lumpy-sv (0.3.1+dfsg-8.1)
2 versions available in ubuntu/resolute/universe/riscv64
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute-ports
- Repository
- https://ports.ubuntu.com
- Codename
- resolute
- Component
- universe
- Source
- lumpy-sv
- Architecture
- riscv64
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 565.2 kB
- Size expected
- 218.1 kB
- Size actual
- 218.1 kB
- Size match
- match
Dependencies
Required package dependencies
- libbamtools2.5.3 (>= 2.5.3+dfsg)
- libc6 (>= 2.38)
- libgcc-s1 (>= 3.0)
- libgzstream0 (>= 1.5+git20171107.9a20658)
- libhts3t64 (>= 1.17)
- libstdc++6 (>= 13.1)
- samblaster
- samtools
- python3
- python3-pysam
- python3-numpy
- bamkit
Recommends
Recommended package dependencies
Suggested packages
Recommended additional packages
- None
Provides
Virtual packages provided
- None
Description
general probabilistic framework for structural variant discovery
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | b6b8deed…8a9c3830 | not available |
| SHA-1 | 244d354a…60e5ddb4 | not available |
| SHA-256 | 6ea04647…deffe8a5 | not available |
| SHA-512 | 64673d7c…953fb65e | match |
Contents
Files and directories included
. etc etc/lumpy-sv etc/lumpy-sv/lumpyexpress.config usr usr/bin usr/bin/lumpy usr/bin/lumpy_filter usr/bin/lumpyexpress usr/share usr/share/doc usr/share/doc/lumpy-sv usr/share/doc/lumpy-sv/README.md.gz usr/share/doc/lumpy-sv/changelog.Debian.gz usr/share/doc/lumpy-sv/copyright usr/share/lumpy-sv usr/share/lumpy-sv/scripts usr/share/lumpy-sv/scripts/bamkit usr/share/lumpy-sv/scripts/bedpe_sort.py usr/share/lumpy-sv/scripts/check_sorting.py usr/share/lumpy-sv/scripts/cnvanator_to_bedpes.py usr/share/lumpy-sv/scripts/extract-sites.py usr/share/lumpy-sv/scripts/extractSplitReads_BwaMem usr/share/lumpy-sv/scripts/get_coverages.py usr/share/lumpy-sv/scripts/get_exclude_regions.py usr/share/lumpy-sv/scripts/l_bp.py usr/share/lumpy-sv/scripts/l_merge.py usr/share/lumpy-sv/scripts/l_sort.py usr/share/lumpy-sv/scripts/lumpy_smooth usr/share/lumpy-sv/scripts/lumpyexpress usr/share/lumpy-sv/scripts/pairend_distro.py usr/share/lumpy-sv/scripts/par-svtyper.sh usr/share/lumpy-sv/scripts/prob_bedpe_to_bedgraph.py usr/share/lumpy-sv/scripts/run_histo.sh usr/share/lumpy-sv/scripts/split_unmapped_to_fasta.pl usr/share/lumpy-sv/scripts/vcfToBedpe usr/share/man usr/share/man/man1 usr/share/man/man1/lumpy.1.gz usr/share/man/man1/lumpy_filter.1.gz usr/share/man/man1/lumpyexpress.1.gz usr/share/lumpy-sv/scripts/lumpyexpress.config
Versions
2 versions in this repository slot, newest first