parsnp (2.1.3+dfsg-1build1)
2 versions available in ubuntu/resolute/universe/riscv64
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute-ports
- Repository
- https://ports.ubuntu.com
- Codename
- resolute
- Component
- universe
- Source
- parsnp
- Architecture
- riscv64
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 2 MB
- Size expected
- 262.5 kB
- Size actual
- 262.5 kB
- Size match
- match
Dependencies
Required package dependencies
- libc6 (>= 2.38)
- libgcc-s1 (>= 3.0)
- libgomp1 (>= 6)
- libmuscle1 (>= 3.7+4565)
- libstdc++6 (>= 14)
- python3:any
- python3-biopython
- python3-numpy
- python3-pyspoa
- python3-tqdm
- fasttree
- harvest-tools
- mummer
- phipack
- python3
- raxml
- time
Recommends
Recommended package dependencies
Suggested packages
Recommended additional packages
- None
Provides
Virtual packages provided
- None
Description
rapid core genome multi-alignment
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | d7da695d…2209d8a4 | not available |
| SHA-1 | f99a6a74…1751eb61 | not available |
| SHA-256 | c1844370…4099e256 | not available |
| SHA-512 | 38a9440d…0649c033 | match |
Contents
Files and directories included
. usr usr/bin usr/bin/parsnp usr/lib usr/lib/parsnp usr/lib/parsnp/parsnp_core usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/parsnp usr/lib/python3/dist-packages/parsnp/extend.py usr/lib/python3/dist-packages/parsnp/logger.py usr/lib/python3/dist-packages/parsnp/partition.py usr/share usr/share/doc usr/share/doc/parsnp usr/share/doc/parsnp/NEWS.gz usr/share/doc/parsnp/README.md.gz usr/share/doc/parsnp/README.test usr/share/doc/parsnp/changelog.Debian.gz usr/share/doc/parsnp/copyright usr/share/doc/parsnp/examples usr/share/doc/parsnp/examples/mers_virus usr/share/doc/parsnp/examples/mers_virus/genomes usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_12_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_15_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_16_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_17_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_18_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_19_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_1_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_21_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_25_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_2_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_3_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_4_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Bisha_1_2012.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Buraidah_1_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/EMC_2012.fna usr/share/doc/parsnp/examples/mers_virus/genomes/England-Qatar_2012.fna usr/share/doc/parsnp/examples/mers_virus/genomes/England1.fna usr/share/doc/parsnp/examples/mers_virus/genomes/FRA-UAE.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_1_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_2_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al_Batin_6_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Indiana-USA-1_Saudi_Arabia_2014.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_1_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Jordan-N3_2012.fna usr/share/doc/parsnp/examples/mers_virus/genomes/KF192507.1.fna usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_1.fna usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_13.fna usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_19Dam.fna usr/share/doc/parsnp/examples/mers_virus/genomes/KJ477102.1.fna usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-363.fna usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-376.fna usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-378.fna usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-503.fna usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-505.fna usr/share/doc/parsnp/examples/mers_virus/genomes/NC_019843.2.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar3.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar4.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_14_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_1_2012.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_2_2012.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_3_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_4_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_5_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_9_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Taif_1_2013.fna usr/share/doc/parsnp/examples/mers_virus/genomes/Wadi-Ad-Dawasir_1_2013.fna usr/share/doc/parsnp/examples/mers_virus/ref usr/share/doc/parsnp/examples/mers_virus/ref/England1.fna usr/share/doc/parsnp/examples/mers_virus/ref/England1.gbk usr/share/doc/parsnp/run-unit-test usr/share/man usr/share/man/man1 usr/share/man/man1/parsnp.1.gz usr/share/parsnp usr/share/parsnp/template.ini
Versions
2 versions in this repository slot, newest first