages
Provides
Virtual packages provided
- None
Description
clustering, differential expression, and trajectory analysis for RNA-Seq
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | bbb9a512…919d940e | match |
| SHA-1 | 15dd8ada…85252872 | match |
| SHA-256 | 6c042d03…8baeeb42 | match |
| SHA-512 | 90f6d181…6264b1df | match |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/monocle usr/lib/R/site-library/monocle/CITATION usr/lib/R/site-library/monocle/DESCRIPTION usr/lib/R/site-library/monocle/INDEX usr/lib/R/site-library/monocle/Meta usr/lib/R/site-library/monocle/Meta/Rd.rds usr/lib/R/site-library/monocle/Meta/data.rds usr/lib/R/site-library/monocle/Meta/features.rds usr/lib/R/site-library/monocle/Meta/hsearch.rds usr/lib/R/site-library/monocle/Meta/links.rds usr/lib/R/site-library/monocle/Meta/nsInfo.rds usr/lib/R/site-library/monocle/Meta/package.rds usr/lib/R/site-library/monocle/Meta/vignette.rds usr/lib/R/site-library/monocle/NAMESPACE usr/lib/R/site-library/monocle/NEWS usr/lib/R/site-library/monocle/R usr/lib/R/site-library/monocle/R/monocle usr/lib/R/site-library/monocle/R/monocle.rdb usr/lib/R/site-library/monocle/R/monocle.rdx usr/lib/R/site-library/monocle/data usr/lib/R/site-library/monocle/data/Rdata.rdb usr/lib/R/site-library/monocle/data/Rdata.rds usr/lib/R/site-library/monocle/data/Rdata.rdx usr/lib/R/site-library/monocle/doc usr/lib/R/site-library/monocle/doc/index.html usr/lib/R/site-library/monocle/doc/monocle-vignette.R usr/lib/R/site-library/monocle/doc/monocle-vignette.Rnw usr/lib/R/site-library/monocle/doc/monocle-vignette.pdf usr/lib/R/site-library/monocle/extdata usr/lib/R/site-library/monocle/extdata/lung_exprs_data.RData usr/lib/R/site-library/monocle/extdata/lung_feature_data.RData usr/lib/R/site-library/monocle/extdata/lung_phenotype_data.RData usr/lib/R/site-library/monocle/help usr/lib/R/site-library/monocle/help/AnIndex usr/lib/R/site-library/monocle/help/aliases.rds usr/lib/R/site-library/monocle/help/monocle.rdb usr/lib/R/site-library/monocle/help/monocle.rdx usr/lib/R/site-library/monocle/help/paths.rds usr/lib/R/site-library/monocle/html usr/lib/R/site-library/monocle/html/00Index.html usr/lib/R/site-library/monocle/html/R.css usr/lib/R/site-library/monocle/libs usr/lib/R/site-library/monocle/libs/monocle.so usr/lib/R/site-library/monocle/tests usr/lib/R/site-library/monocle/tests/basic_tests.R usr/lib/R/site-library/monocle/tests/test.addCellType.R usr/lib/R/site-library/monocle/tests/test.calculateMarkerSpecificity.R usr/lib/R/site-library/monocle/tests/test.classifyCells.R usr/lib/R/site-library/monocle/tests/test.clusterCells.R usr/lib/R/site-library/monocle/tests/test.detectGenes.R usr/lib/R/site-library/monocle/tests/test.differentialGeneTest.R usr/lib/R/site-library/monocle/tests/test.dispersionTable.R usr/lib/R/site-library/monocle/tests/test.estimateDispersions.R usr/lib/R/site-library/monocle/tests/test.markerDiffTable.R usr/lib/R/site-library/monocle/tests/test.newCellDataSet.R usr/lib/R/site-library/monocle/tests/test.newCellTypeHierarchy.R usr/lib/R/site-library/monocle/tests/test.orderCells.R usr/lib/R/site-library/monocle/tests/test.plotCellTrajectory.R usr/lib/R/site-library/monocle/tests/test.plot_cell_clusters.R usr/lib/R/site-library/monocle/tests/test.plot_genes_jitter.R usr/lib/R/site-library/monocle/tests/test.plot_ordering_genes.R usr/lib/R/site-library/monocle/tests/test.plot_pc_variance_explained.R usr/lib/R/site-library/monocle/tests/test.reduceDimension.R usr/lib/R/site-library/monocle/tests/test.relative2abs.R usr/lib/R/site-library/monocle/tests/test.setOrderingFilter.R usr/share usr/share/doc usr/share/doc/r-bioc-monocle usr/share/doc/r-bioc-monocle/changelog.Debian.gz usr/share/doc/r-bioc-monocle/copyright
Versions
2 versions in this repository slot, newest first